Wall clock time and date at job start Tue Mar 31 2020 23:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46511 * 109.47106 * 2 1 4 4 C 1.46491 * 119.99754 * 270.00010 * 3 2 1 5 5 C 1.53000 * 109.47409 * 269.99632 * 4 3 2 6 6 S 1.81397 * 109.47580 * 180.02562 * 5 4 3 7 7 C 1.81391 * 101.92258 * 180.02562 * 6 5 4 8 8 O 1.42106 * 108.57473 * 294.49075 * 6 5 4 9 9 O 1.42102 * 108.57739 * 65.50864 * 6 5 4 10 10 C 1.34777 * 119.99684 * 89.99829 * 3 2 1 11 11 O 1.21571 * 119.99679 * 179.97438 * 10 3 2 12 12 N 1.34776 * 120.00254 * 0.02562 * 10 3 2 13 13 C 1.39244 * 120.00101 * 185.78748 * 12 10 3 14 14 C 1.39682 * 119.57402 * 18.76061 * 13 12 10 15 15 C 1.38647 * 119.49187 * 180.02562 * 14 13 12 16 16 C 1.38349 * 118.67542 * 359.74477 * 15 14 13 17 17 C 1.40569 * 119.12768 * 0.50077 * 16 15 14 18 18 C 1.41336 * 119.78782 * 179.77329 * 17 16 15 19 19 H 1.08000 * 119.99682 * 8.65518 * 18 17 16 20 20 C 1.40026 * 119.99972 * 188.65821 * 18 17 16 21 21 N 1.30745 * 119.99940 * 195.96303 * 20 18 17 22 22 Si 1.86800 * 120.00328 * 15.95426 * 20 18 17 23 23 H 1.48496 * 109.47436 * 270.00683 * 22 20 18 24 24 H 1.48498 * 109.46777 * 30.00449 * 22 20 18 25 25 H 1.48497 * 109.47172 * 150.00209 * 22 20 18 26 26 N 1.31903 * 119.57573 * 198.78736 * 13 12 10 27 27 H 1.09004 * 109.47448 * 299.99803 * 1 2 3 28 28 H 1.08999 * 109.47182 * 59.99936 * 1 2 3 29 29 H 1.09001 * 109.47213 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47448 * 240.00197 * 2 1 3 31 31 H 1.08999 * 109.47182 * 120.00064 * 2 1 3 32 32 H 1.08998 * 109.47495 * 29.99805 * 4 3 2 33 33 H 1.09005 * 109.46849 * 149.99837 * 4 3 2 34 34 H 1.09004 * 109.47308 * 300.00697 * 5 4 3 35 35 H 1.08997 * 109.47006 * 59.99970 * 5 4 3 36 36 H 1.09000 * 109.47295 * 59.99766 * 7 6 5 37 37 H 1.09008 * 109.47434 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.47488 * 299.99997 * 7 6 5 39 39 H 0.97000 * 120.00065 * 5.78275 * 12 10 3 40 40 H 1.07994 * 120.25624 * 0.02562 * 14 13 12 41 41 H 1.08010 * 120.66049 * 180.02562 * 15 14 13 42 42 H 1.08001 * 120.43911 * 180.24939 * 16 15 14 43 43 H 0.97001 * 120.00349 * 354.92195 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.7074 1.8315 -1.7104 6 16 4.0100 2.6872 -3.2810 7 6 5.7455 2.2716 -3.6059 8 8 3.2052 2.0862 -4.2862 9 8 3.9129 4.0875 -3.0597 10 6 2.2429 2.0166 1.1672 11 8 2.6485 3.1626 1.1672 12 7 2.0187 1.3811 2.3344 13 6 2.1343 2.0730 3.5373 14 6 2.0897 3.4691 3.5366 15 6 2.2055 4.1562 4.7352 16 6 2.3574 3.4316 5.9039 17 6 2.4001 2.0281 5.8381 18 6 2.5597 1.2741 7.0229 19 1 2.5083 1.7626 7.9847 20 6 2.7845 -0.1060 6.9495 21 7 2.6234 -0.8519 8.0112 22 14 3.3144 -0.8816 5.3348 23 1 2.1127 -1.2873 4.5626 24 1 4.0998 0.1024 4.5474 25 1 4.1521 -2.0763 5.6109 26 7 2.2850 1.4016 4.6626 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0283 33 1 2.0954 3.1411 -1.1383 34 1 4.3883 2.2156 -0.9507 35 1 3.8745 0.7623 -1.8407 36 1 5.8521 1.1894 -3.6809 37 1 6.0607 2.7331 -4.5418 38 1 6.3667 2.6421 -2.7905 39 1 1.7767 0.4418 2.3366 40 1 1.9659 4.0091 2.6096 41 1 2.1731 5.2356 4.7567 42 1 2.4462 3.9376 6.8539 43 1 2.4202 -0.4413 8.8662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477035338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:01 Heat of formation + Delta-G solvation = -57.435037 kcal Electronic energy + Delta-G solvation = -27831.387239 eV Core-core repulsion = 23811.595181 eV Total energy + Delta-G solvation = -4019.792058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.67459 -38.53437 -37.28865 -36.46949 -36.29195 -34.81324 -33.59537 -32.45718 -31.05762 -30.26606 -29.95127 -29.00605 -25.40555 -24.45990 -23.74826 -21.90451 -21.48408 -19.51600 -19.20337 -18.60381 -18.10231 -17.36701 -16.79846 -16.41145 -16.39702 -15.68833 -15.23724 -15.00894 -14.87651 -14.42543 -14.15743 -14.01706 -13.77233 -13.61428 -13.57595 -13.38860 -13.03516 -12.74315 -12.52028 -12.39189 -12.29958 -12.26261 -12.22263 -11.88473 -11.62522 -11.50147 -11.42514 -11.16277 -10.98505 -10.90733 -10.35559 -10.02117 -9.79428 -9.42356 -9.11204 -8.92812 -8.51700 -7.92399 -7.39726 -7.28203 -4.76095 -0.39894 2.32978 2.37215 2.51039 2.68030 3.22277 3.35470 3.41452 3.58375 3.66300 3.80409 3.89217 4.26799 4.29776 4.32548 4.39555 4.58886 4.59892 4.63102 4.91037 4.97298 5.07066 5.21688 5.24456 5.47520 5.50495 5.54522 5.57719 5.82664 5.97654 6.07877 6.17774 6.43091 6.55243 6.65755 6.75564 7.16380 7.29746 7.43427 7.62802 7.74502 7.83215 8.15406 8.32559 8.60024 8.68857 9.43514 9.96238 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016660 B = 0.002988 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.272727 B = 9367.400353 C = 9851.746166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.099 3.901 3 N -0.622 5.622 4 C 0.149 3.851 5 C -0.636 4.636 6 S 2.427 3.573 7 C -0.655 4.655 8 O -0.941 6.941 9 O -0.932 6.932 10 C 0.710 3.290 11 O -0.557 6.557 12 N -0.664 5.664 13 C 0.398 3.602 14 C -0.309 4.309 15 C -0.035 4.035 16 C -0.279 4.279 17 C 0.276 3.724 18 C -0.482 4.482 19 H 0.084 0.916 20 C 0.049 3.951 21 N -0.805 5.805 22 Si 1.143 2.857 23 H -0.289 1.289 24 H -0.281 1.281 25 H -0.327 1.327 26 N -0.598 5.598 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.403 0.597 40 H 0.141 0.859 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.010 -0.878 -21.181 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.025 4.025 3 N -0.360 5.360 4 C 0.024 3.976 5 C -0.766 4.766 6 S 2.608 3.392 7 C -0.805 4.805 8 O -0.938 6.938 9 O -0.929 6.929 10 C 0.411 3.589 11 O -0.432 6.432 12 N -0.313 5.313 13 C 0.166 3.834 14 C -0.334 4.334 15 C -0.060 4.060 16 C -0.302 4.302 17 C 0.152 3.848 18 C -0.514 4.514 19 H 0.102 0.898 20 C -0.173 4.173 21 N -0.427 5.427 22 Si 0.977 3.023 23 H -0.216 1.216 24 H -0.208 1.208 25 H -0.260 1.260 26 N -0.323 5.323 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.240 0.760 40 H 0.158 0.842 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.029 -1.835 -22.282 22.449 hybrid contribution 0.139 1.243 1.580 2.015 sum 2.168 -0.592 -20.702 20.824 Atomic orbital electron populations 1.22254 0.95292 1.02774 1.03132 1.21641 0.95098 0.82209 1.03510 1.47126 1.70217 1.14566 1.04139 1.20883 0.90957 1.00347 0.85428 1.30878 1.08145 1.14933 1.22594 1.07671 0.78148 0.76240 0.77184 1.30259 1.25523 1.12423 1.12260 1.93601 1.65773 1.79032 1.55424 1.93638 1.85580 1.28139 1.85532 1.15690 0.78666 0.84511 0.80005 1.90870 1.50884 1.16140 1.85319 1.42481 1.71025 1.14194 1.03591 1.17795 0.93593 0.88334 0.83682 1.21545 1.19781 0.92446 0.99637 1.20921 0.94541 0.98099 0.92402 1.21600 1.16441 0.94708 0.97440 1.18161 0.87881 0.89858 0.88892 1.20646 1.43031 0.94924 0.92843 0.89816 1.27626 0.89737 0.94439 1.05466 1.70610 1.30461 1.39830 1.01807 0.82134 0.76587 0.72051 0.71534 1.21639 1.20802 1.25953 1.66119 1.28970 1.39007 0.98161 0.91861 0.91933 0.91039 0.89616 0.90339 0.88780 0.87838 0.84119 0.84846 0.85362 0.85223 0.85147 0.76020 0.84172 0.87656 0.87737 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 10.24 37.15 0.38 -1.11 16 2 C 0.10 0.87 5.94 -4.04 -0.02 0.85 16 3 N -0.62 -7.42 2.47 -179.43 -0.44 -7.86 16 4 C 0.15 1.47 5.41 -4.05 -0.02 1.45 16 5 C -0.64 -4.54 6.13 37.16 0.23 -4.31 16 6 S 2.43 17.28 5.36 -107.50 -0.58 16.71 16 7 C -0.66 -2.56 10.62 101.05 1.07 -1.48 16 8 O -0.94 -9.34 18.10 -57.83 -1.05 -10.39 16 9 O -0.93 -10.93 18.10 -57.83 -1.05 -11.98 16 10 C 0.71 11.97 8.12 -86.92 -0.71 11.26 16 11 O -0.56 -11.06 12.72 5.30 0.07 -10.99 16 12 N -0.66 -12.33 5.29 -15.79 -0.08 -12.41 16 13 C 0.40 9.13 7.51 -155.00 -1.16 7.96 16 14 C -0.31 -7.04 8.83 -38.89 -0.34 -7.39 16 15 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 16 C -0.28 -6.70 9.83 -38.66 -0.38 -7.08 16 17 C 0.28 7.25 6.27 -85.00 -0.53 6.71 16 18 C -0.48 -13.06 9.51 -37.73 -0.36 -13.42 16 19 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 20 C 0.05 1.32 5.51 -17.34 -0.10 1.22 16 21 N -0.81 -21.62 13.65 55.55 0.76 -20.86 16 22 Si 1.14 27.14 25.93 -169.99 -4.41 22.74 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.85 6.55 56.52 0.37 -6.48 16 25 H -0.33 -7.60 7.11 56.52 0.40 -7.20 16 26 N -0.60 -15.06 5.07 -10.26 -0.05 -15.11 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 31 H 0.08 0.72 6.28 -51.93 -0.33 0.40 16 32 H 0.09 0.68 8.07 -51.93 -0.42 0.26 16 33 H 0.10 1.19 7.42 -51.93 -0.39 0.81 16 34 H 0.14 1.11 8.14 -51.92 -0.42 0.69 16 35 H 0.13 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 37 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.40 6.58 6.52 -40.82 -0.27 6.32 16 40 H 0.14 3.15 5.33 -52.51 -0.28 2.87 16 41 H 0.11 2.00 8.06 -52.48 -0.42 1.58 16 42 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 43 H 0.28 7.32 8.73 -40.82 -0.36 6.97 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -37.30 371.25 -9.51 -46.81 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.93 Total: 4.27 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -2.34 Total: -6.51 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.18 Total: -56.24 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -2.03 Total: -33.36 kcal Atomic # 14 Polarization: 27.14 SS G_CDS: -4.41 Total: 22.74 kcal Atomic # 16 Polarization: 17.28 SS G_CDS: -0.58 Total: 16.71 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.30 -9.51 -46.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477035338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.624 kcal (2) G-P(sol) polarization free energy of solvation -37.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds