Wall clock time and date at job start Tue Mar 31 2020 23:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46820 * 2 1 4 4 N 1.46907 * 109.46812 * 119.99743 * 2 1 3 5 5 C 1.46904 * 110.99634 * 274.87484 * 4 2 1 6 6 H 1.08998 * 109.47448 * 35.02031 * 5 4 2 7 7 C 1.53002 * 109.46872 * 155.01822 * 5 4 2 8 8 C 1.50701 * 109.47019 * 275.01776 * 5 4 2 9 9 H 1.08004 * 119.99896 * 359.97438 * 8 5 4 10 10 C 1.37878 * 120.00136 * 180.02562 * 8 5 4 11 11 N 1.31518 * 119.99583 * 359.97438 * 10 8 5 12 12 Si 1.86793 * 120.00093 * 179.97438 * 10 8 5 13 13 H 1.48491 * 109.47315 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47059 * 120.00036 * 12 10 8 15 15 H 1.48504 * 109.47205 * 239.99632 * 12 10 8 16 16 C 1.50692 * 109.47079 * 239.99487 * 2 1 3 17 17 O 1.21291 * 120.00048 * 239.99774 * 16 2 1 18 18 N 1.34777 * 120.00250 * 60.27983 * 16 2 1 19 19 C 1.39920 * 120.00315 * 174.56979 * 18 16 2 20 20 C 1.38896 * 120.07237 * 326.92270 * 19 18 16 21 21 C 1.38092 * 119.92835 * 179.78681 * 20 19 18 22 22 C 1.38300 * 120.07186 * 0.49108 * 21 20 19 23 23 C 1.38263 * 120.14281 * 359.73497 * 22 21 20 24 24 S 1.76194 * 119.96684 * 180.02562 * 23 22 21 25 25 N 1.65600 * 107.22191 * 270.02685 * 24 23 22 26 26 O 1.42105 * 106.40487 * 23.56460 * 24 23 22 27 27 O 1.42096 * 106.40383 * 156.48758 * 24 23 22 28 28 C 1.38139 * 120.06835 * 0.03200 * 23 22 21 29 29 H 1.09005 * 109.47225 * 64.69732 * 1 2 3 30 30 H 1.09002 * 109.46969 * 184.69746 * 1 2 3 31 31 H 1.08996 * 109.47422 * 304.69394 * 1 2 3 32 32 H 1.00892 * 111.00149 * 38.82612 * 4 2 1 33 33 H 1.09001 * 109.46918 * 66.54206 * 7 5 4 34 34 H 1.08998 * 109.47190 * 186.53610 * 7 5 4 35 35 H 1.08998 * 109.47175 * 306.53771 * 7 5 4 36 36 H 0.97002 * 119.99888 * 180.02562 * 11 10 8 37 37 H 0.97002 * 119.99586 * 354.56779 * 18 16 2 38 38 H 1.07997 * 120.03463 * 359.97438 * 20 19 18 39 39 H 1.08003 * 119.96134 * 180.22751 * 21 20 19 40 40 H 1.08004 * 119.93285 * 179.76247 * 22 21 20 41 41 H 0.97001 * 120.00691 * 149.99623 * 25 24 23 42 42 H 0.97013 * 119.99643 * 330.00156 * 25 24 23 43 43 H 1.07998 * 120.03608 * 179.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0852 0.2235 2.3462 6 1 1.2614 0.9350 2.2904 7 6 1.9800 -0.5777 3.6455 8 6 3.3950 0.9683 2.3199 9 1 4.1076 0.7798 1.5306 10 6 3.6840 1.8897 3.3041 11 7 2.8163 2.1188 4.2655 12 14 5.3078 2.8123 3.2718 13 1 6.1022 2.3754 2.0958 14 1 5.0464 4.2712 3.1789 15 1 6.0660 2.5236 4.5157 16 6 2.0323 -0.7105 -1.2303 17 8 2.7296 -1.6966 -1.1190 18 7 1.7114 -0.2469 -2.4545 19 6 2.2688 -0.8367 -3.5943 20 6 3.5570 -1.3543 -3.5509 21 6 4.1026 -1.9397 -4.6763 22 6 3.3716 -2.0019 -5.8487 23 6 2.0908 -1.4834 -5.8966 24 16 1.1633 -1.5657 -7.3924 25 7 1.4900 -0.1863 -8.2484 26 8 1.7078 -2.6423 -8.1434 27 8 -0.2060 -1.4920 -7.0201 28 6 1.5374 -0.9008 -4.7729 29 1 -0.3634 0.4392 -0.9291 30 1 -0.3633 -1.0242 0.0842 31 1 -0.3634 0.5849 0.8449 32 1 1.4483 -1.4966 1.4113 33 1 2.8638 -1.2057 3.7576 34 1 1.9117 0.1076 4.4903 35 1 1.0896 -1.2056 3.6141 36 1 3.0195 2.7673 4.9577 37 1 1.0939 0.4957 -2.5453 38 1 4.1302 -1.3016 -2.6371 39 1 5.1029 -2.3456 -4.6421 40 1 3.8020 -2.4568 -6.7286 41 1 1.4620 -0.1989 -9.2179 42 1 1.7096 0.6345 -7.7802 43 1 0.5371 -0.4956 -4.8110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460313656.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:47 Heat of formation + Delta-G solvation = -76.568133 kcal Electronic energy + Delta-G solvation = -27151.724284 eV Core-core repulsion = 23131.102552 eV Total energy + Delta-G solvation = -4020.621731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.62303 -38.73125 -37.45484 -36.21982 -36.12329 -34.79160 -33.57313 -33.10440 -31.54037 -30.89049 -29.54439 -27.01044 -25.22044 -24.47370 -23.64934 -22.41806 -20.50424 -20.22292 -19.65382 -18.73766 -17.73027 -17.33464 -16.95169 -16.52612 -16.19471 -15.88649 -15.52247 -15.25136 -14.95032 -14.56274 -14.38948 -14.00565 -13.75931 -13.51275 -13.25347 -12.72150 -12.63155 -12.49134 -12.43062 -12.38053 -12.31878 -12.10469 -11.93320 -11.45362 -11.36767 -11.09941 -10.97930 -10.84437 -10.69615 -10.56631 -10.43125 -10.23160 -10.00867 -9.64780 -9.39042 -9.16588 -8.47657 -8.37990 -7.35541 -6.05321 -4.08678 0.06682 0.55868 0.97245 2.68855 2.84025 2.98344 3.23961 3.25928 3.34628 3.39826 3.51304 4.21166 4.38397 4.52816 4.73621 4.80718 4.95451 5.04807 5.15494 5.25241 5.28448 5.34525 5.42125 5.53208 5.58195 5.68045 5.81483 5.97368 6.08332 6.10055 6.20955 6.25939 6.62624 6.68361 6.73109 6.88425 6.94597 7.25406 7.40438 7.66261 7.84469 8.11317 8.24162 8.32945 8.62165 8.99343 9.56971 11.01410 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020369 B = 0.002338 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.316078 B =11975.471594 C =12448.335680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.079 3.921 3 H 0.115 0.885 4 N -0.663 5.663 5 C 0.213 3.787 6 H 0.005 0.995 7 C -0.140 4.140 8 C -0.497 4.497 9 H 0.062 0.938 10 C 0.056 3.944 11 N -0.896 5.896 12 Si 0.895 3.105 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.284 1.284 16 C 0.519 3.481 17 O -0.497 6.497 18 N -0.684 5.684 19 C 0.144 3.856 20 C -0.064 4.064 21 C -0.118 4.118 22 C -0.041 4.041 23 C -0.658 4.658 24 S 2.705 3.295 25 N -1.249 6.249 26 O -0.964 6.964 27 O -0.962 6.962 28 C -0.060 4.060 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.325 0.675 33 H 0.038 0.962 34 H 0.086 0.914 35 H 0.006 0.994 36 H 0.259 0.741 37 H 0.411 0.589 38 H 0.148 0.852 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.420 0.580 42 H 0.417 0.583 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.727 -1.814 -22.719 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.036 4.036 3 H 0.133 0.867 4 N -0.294 5.294 5 C 0.107 3.893 6 H 0.023 0.977 7 C -0.198 4.198 8 C -0.535 4.535 9 H 0.080 0.920 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.723 3.277 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.210 1.210 16 C 0.307 3.693 17 O -0.368 6.368 18 N -0.332 5.332 19 C 0.048 3.952 20 C -0.084 4.084 21 C -0.138 4.138 22 C -0.061 4.061 23 C -0.747 4.747 24 S 2.794 3.206 25 N -0.923 5.923 26 O -0.954 6.954 27 O -0.951 6.951 28 C -0.082 4.082 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.143 0.857 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.025 0.975 36 H 0.069 0.931 37 H 0.247 0.753 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.250 0.750 42 H 0.245 0.755 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.171 -3.183 -22.649 23.090 hybrid contribution 0.228 1.692 0.663 1.831 sum -2.943 -1.492 -21.986 22.232 Atomic orbital electron populations 1.22520 0.96005 1.02536 1.02710 1.21378 0.92905 0.99499 0.89828 0.86722 1.60334 1.55345 1.09786 1.03887 1.19228 0.96626 0.88996 0.84483 0.97692 1.21920 0.97022 0.99111 1.01747 1.21219 1.02208 1.20016 1.10093 0.92010 1.24953 0.96980 0.97026 0.95494 1.69902 1.35064 1.34941 1.13684 0.86483 0.83873 0.79276 0.78030 1.19799 1.21200 1.21047 1.21497 0.79787 0.84224 0.83795 1.90670 1.35485 1.24655 1.85969 1.43861 1.48277 1.36575 1.04442 1.17843 0.92416 0.97876 0.87069 1.21700 0.93049 0.94188 0.99482 1.21235 1.00704 0.99624 0.92222 1.20876 0.91683 0.94494 0.99034 1.30363 1.09909 1.15320 1.19091 1.01434 0.73734 0.72490 0.72962 1.53143 1.91150 1.28591 1.19387 1.93596 1.79716 1.51963 1.70084 1.93616 1.32136 1.85866 1.83483 1.20627 0.98741 0.97309 0.91491 0.92555 0.92323 0.90820 0.85721 0.94291 0.89549 0.97457 0.93075 0.75253 0.83404 0.84526 0.84118 0.74997 0.75545 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 9.10 37.16 0.34 -2.02 16 2 C 0.08 1.31 2.81 -68.86 -0.19 1.12 16 3 H 0.12 2.03 7.63 -51.93 -0.40 1.63 16 4 N -0.66 -13.64 5.53 -102.17 -0.57 -14.21 16 5 C 0.21 5.07 2.42 -68.86 -0.17 4.90 16 6 H 0.01 0.14 7.16 -51.93 -0.37 -0.24 16 7 C -0.14 -3.27 8.93 37.16 0.33 -2.94 16 8 C -0.50 -13.26 8.49 -34.44 -0.29 -13.55 16 9 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 10 C 0.06 1.51 5.30 -17.82 -0.09 1.42 16 11 N -0.90 -24.76 11.39 55.43 0.63 -24.13 16 12 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 C 0.52 8.37 6.96 -10.99 -0.08 8.30 16 17 O -0.50 -9.75 14.10 5.55 0.08 -9.67 16 18 N -0.68 -8.34 5.25 -9.86 -0.05 -8.40 16 19 C 0.14 1.77 6.28 -83.69 -0.53 1.25 16 20 C -0.06 -0.83 8.66 -39.39 -0.34 -1.17 16 21 C -0.12 -1.24 10.04 -39.61 -0.40 -1.64 16 22 C -0.04 -0.39 9.52 -39.55 -0.38 -0.76 16 23 C -0.66 -6.26 5.97 -39.61 -0.24 -6.50 16 24 S 2.71 22.90 6.28 -107.50 -0.68 22.22 16 25 N -1.25 -5.33 9.52 60.35 0.57 -4.76 16 26 O -0.96 -10.90 17.28 -57.17 -0.99 -11.89 16 27 O -0.96 -11.29 17.28 -57.17 -0.99 -12.27 16 28 C -0.06 -0.61 9.44 -39.39 -0.37 -0.98 16 29 H 0.06 0.57 7.34 -51.93 -0.38 0.18 16 30 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 31 H 0.07 1.05 7.50 -51.93 -0.39 0.66 16 32 H 0.33 6.30 7.94 -39.30 -0.31 5.98 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.09 2.21 6.27 -51.93 -0.33 1.88 16 35 H 0.01 0.13 7.99 -51.93 -0.41 -0.28 16 36 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.41 3.64 8.04 -40.82 -0.33 3.31 16 38 H 0.15 2.21 6.40 -52.49 -0.34 1.87 16 39 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 40 H 0.14 1.07 7.61 -52.48 -0.40 0.67 16 41 H 0.42 1.10 8.96 -34.48 -0.31 0.79 16 42 H 0.42 0.94 8.96 -34.47 -0.31 0.63 16 43 H 0.14 1.19 7.61 -52.49 -0.40 0.79 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -36.05 371.22 -9.29 -45.35 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.48 Total: 8.76 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -2.40 Total: -12.59 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.59 Total: -51.49 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -1.90 Total: -33.83 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 22.90 SS G_CDS: -0.68 Total: 22.22 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.05 -9.29 -45.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460313656.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.222 kcal (2) G-P(sol) polarization free energy of solvation -36.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds