Wall clock time and date at job start Tue Mar 31 2020 23:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47637 * 2 1 4 4 C 1.50697 * 109.47285 * 240.00010 * 2 1 3 5 5 H 1.08005 * 120.00073 * 240.00122 * 4 2 1 6 6 C 1.37875 * 120.00155 * 59.99794 * 4 2 1 7 7 N 1.31517 * 119.99837 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00156 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47245 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46842 * 120.00038 * 8 6 4 11 11 H 1.48498 * 109.47452 * 240.00213 * 8 6 4 12 12 N 1.46906 * 109.47450 * 119.99731 * 2 1 3 13 13 C 1.46897 * 111.00479 * 205.16765 * 12 2 1 14 14 H 1.09008 * 109.46700 * 323.92014 * 13 12 2 15 15 C 1.52996 * 109.47025 * 83.91647 * 13 12 2 16 16 C 1.50697 * 109.47190 * 203.92018 * 13 12 2 17 17 O 1.21282 * 120.00208 * 359.97438 * 16 13 12 18 18 N 1.34775 * 119.99949 * 179.97438 * 16 13 12 19 19 C 1.39921 * 120.00148 * 175.02342 * 18 16 13 20 20 C 1.38900 * 120.06698 * 326.96172 * 19 18 16 21 21 C 1.38089 * 119.92302 * 179.69899 * 20 19 18 22 22 C 1.38306 * 120.07376 * 0.59773 * 21 20 19 23 23 C 1.38254 * 120.14277 * 359.67512 * 22 21 20 24 24 S 1.76199 * 119.96864 * 180.02562 * 23 22 21 25 25 N 1.65602 * 107.21495 * 270.02490 * 24 23 22 26 26 O 1.42101 * 106.40174 * 23.55951 * 24 23 22 27 27 O 1.42093 * 106.40333 * 156.48399 * 24 23 22 28 28 C 1.38139 * 120.06926 * 0.02677 * 23 22 21 29 29 H 1.08998 * 109.46854 * 303.10505 * 1 2 3 30 30 H 1.09000 * 109.46986 * 63.10106 * 1 2 3 31 31 H 1.09001 * 109.46989 * 183.10686 * 1 2 3 32 32 H 0.97001 * 119.99873 * 180.02562 * 7 6 4 33 33 H 1.00902 * 110.99771 * 81.21276 * 12 2 1 34 34 H 1.09002 * 109.47435 * 175.31819 * 15 13 12 35 35 H 1.09001 * 109.47501 * 295.31970 * 15 13 12 36 36 H 1.08999 * 109.47110 * 55.32106 * 15 13 12 37 37 H 0.97005 * 120.00249 * 354.74726 * 18 16 13 38 38 H 1.07998 * 120.03850 * 359.97159 * 20 19 18 39 39 H 1.08004 * 119.96276 * 180.29587 * 21 20 19 40 40 H 1.08003 * 119.92694 * 179.70084 * 22 21 20 41 41 H 0.97006 * 120.00157 * 150.00255 * 25 24 23 42 42 H 0.96996 * 120.00043 * 329.99538 * 25 24 23 43 43 H 1.08000 * 120.03431 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1475 -2.2863 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1473 -0.1858 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 3.3654 -0.2287 1.5626 14 1 3.9364 -0.0254 0.6566 15 6 3.2567 1.0506 2.3947 16 6 4.0636 -1.2940 2.3680 17 8 3.4958 -2.3367 2.6156 18 7 5.3189 -1.0880 2.8132 19 6 5.9289 -2.0311 3.6476 20 6 5.1646 -2.7589 4.5507 21 6 5.7688 -3.6933 5.3684 22 6 7.1351 -3.8962 5.2976 23 6 7.8994 -3.1694 4.4037 24 16 9.6395 -3.4320 4.3167 25 7 10.3468 -2.3894 5.3915 26 8 9.8731 -4.7419 4.8156 27 8 10.0449 -3.0097 3.0220 28 6 7.3002 -2.2374 3.5786 29 1 -0.3633 0.5613 0.8608 30 1 -0.3633 0.4649 -0.9165 31 1 -0.3633 -1.0262 0.0557 32 1 0.7089 1.1613 -3.4844 33 1 2.0046 -1.6931 1.0708 34 1 4.2487 1.3488 2.7341 35 1 2.8273 1.8454 1.7847 36 1 2.6166 0.8692 3.2581 37 1 5.8010 -0.2878 2.5520 38 1 4.0985 -2.5972 4.6103 39 1 5.1745 -4.2630 6.0676 40 1 7.6058 -4.6242 5.9416 41 1 11.1811 -2.6305 5.8238 42 1 9.9270 -1.5375 5.5887 43 1 7.8978 -1.6703 2.8802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460313657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:50 Heat of formation + Delta-G solvation = -80.560836 kcal Electronic energy + Delta-G solvation = -27172.053450 eV Core-core repulsion = 23151.258582 eV Total energy + Delta-G solvation = -4020.794868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.75091 -38.84549 -37.46284 -36.13837 -36.04821 -34.93295 -33.58897 -33.07023 -31.59442 -30.88983 -29.55908 -27.24292 -25.11155 -24.43020 -23.70837 -22.40595 -20.53162 -19.86047 -19.64244 -18.79346 -17.74498 -17.46884 -17.06879 -16.57243 -16.46189 -16.12356 -15.58762 -15.33202 -14.78159 -14.76263 -14.56893 -14.08097 -13.83295 -13.34283 -13.05633 -12.59530 -12.54722 -12.49226 -12.39707 -12.33184 -12.08095 -12.05444 -11.93706 -11.39312 -11.35915 -11.27729 -11.03111 -10.87399 -10.84606 -10.63395 -10.31982 -10.19143 -10.06525 -9.70415 -9.45356 -9.17306 -8.47427 -8.45633 -7.45944 -6.07480 -4.20535 0.04830 0.51045 0.91045 2.56740 2.78115 2.91896 3.20540 3.22588 3.31643 3.36110 3.47470 4.18704 4.34789 4.48260 4.69168 4.74222 4.89090 5.05011 5.11350 5.20810 5.24464 5.36794 5.50889 5.56668 5.63521 5.71092 5.89428 5.95205 6.02838 6.13643 6.24190 6.48573 6.61163 6.64729 6.81192 7.10099 7.17602 7.23849 7.42075 7.68022 7.99273 8.05166 8.10808 8.20746 8.54712 8.91379 9.48341 10.93399 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.002487 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.673884 B =11256.116436 C =12147.344606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.208 3.792 3 H 0.035 0.965 4 C -0.549 4.549 5 H 0.054 0.946 6 C 0.069 3.931 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.674 5.674 13 C 0.074 3.926 14 H 0.079 0.921 15 C -0.132 4.132 16 C 0.518 3.482 17 O -0.511 6.511 18 N -0.679 5.679 19 C 0.141 3.859 20 C -0.064 4.064 21 C -0.119 4.119 22 C -0.039 4.039 23 C -0.658 4.658 24 S 2.705 3.295 25 N -1.249 6.249 26 O -0.963 6.963 27 O -0.960 6.960 28 C -0.057 4.057 29 H 0.014 0.986 30 H 0.084 0.916 31 H 0.025 0.975 32 H 0.262 0.738 33 H 0.344 0.656 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.414 0.586 38 H 0.147 0.853 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.420 0.580 42 H 0.417 0.583 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.266 -1.661 19.279 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.101 3.899 3 H 0.053 0.947 4 C -0.588 4.588 5 H 0.072 0.928 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.308 5.308 13 C -0.040 4.040 14 H 0.097 0.903 15 C -0.191 4.191 16 C 0.307 3.693 17 O -0.384 6.384 18 N -0.326 5.326 19 C 0.046 3.954 20 C -0.085 4.085 21 C -0.138 4.138 22 C -0.060 4.060 23 C -0.746 4.746 24 S 2.793 3.207 25 N -0.923 5.923 26 O -0.953 6.953 27 O -0.949 6.949 28 C -0.079 4.079 29 H 0.033 0.967 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.164 0.836 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.251 0.749 38 H 0.165 0.835 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.250 0.750 42 H 0.244 0.756 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 15.715 -2.563 19.022 24.806 hybrid contribution 0.533 0.076 -1.375 1.476 sum 16.248 -2.486 17.647 24.116 Atomic orbital electron populations 1.21672 0.97416 0.98852 1.00421 1.19233 0.92685 0.94021 0.84000 0.94691 1.21892 1.32116 1.12877 0.91936 0.92825 1.24918 0.94710 0.94798 0.98978 1.69885 1.36209 1.22680 1.23506 0.86590 0.78792 0.79782 0.83156 1.19873 1.20837 1.20935 1.61029 1.17650 1.11539 1.40614 1.21393 0.93162 0.92507 0.96971 0.90329 1.21754 1.00697 0.96302 1.00309 1.21509 0.80112 0.88864 0.78803 1.90669 1.64681 1.27075 1.55941 1.43750 1.16396 1.23376 1.49048 1.17845 0.91772 0.93659 0.92172 1.21641 1.01527 0.94105 0.91185 1.21225 0.94568 0.98331 0.99713 1.20887 0.94290 0.95757 0.95034 1.30404 1.25456 1.09650 1.09062 1.01470 0.73026 0.72912 0.73264 1.53143 1.38118 1.34613 1.66380 1.93597 1.84663 1.36614 1.80421 1.93626 1.80552 1.82262 1.38441 1.20662 0.94147 0.96120 0.96983 0.96719 0.89752 0.95600 0.92839 0.83604 0.93250 0.90930 0.91903 0.74947 0.83548 0.84512 0.84056 0.74981 0.75589 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.34 37.15 0.35 -2.68 16 2 C 0.21 5.03 2.40 -68.87 -0.17 4.86 16 3 H 0.04 0.89 7.08 -51.93 -0.37 0.53 16 4 C -0.55 -14.60 8.27 -34.44 -0.28 -14.88 16 5 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 6 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 7 N -0.88 -24.46 11.30 55.43 0.63 -23.84 16 8 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.67 -14.13 5.92 -102.17 -0.60 -14.73 16 13 C 0.07 1.25 2.84 -68.87 -0.20 1.06 16 14 H 0.08 1.43 7.65 -51.92 -0.40 1.03 16 15 C -0.13 -1.85 9.31 37.16 0.35 -1.50 16 16 C 0.52 8.23 6.92 -10.99 -0.08 8.15 16 17 O -0.51 -9.62 13.32 5.56 0.07 -9.55 16 18 N -0.68 -8.14 5.16 -9.86 -0.05 -8.19 16 19 C 0.14 1.69 6.29 -83.69 -0.53 1.16 16 20 C -0.06 -0.77 8.66 -39.39 -0.34 -1.11 16 21 C -0.12 -1.16 10.04 -39.61 -0.40 -1.56 16 22 C -0.04 -0.36 9.52 -39.55 -0.38 -0.74 16 23 C -0.66 -6.16 5.97 -39.61 -0.24 -6.40 16 24 S 2.71 22.99 6.28 -107.50 -0.68 22.31 16 25 N -1.25 -5.11 9.52 60.35 0.57 -4.53 16 26 O -0.96 -10.93 17.28 -57.17 -0.99 -11.91 16 27 O -0.96 -11.59 17.28 -57.17 -0.99 -12.58 16 28 C -0.06 -0.59 9.44 -39.39 -0.37 -0.96 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 2.22 5.99 -51.93 -0.31 1.90 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.34 7.72 7.17 -39.29 -0.28 7.44 16 34 H 0.05 0.51 7.56 -51.93 -0.39 0.12 16 35 H 0.07 1.10 7.42 -51.93 -0.39 0.71 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.41 3.64 8.35 -40.82 -0.34 3.30 16 38 H 0.15 1.94 6.39 -52.49 -0.34 1.61 16 39 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.14 1.02 7.61 -52.48 -0.40 0.62 16 41 H 0.42 1.04 8.96 -34.48 -0.31 0.73 16 42 H 0.42 0.81 8.96 -34.47 -0.31 0.50 16 43 H 0.15 1.25 7.61 -52.49 -0.40 0.85 16 LS Contribution 370.49 15.07 5.58 5.58 Total: -1.00 -35.52 370.49 -9.30 -44.83 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.46 Total: 9.46 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -2.37 Total: -12.84 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.55 Total: -51.30 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.90 Total: -34.04 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 22.99 SS G_CDS: -0.68 Total: 22.31 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.52 -9.30 -44.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460313657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.736 kcal (2) G-P(sol) polarization free energy of solvation -35.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds