Wall clock time and date at job start Tue Mar 31 2020 23:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.46996 * 2 1 4 4 C 1.46498 * 120.00052 * 270.00036 * 3 2 1 5 5 C 1.52996 * 109.47134 * 269.99989 * 4 3 2 6 6 S 1.81402 * 109.47484 * 179.97438 * 5 4 3 7 7 C 1.81395 * 101.92288 * 179.97438 * 6 5 4 8 8 O 1.42099 * 108.57811 * 294.49026 * 6 5 4 9 9 O 1.42105 * 108.57438 * 65.51016 * 6 5 4 10 10 C 1.34777 * 119.99967 * 89.99376 * 3 2 1 11 11 O 1.21583 * 119.99881 * 179.97438 * 10 3 2 12 12 N 1.34777 * 120.00316 * 0.02562 * 10 3 2 13 13 C 1.39455 * 120.00065 * 184.99888 * 12 10 3 14 14 C 1.38645 * 119.64555 * 185.31356 * 13 12 10 15 15 C 1.40827 * 118.67359 * 179.72287 * 14 13 12 16 16 C 1.41540 * 120.99565 * 180.25513 * 15 14 13 17 17 H 1.08000 * 119.99540 * 153.80221 * 16 15 14 18 18 C 1.40030 * 120.00498 * 333.79288 * 16 15 14 19 19 N 1.30747 * 119.99529 * 350.10009 * 18 16 15 20 20 Si 1.86800 * 120.00283 * 170.09116 * 18 16 15 21 21 H 1.48504 * 109.46684 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46927 * 120.00308 * 20 18 16 23 23 H 1.48504 * 109.47088 * 240.00630 * 20 18 16 24 24 C 1.41160 * 118.00284 * 0.28385 * 15 14 13 25 25 C 1.36590 * 119.13251 * 359.97438 * 24 15 14 26 26 N 1.32071 * 121.25735 * 0.03367 * 25 24 15 27 27 H 1.08998 * 109.46830 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47146 * 299.99643 * 1 2 3 29 29 H 1.08995 * 109.47010 * 60.00515 * 1 2 3 30 30 H 1.08990 * 109.47188 * 239.99842 * 2 1 3 31 31 H 1.09004 * 109.46811 * 119.99559 * 2 1 3 32 32 H 1.09003 * 109.47343 * 29.99529 * 4 3 2 33 33 H 1.08999 * 109.47530 * 149.99679 * 4 3 2 34 34 H 1.09009 * 109.47042 * 300.00005 * 5 4 3 35 35 H 1.08999 * 109.47166 * 59.99466 * 5 4 3 36 36 H 1.09004 * 109.47433 * 60.00196 * 7 6 5 37 37 H 1.08996 * 109.47239 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.47355 * 300.00087 * 7 6 5 39 39 H 0.97003 * 119.99474 * 4.99462 * 12 10 3 40 40 H 1.08002 * 120.66539 * 0.02562 * 14 13 12 41 41 H 0.96998 * 119.99440 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.43879 * 179.97438 * 24 15 14 43 43 H 1.07999 * 119.37454 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8315 -1.7104 6 16 4.0097 2.6860 -3.2817 7 6 5.7457 2.2717 -3.6057 8 8 3.2049 2.0841 -4.2864 9 8 3.9124 4.0864 -3.0614 10 6 2.2429 2.0166 1.1672 11 8 2.6486 3.1627 1.1672 12 7 2.0186 1.3812 2.3344 13 6 2.1504 2.0699 3.5399 14 6 2.0269 1.3843 4.7385 15 6 2.1695 2.0989 5.9436 16 6 2.0582 1.4472 7.1951 17 1 2.5605 1.8521 8.0612 18 6 1.2968 0.2777 7.3103 19 7 0.5349 -0.1065 6.3197 20 14 1.3698 -0.7337 8.8791 21 1 2.2994 -0.0887 9.8410 22 1 0.0141 -0.8141 9.4797 23 1 1.8537 -2.1019 8.5640 24 6 2.4261 3.4848 5.8658 25 6 2.5261 4.0747 4.6380 26 7 2.3866 3.3736 3.5274 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.5818 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 4.3883 2.2156 -0.9507 35 1 3.8745 0.7622 -1.8406 36 1 5.8534 1.1896 -3.6798 37 1 6.0606 2.7327 -4.5419 38 1 6.3663 2.6436 -2.7905 39 1 1.7656 0.4447 2.3360 40 1 1.8301 0.3224 4.7480 41 1 0.0077 -0.9168 6.3994 42 1 2.5420 4.0712 6.7654 43 1 2.7227 5.1347 4.5739 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467114807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:58 Heat of formation + Delta-G solvation = -47.699318 kcal Electronic energy + Delta-G solvation = -27496.097692 eV Core-core repulsion = 23476.727807 eV Total energy + Delta-G solvation = -4019.369885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.19534 -38.27792 -37.19555 -36.27158 -35.97359 -34.50237 -33.90027 -32.29017 -30.53647 -30.05997 -29.66976 -28.31683 -26.02081 -24.23667 -23.48642 -21.94259 -21.23333 -19.35166 -19.10867 -18.14791 -17.61574 -17.14844 -16.38630 -16.28565 -16.03486 -15.50270 -15.09439 -14.78906 -14.55150 -14.21714 -14.05976 -13.89903 -13.62322 -13.53521 -13.51559 -13.25238 -12.87327 -12.62403 -12.58316 -12.30785 -12.25238 -12.20134 -12.07491 -11.49734 -11.42574 -11.35085 -11.26632 -11.21209 -10.93523 -10.91008 -10.28647 -10.12896 -9.79523 -9.59262 -9.42145 -8.67566 -7.99088 -7.74745 -7.05572 -6.76944 -4.64909 -0.30330 2.46245 2.65407 2.77191 2.78255 2.99747 3.05170 3.21337 3.37351 3.75008 3.75135 3.83357 4.12907 4.40269 4.44931 4.46422 4.68645 4.70467 4.78300 5.05156 5.12579 5.20838 5.29909 5.38061 5.62494 5.64331 5.68454 5.72771 5.90661 6.13263 6.41772 6.57586 6.61511 6.78607 6.91942 7.10817 7.14701 7.39751 7.46710 7.84077 8.04553 8.28239 8.44043 8.70387 8.74100 9.08137 9.69991 10.07199 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.002535 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.617244 B =11044.527367 C =11805.955660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.103 3.897 3 N -0.629 5.629 4 C 0.150 3.850 5 C -0.632 4.632 6 S 2.425 3.575 7 C -0.656 4.656 8 O -0.943 6.943 9 O -0.932 6.932 10 C 0.693 3.307 11 O -0.526 6.526 12 N -0.665 5.665 13 C 0.352 3.648 14 C -0.242 4.242 15 C 0.143 3.857 16 C -0.453 4.453 17 H 0.082 0.918 18 C 0.075 3.925 19 N -0.795 5.795 20 Si 0.914 3.086 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.272 1.272 24 C -0.282 4.282 25 C 0.119 3.881 26 N -0.553 5.553 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.140 0.860 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.404 0.596 40 H 0.132 0.868 41 H 0.280 0.720 42 H 0.102 0.898 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.780 -5.617 -15.550 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.020 4.020 3 N -0.369 5.369 4 C 0.025 3.975 5 C -0.762 4.762 6 S 2.606 3.394 7 C -0.805 4.805 8 O -0.940 6.940 9 O -0.929 6.929 10 C 0.394 3.606 11 O -0.397 6.397 12 N -0.315 5.315 13 C 0.126 3.874 14 C -0.268 4.268 15 C 0.134 3.866 16 C -0.485 4.485 17 H 0.100 0.900 18 C -0.143 4.143 19 N -0.421 5.421 20 Si 0.739 3.261 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.197 1.197 24 C -0.306 4.306 25 C -0.034 4.034 26 N -0.272 5.272 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.158 0.842 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.241 0.759 40 H 0.150 0.850 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.404 -3.982 -16.977 17.985 hybrid contribution 0.341 -2.137 2.022 2.962 sum 4.745 -6.119 -14.955 16.841 Atomic orbital electron populations 1.22258 0.95623 1.02433 1.03140 1.21535 0.94850 0.82704 1.02934 1.47227 1.71046 1.14317 1.04327 1.20803 0.90552 1.00400 0.85793 1.30852 1.08501 1.14586 1.22255 1.07719 0.78093 0.76306 0.77306 1.30265 1.25725 1.12319 1.12201 1.93594 1.65720 1.79032 1.55613 1.93639 1.85524 1.28169 1.85561 1.16064 0.79536 0.84882 0.80095 1.91024 1.48527 1.15286 1.84861 1.42725 1.71466 1.13792 1.03479 1.17995 0.96807 0.89492 0.83145 1.21608 1.14458 1.00975 0.89777 1.17584 0.85938 0.90186 0.92851 1.19615 1.26832 1.06618 0.95390 0.90019 1.25950 0.93156 0.96986 0.98212 1.69758 1.19125 1.21383 1.31873 0.86161 0.79044 0.79512 0.81427 1.18357 1.19884 1.19726 1.21697 1.15797 0.95738 0.97325 1.21477 0.96340 0.97824 0.87785 1.67181 1.23193 1.05764 1.31014 0.91356 0.91784 0.92143 0.90183 0.90618 0.89211 0.88040 0.84192 0.85067 0.85437 0.85287 0.85174 0.75936 0.85046 0.90920 0.87995 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 10.24 37.16 0.38 -1.36 16 2 C 0.10 1.03 5.94 -4.04 -0.02 1.01 16 3 N -0.63 -8.59 2.47 -179.43 -0.44 -9.03 16 4 C 0.15 1.77 5.41 -4.04 -0.02 1.75 16 5 C -0.63 -5.40 6.13 37.16 0.23 -5.17 16 6 S 2.42 20.26 5.36 -107.50 -0.58 19.69 16 7 C -0.66 -3.11 10.62 101.05 1.07 -2.04 16 8 O -0.94 -10.41 18.10 -57.83 -1.05 -11.45 16 9 O -0.93 -12.22 18.10 -57.83 -1.05 -13.27 16 10 C 0.69 13.22 8.23 -86.92 -0.72 12.50 16 11 O -0.53 -12.24 14.22 5.29 0.08 -12.17 16 12 N -0.67 -13.05 5.27 -15.86 -0.08 -13.14 16 13 C 0.35 8.49 7.41 -154.68 -1.15 7.35 16 14 C -0.24 -6.07 8.62 -38.45 -0.33 -6.40 16 15 C 0.14 3.72 5.60 -106.55 -0.60 3.12 16 16 C -0.45 -11.50 9.14 -37.65 -0.34 -11.84 16 17 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 18 C 0.07 1.78 5.31 -17.34 -0.09 1.68 16 19 N -0.80 -19.19 10.70 55.55 0.59 -18.59 16 20 Si 0.91 17.69 29.57 -169.99 -5.03 12.66 16 21 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 24 C -0.28 -6.88 9.85 -39.07 -0.38 -7.27 16 25 C 0.12 2.88 11.10 -18.04 -0.20 2.68 16 26 N -0.55 -14.17 7.90 -12.76 -0.10 -14.27 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 31 H 0.08 0.73 6.29 -51.93 -0.33 0.41 16 32 H 0.09 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.10 1.42 7.42 -51.93 -0.39 1.03 16 34 H 0.14 1.32 8.14 -51.92 -0.42 0.89 16 35 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 37 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.13 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.40 6.61 6.39 -40.82 -0.26 6.35 16 40 H 0.13 3.26 6.11 -52.49 -0.32 2.94 16 41 H 0.28 6.09 8.29 -40.82 -0.34 5.75 16 42 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 43 H 0.12 2.59 8.06 -52.49 -0.42 2.16 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -37.49 376.37 -10.06 -47.55 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -5.91 Total: 10.34 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -2.18 Total: -3.99 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.03 Total: -55.03 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -2.02 Total: -36.89 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Atomic # 16 Polarization: 20.26 SS G_CDS: -0.58 Total: 19.69 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.49 -10.06 -47.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467114807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.147 kcal (2) G-P(sol) polarization free energy of solvation -37.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds