Wall clock time and date at job start Tue Mar 31 2020 23:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35960 * 117.00161 * 2 1 4 4 C 1.37576 * 120.82469 * 180.25890 * 3 2 1 5 5 C 1.38038 * 114.24661 * 180.23215 * 4 3 2 6 6 C 1.47114 * 127.75749 * 179.86694 * 5 4 3 7 7 O 1.21627 * 120.00270 * 38.54689 * 6 5 4 8 8 N 1.34771 * 120.00017 * 218.54310 * 6 5 4 9 9 C 1.47158 * 120.98296 * 356.39874 * 8 6 5 10 10 C 1.53286 * 108.38928 * 129.48123 * 9 8 6 11 11 O 1.42965 * 109.22494 * 52.30193 * 10 9 8 12 12 C 1.42965 * 114.16640 * 297.42377 * 11 10 9 13 13 H 1.09000 * 109.50827 * 302.60353 * 12 11 10 14 14 C 1.52998 * 109.51156 * 182.50199 * 12 11 10 15 15 H 1.09003 * 109.46663 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.47121 * 60.00044 * 14 12 11 17 17 N 1.46496 * 109.47139 * 299.99431 * 14 12 11 18 18 C 1.36929 * 120.00118 * 205.00094 * 17 14 12 19 19 H 1.08003 * 120.00011 * 0.02562 * 18 17 14 20 20 C 1.38817 * 120.00555 * 180.02562 * 18 17 14 21 21 N 1.31621 * 119.99046 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00604 * 180.02562 * 20 18 17 23 23 H 1.48510 * 109.46910 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47205 * 119.99831 * 22 20 18 25 25 H 1.48505 * 109.47024 * 240.00265 * 22 20 18 26 26 C 1.47153 * 120.98662 * 176.41368 * 8 6 5 27 27 S 1.77239 * 104.48132 * 359.59726 * 5 4 3 28 28 N 1.30359 * 120.82379 * 0.02562 * 3 2 1 29 29 H 1.08996 * 109.47481 * 59.99930 * 1 2 3 30 30 H 1.09003 * 109.47398 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47237 * 300.00244 * 1 2 3 32 32 H 1.07993 * 122.87475 * 0.07376 * 4 3 2 33 33 H 1.09003 * 109.67834 * 9.75475 * 9 8 6 34 34 H 1.09001 * 109.68215 * 249.21022 * 9 8 6 35 35 H 1.09001 * 109.51368 * 292.38103 * 10 9 8 36 36 H 1.09005 * 109.55799 * 172.25126 * 10 9 8 37 37 H 1.09000 * 109.47821 * 59.99907 * 16 14 12 38 38 H 1.09003 * 109.47202 * 299.99486 * 16 14 12 39 39 H 1.09000 * 109.47026 * 179.97438 * 16 14 12 40 40 H 0.97005 * 120.00047 * 25.00878 * 17 14 12 41 41 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.67927 * 110.79253 * 26 8 6 43 43 H 1.08998 * 109.67580 * 350.24246 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4189 1.3031 -0.0053 5 6 3.9006 2.5967 0.0005 6 6 5.3050 3.0350 -0.0002 7 8 6.1296 2.4333 -0.6615 8 7 5.6778 4.1033 0.7319 9 6 4.6857 4.8944 1.4773 10 6 5.1759 5.0479 2.9215 11 8 6.5137 5.5522 2.9135 12 6 7.4621 4.6856 2.2862 13 1 7.4506 3.7144 2.7809 14 6 8.8607 5.2966 2.3921 15 1 9.5833 4.6351 1.9140 16 6 9.2297 5.4737 3.8663 17 7 8.8757 6.6007 1.7248 18 6 10.0504 7.1055 1.2345 19 1 10.9658 6.5420 1.3393 20 6 10.0647 8.3414 0.6026 21 7 8.9492 9.0283 0.4753 22 14 11.6670 9.0297 -0.0669 23 1 12.7685 8.0707 0.2024 24 1 11.5412 9.2414 -1.5314 25 1 11.9652 10.3243 0.5967 26 6 7.0889 4.5135 0.8094 27 16 2.4471 3.6109 0.0008 28 7 1.3521 2.3148 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 4.0643 0.4373 -0.0109 33 1 3.7246 4.3802 1.4685 34 1 4.5807 5.8777 1.0188 35 1 5.1556 4.0777 3.4180 36 1 4.5279 5.7434 3.4549 37 1 9.2186 4.5034 4.3628 38 1 8.5072 6.1350 4.3448 39 1 10.2263 5.9086 3.9417 40 1 8.0535 7.1067 1.6304 41 1 8.9592 9.8921 0.0342 42 1 7.2258 5.4584 0.2836 43 1 7.7191 3.7471 0.3583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485633341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:25 Heat of formation + Delta-G solvation = -36.309867 kcal Electronic energy + Delta-G solvation = -27768.965246 eV Core-core repulsion = 23750.089245 eV Total energy + Delta-G solvation = -4018.876002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.67863 -40.23392 -38.50453 -36.75177 -35.59738 -34.65999 -32.40430 -31.73442 -30.27970 -28.65085 -28.43029 -27.77321 -25.30504 -24.07016 -23.57062 -22.65390 -21.23571 -19.82615 -19.41770 -18.73329 -18.02200 -17.33406 -16.83133 -16.53514 -16.46080 -15.92356 -15.61480 -15.12281 -14.94453 -14.67961 -14.29901 -14.24444 -13.82108 -13.71634 -13.40091 -13.27673 -13.04546 -12.53598 -12.39677 -12.09473 -11.93206 -11.77176 -11.50011 -11.37633 -11.24618 -11.08688 -10.86842 -10.80994 -10.57874 -10.43577 -10.19771 -10.02713 -9.96061 -9.90603 -9.60085 -8.94464 -8.65758 -8.53753 -6.93963 -5.74867 -3.03353 -0.13824 0.73091 1.18256 1.91170 2.37428 2.75029 2.93409 3.44666 3.50795 3.52581 3.89972 4.03832 4.45678 4.60119 4.70207 4.75061 4.83174 4.84851 4.90777 5.02408 5.14154 5.19461 5.29630 5.31598 5.42514 5.59514 5.63619 5.70295 5.72878 5.76434 5.95273 6.14802 6.21490 6.37220 6.44252 6.62866 6.63848 6.76011 7.10240 7.11608 7.40117 7.72480 7.80458 8.43377 9.55957 10.12121 10.49300 11.47366 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.002598 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.217711 B =10775.535578 C =11028.810969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.295 6.295 3 C 0.309 3.691 4 C -0.136 4.136 5 C -0.175 4.175 6 C 0.591 3.409 7 O -0.513 6.513 8 N -0.598 5.598 9 C 0.056 3.944 10 C 0.051 3.949 11 O -0.355 6.355 12 C 0.077 3.923 13 H 0.057 0.943 14 C 0.183 3.817 15 H 0.061 0.939 16 C -0.161 4.161 17 N -0.717 5.717 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.929 5.929 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.087 3.913 27 S 0.304 5.696 28 N -0.523 5.523 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.176 0.824 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.107 0.893 37 H 0.033 0.967 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.390 0.610 41 H 0.254 0.746 42 H 0.105 0.895 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.558 -15.727 3.073 23.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.201 6.201 3 C 0.095 3.905 4 C -0.173 4.173 5 C -0.306 4.306 6 C 0.375 3.625 7 O -0.389 6.389 8 N -0.331 5.331 9 C -0.069 4.069 10 C -0.027 4.027 11 O -0.273 6.273 12 C 0.018 3.982 13 H 0.075 0.925 14 C 0.072 3.928 15 H 0.079 0.921 16 C -0.221 4.221 17 N -0.360 5.360 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.034 4.034 27 S 0.454 5.546 28 N -0.364 5.364 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.194 0.806 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.125 0.875 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.225 0.775 41 H 0.064 0.936 42 H 0.123 0.877 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.265 -14.520 2.711 23.490 hybrid contribution 1.048 -0.957 -0.512 1.509 sum -17.217 -15.477 2.199 23.255 Atomic orbital electron populations 1.22993 0.76582 1.03681 1.02638 1.86309 1.23097 1.22578 1.88143 1.19868 0.89692 0.85311 0.95598 1.20700 0.92480 0.98251 1.05875 1.26024 0.99680 0.97874 1.07072 1.16702 0.84759 0.80601 0.80407 1.90872 1.51293 1.55240 1.41482 1.48091 1.09909 1.27735 1.47342 1.22941 0.91789 0.97536 0.94588 1.22855 0.85855 1.00086 0.93892 1.88134 1.15573 1.45126 1.78485 1.22966 0.91257 0.93303 0.90701 0.92481 1.20259 0.89940 0.89627 0.92991 0.92101 1.22351 1.01980 0.99500 0.98246 1.42395 1.09213 1.17128 1.67250 1.19279 0.87774 1.00577 1.29333 0.91135 1.24722 0.96867 0.97514 1.01723 1.69681 1.25132 1.14366 1.48595 0.86160 0.83082 0.78784 0.78400 1.20589 1.21956 1.21986 1.22604 0.78729 1.03476 0.98593 1.85222 0.89022 1.11520 1.68798 1.76405 1.27354 1.01536 1.31080 0.92060 0.87932 0.92048 0.80638 0.89524 0.88810 0.93072 0.87465 0.94840 0.92508 0.92695 0.77508 0.93637 0.87717 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.43 101.05 1.05 1.29 16 2 O -0.30 -2.86 10.51 -19.61 -0.21 -3.07 16 3 C 0.31 3.33 7.36 -18.42 -0.14 3.20 16 4 C -0.14 -1.48 10.25 -39.90 -0.41 -1.89 16 5 C -0.17 -2.08 5.90 -36.06 -0.21 -2.29 16 6 C 0.59 8.58 7.66 -12.66 -0.10 8.48 16 7 O -0.51 -9.06 16.58 5.25 0.09 -8.97 16 8 N -0.60 -8.41 3.02 -173.66 -0.52 -8.93 16 9 C 0.06 0.64 6.10 -3.53 -0.02 0.62 16 10 C 0.05 0.59 6.98 37.31 0.26 0.85 16 11 O -0.36 -5.67 9.22 -35.23 -0.32 -6.00 16 12 C 0.08 1.23 2.53 -26.58 -0.07 1.17 16 13 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 14 C 0.18 3.46 2.73 -67.94 -0.19 3.28 16 15 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 16 C -0.16 -2.86 9.35 37.15 0.35 -2.51 16 17 N -0.72 -17.10 4.28 -53.43 -0.23 -17.33 16 18 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 19 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 22 Si 0.90 22.15 29.55 -169.99 -5.02 17.12 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 C 0.09 1.43 5.85 -3.53 -0.02 1.41 16 27 S 0.30 3.12 20.65 -107.50 -2.22 0.90 16 28 N -0.52 -5.79 11.03 29.19 0.32 -5.46 16 29 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 8.13 -51.92 -0.42 -0.02 16 32 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.09 0.82 3.96 -29.13 -0.12 0.71 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 1.06 7.68 -51.93 -0.40 0.66 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.39 10.04 7.20 -40.82 -0.29 9.75 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.10 2.03 7.26 -51.93 -0.38 1.65 16 43 H 0.10 1.70 7.11 -51.93 -0.37 1.33 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -32.03 368.51 -7.32 -39.35 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.75 Total: 6.93 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 0.27 Total: 6.64 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.29 Total: -58.46 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.44 Total: -18.04 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -2.22 Total: 0.90 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.03 -7.32 -39.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485633341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.040 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds