Wall clock time and date at job start Tue Mar 31 2020 23:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47637 * 2 1 4 4 C 1.50697 * 109.47285 * 240.00010 * 2 1 3 5 5 H 1.08005 * 120.00073 * 240.00122 * 4 2 1 6 6 C 1.37875 * 120.00155 * 59.99794 * 4 2 1 7 7 N 1.31517 * 119.99837 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00156 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47245 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46842 * 120.00038 * 8 6 4 11 11 H 1.48498 * 109.47452 * 240.00213 * 8 6 4 12 12 N 1.46906 * 109.47450 * 119.99731 * 2 1 3 13 13 C 1.46897 * 111.00479 * 205.16765 * 12 2 1 14 14 H 1.09008 * 109.46700 * 323.92014 * 13 12 2 15 15 C 1.52996 * 109.47025 * 83.91647 * 13 12 2 16 16 C 1.50697 * 109.47190 * 203.92018 * 13 12 2 17 17 O 1.21282 * 120.00208 * 359.97438 * 16 13 12 18 18 N 1.34775 * 119.99949 * 179.97438 * 16 13 12 19 19 C 1.39921 * 120.00148 * 175.02342 * 18 16 13 20 20 C 1.38900 * 120.06698 * 326.96172 * 19 18 16 21 21 C 1.38089 * 119.92302 * 179.69899 * 20 19 18 22 22 C 1.38306 * 120.07376 * 0.59773 * 21 20 19 23 23 C 1.38254 * 120.14277 * 359.67512 * 22 21 20 24 24 S 1.76199 * 119.96864 * 180.02562 * 23 22 21 25 25 N 1.65602 * 107.21495 * 270.02490 * 24 23 22 26 26 O 1.42101 * 106.40174 * 23.55951 * 24 23 22 27 27 O 1.42093 * 106.40333 * 156.48399 * 24 23 22 28 28 C 1.38139 * 120.06926 * 0.02677 * 23 22 21 29 29 H 1.08998 * 109.46854 * 303.10505 * 1 2 3 30 30 H 1.09000 * 109.46986 * 63.10106 * 1 2 3 31 31 H 1.09001 * 109.46989 * 183.10686 * 1 2 3 32 32 H 0.97001 * 119.99873 * 180.02562 * 7 6 4 33 33 H 1.00902 * 110.99771 * 81.21276 * 12 2 1 34 34 H 1.09002 * 109.47435 * 175.31819 * 15 13 12 35 35 H 1.09001 * 109.47501 * 295.31970 * 15 13 12 36 36 H 1.08999 * 109.47110 * 55.32106 * 15 13 12 37 37 H 0.97005 * 120.00249 * 354.74726 * 18 16 13 38 38 H 1.07998 * 120.03850 * 359.97159 * 20 19 18 39 39 H 1.08004 * 119.96276 * 180.29587 * 21 20 19 40 40 H 1.08003 * 119.92694 * 179.70084 * 22 21 20 41 41 H 0.97006 * 120.00157 * 150.00255 * 25 24 23 42 42 H 0.96996 * 120.00043 * 329.99538 * 25 24 23 43 43 H 1.08000 * 120.03431 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1475 -2.2863 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1473 -0.1858 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 3.3654 -0.2287 1.5626 14 1 3.9364 -0.0254 0.6566 15 6 3.2567 1.0506 2.3947 16 6 4.0636 -1.2940 2.3680 17 8 3.4958 -2.3367 2.6156 18 7 5.3189 -1.0880 2.8132 19 6 5.9289 -2.0311 3.6476 20 6 5.1646 -2.7589 4.5507 21 6 5.7688 -3.6933 5.3684 22 6 7.1351 -3.8962 5.2976 23 6 7.8994 -3.1694 4.4037 24 16 9.6395 -3.4320 4.3167 25 7 10.3468 -2.3894 5.3915 26 8 9.8731 -4.7419 4.8156 27 8 10.0449 -3.0097 3.0220 28 6 7.3002 -2.2374 3.5786 29 1 -0.3633 0.5613 0.8608 30 1 -0.3633 0.4649 -0.9165 31 1 -0.3633 -1.0262 0.0557 32 1 0.7089 1.1613 -3.4844 33 1 2.0046 -1.6931 1.0708 34 1 4.2487 1.3488 2.7341 35 1 2.8273 1.8454 1.7847 36 1 2.6166 0.8692 3.2581 37 1 5.8010 -0.2878 2.5520 38 1 4.0985 -2.5972 4.6103 39 1 5.1745 -4.2630 6.0676 40 1 7.6058 -4.6242 5.9416 41 1 11.1811 -2.6305 5.8238 42 1 9.9270 -1.5375 5.5887 43 1 7.8978 -1.6703 2.8802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460313657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:49 Heat of formation + Delta-G solvation = -110.399344 kcal Electronic energy + Delta-G solvation = -27173.347345 eV Core-core repulsion = 23151.258582 eV Total energy + Delta-G solvation = -4022.088762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.83397 -39.86383 -38.27298 -37.70227 -36.94742 -36.02790 -34.86816 -34.03523 -32.52057 -32.37293 -30.64098 -28.83443 -27.18563 -25.56633 -24.58466 -23.40115 -22.04941 -21.25839 -20.44435 -19.60495 -18.94022 -18.33402 -18.14394 -17.77871 -17.48479 -17.13038 -16.69770 -16.50802 -16.39345 -15.96778 -15.54095 -15.29775 -14.87687 -14.78263 -14.32670 -14.08963 -13.67582 -13.46102 -13.36629 -13.25090 -13.20664 -13.16458 -13.11529 -12.95542 -12.81180 -12.77084 -12.51796 -12.26072 -12.21678 -12.05022 -11.95584 -11.61098 -11.31991 -11.15794 -10.86355 -10.53223 -10.40303 -9.39481 -9.20337 -8.11530 -6.32671 -0.64580 -0.29747 0.07365 1.34509 1.38634 1.40887 1.47961 1.81396 2.17421 2.37219 2.42723 2.77043 3.10222 3.44582 3.52101 3.57164 3.80624 4.00520 4.01791 4.20114 4.30410 4.36187 4.40257 4.61550 4.75528 4.86305 4.86925 4.96271 5.06152 5.14939 5.20591 5.22195 5.26992 5.29973 5.34609 5.43906 5.62627 5.76878 6.01671 6.09978 6.18034 6.33045 6.38286 6.68755 6.90139 6.97523 7.39260 8.86615 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.002487 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.673884 B =11256.116436 C =12147.344606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.215 3.785 3 H 0.020 0.980 4 C -0.562 4.562 5 H 0.042 0.958 6 C 0.026 3.974 7 N -0.907 5.907 8 Si 0.947 3.053 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.276 1.276 12 N -0.674 5.674 13 C 0.070 3.930 14 H 0.068 0.932 15 C -0.124 4.124 16 C 0.523 3.477 17 O -0.546 6.546 18 N -0.661 5.661 19 C 0.119 3.881 20 C -0.082 4.082 21 C -0.119 4.119 22 C -0.037 4.037 23 C -0.657 4.657 24 S 2.734 3.266 25 N -1.229 6.229 26 O -0.990 6.990 27 O -0.995 6.995 28 C -0.056 4.056 29 H 0.029 0.971 30 H 0.062 0.938 31 H 0.021 0.979 32 H 0.264 0.736 33 H 0.333 0.667 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.429 0.571 38 H 0.129 0.871 39 H 0.160 0.840 40 H 0.164 0.836 41 H 0.431 0.569 42 H 0.430 0.570 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.284 -1.700 20.517 27.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.107 3.893 3 H 0.038 0.962 4 C -0.601 4.601 5 H 0.061 0.939 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.774 3.226 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.201 1.201 12 N -0.306 5.306 13 C -0.044 4.044 14 H 0.086 0.914 15 C -0.182 4.182 16 C 0.312 3.688 17 O -0.422 6.422 18 N -0.308 5.308 19 C 0.024 3.976 20 C -0.102 4.102 21 C -0.138 4.138 22 C -0.056 4.056 23 C -0.744 4.744 24 S 2.821 3.179 25 N -0.909 5.909 26 O -0.980 6.980 27 O -0.984 6.984 28 C -0.078 4.078 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.152 0.848 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.269 0.731 38 H 0.147 0.853 39 H 0.177 0.823 40 H 0.182 0.818 41 H 0.264 0.736 42 H 0.260 0.740 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 17.777 -2.562 20.288 27.096 hybrid contribution -0.010 0.079 -1.646 1.648 sum 17.767 -2.483 18.642 25.872 Atomic orbital electron populations 1.21546 0.97605 0.98499 0.99948 1.19015 0.92576 0.93166 0.84543 0.96208 1.22108 1.32090 1.12675 0.93225 0.93933 1.25578 0.94942 0.95472 1.01460 1.69979 1.36831 1.23561 1.24190 0.85679 0.78251 0.78658 0.80042 1.20203 1.20537 1.20103 1.60960 1.20430 1.10536 1.38659 1.21488 0.91289 0.94255 0.97373 0.91444 1.21715 1.03130 0.94057 0.99316 1.21156 0.81134 0.87901 0.78655 1.90657 1.65890 1.28163 1.57495 1.43426 1.15056 1.24041 1.48296 1.17987 0.92496 0.94398 0.92757 1.21653 1.00894 0.95290 0.92376 1.21493 0.95151 0.97678 0.99481 1.21226 0.94058 0.95550 0.94801 1.30542 1.25916 1.09224 1.08762 1.00434 0.72283 0.72396 0.72765 1.52684 1.38278 1.34450 1.65473 1.93561 1.84921 1.38735 1.80772 1.93592 1.81005 1.82791 1.41029 1.20832 0.93479 0.96291 0.97172 0.95157 0.91907 0.96025 0.92625 0.84802 0.89110 0.92243 0.92036 0.73132 0.85343 0.82255 0.81809 0.73567 0.73956 0.82211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 9.34 71.98 0.67 -5.10 16 2 C 0.22 10.61 2.40 44.17 0.11 10.71 16 3 H 0.02 1.04 7.08 -2.39 -0.02 1.02 16 4 C -0.56 -30.36 8.27 25.60 0.21 -30.14 16 5 H 0.04 2.35 7.74 -2.91 -0.02 2.32 16 6 C 0.03 1.42 5.30 84.65 0.45 1.87 16 7 N -0.91 -50.56 11.30 21.45 0.24 -50.32 16 8 Si 0.95 43.30 29.54 68.60 2.03 45.33 16 9 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 N -0.67 -28.76 5.92 -477.16 -2.82 -31.59 16 13 C 0.07 2.38 2.84 44.17 0.13 2.51 16 14 H 0.07 2.48 7.65 -2.38 -0.02 2.46 16 15 C -0.12 -3.35 9.31 71.98 0.67 -2.68 16 16 C 0.52 16.58 6.92 87.66 0.61 17.19 16 17 O -0.55 -20.99 13.32 -3.04 -0.04 -21.03 16 18 N -0.66 -15.20 5.16 -303.51 -1.56 -16.77 16 19 C 0.12 2.71 6.29 38.16 0.24 2.95 16 20 C -0.08 -1.91 8.66 22.39 0.19 -1.72 16 21 C -0.12 -2.13 10.04 22.25 0.22 -1.90 16 22 C -0.04 -0.58 9.52 22.29 0.21 -0.37 16 23 C -0.66 -10.93 5.97 22.25 0.13 -10.80 16 24 S 2.73 40.88 6.28 -56.49 -0.35 40.53 16 25 N -1.23 -6.63 9.52 37.02 0.35 -6.28 16 26 O -0.99 -20.54 17.28 -128.00 -2.21 -22.75 16 27 O -1.00 -22.48 17.28 -128.00 -2.21 -24.69 16 28 C -0.06 -1.05 9.44 22.39 0.21 -0.84 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 3.35 5.99 -2.39 -0.01 3.34 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 33 H 0.33 15.41 7.17 -89.69 -0.64 14.77 16 34 H 0.09 1.66 7.56 -2.39 -0.02 1.64 16 35 H 0.06 1.77 7.42 -2.39 -0.02 1.75 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.43 6.80 8.35 -92.70 -0.77 6.03 16 38 H 0.13 3.48 6.39 -2.91 -0.02 3.46 16 39 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.16 1.86 7.61 -2.91 -0.02 1.84 16 41 H 0.43 0.88 8.96 -96.74 -0.87 0.02 16 42 H 0.43 0.34 8.96 -96.75 -0.87 -0.53 16 43 H 0.16 2.43 7.61 -2.91 -0.02 2.41 16 Total: -1.00 -76.96 370.49 -4.59 -81.55 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -2.05 Total: 24.35 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 4.05 Total: -18.33 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -3.79 Total: -104.95 kcal Atomic # 8 Polarization: -64.01 SS G_CDS: -4.46 Total: -68.47 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 40.88 SS G_CDS: -0.35 Total: 40.53 kcal Total: -76.96 -4.59 -81.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460313657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.851 kcal (2) G-P(sol) polarization free energy of solvation -76.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds