Wall clock time and date at job start Tue Mar 31 2020 23:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35960 * 117.00161 * 2 1 4 4 C 1.37576 * 120.82469 * 180.25890 * 3 2 1 5 5 C 1.38038 * 114.24661 * 180.23215 * 4 3 2 6 6 C 1.47114 * 127.75749 * 179.86694 * 5 4 3 7 7 O 1.21627 * 120.00270 * 38.54689 * 6 5 4 8 8 N 1.34771 * 120.00017 * 218.54310 * 6 5 4 9 9 C 1.47158 * 120.98296 * 356.39874 * 8 6 5 10 10 C 1.53286 * 108.38928 * 129.48123 * 9 8 6 11 11 O 1.42965 * 109.22494 * 52.30193 * 10 9 8 12 12 C 1.42965 * 114.16640 * 297.42377 * 11 10 9 13 13 H 1.09000 * 109.50827 * 302.60353 * 12 11 10 14 14 C 1.52998 * 109.51156 * 182.50199 * 12 11 10 15 15 H 1.09003 * 109.46663 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.47121 * 60.00044 * 14 12 11 17 17 N 1.46496 * 109.47139 * 299.99431 * 14 12 11 18 18 C 1.36929 * 120.00118 * 205.00094 * 17 14 12 19 19 H 1.08003 * 120.00011 * 0.02562 * 18 17 14 20 20 C 1.38817 * 120.00555 * 180.02562 * 18 17 14 21 21 N 1.31621 * 119.99046 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00604 * 180.02562 * 20 18 17 23 23 H 1.48510 * 109.46910 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47205 * 119.99831 * 22 20 18 25 25 H 1.48505 * 109.47024 * 240.00265 * 22 20 18 26 26 C 1.47153 * 120.98662 * 176.41368 * 8 6 5 27 27 S 1.77239 * 104.48132 * 359.59726 * 5 4 3 28 28 N 1.30359 * 120.82379 * 0.02562 * 3 2 1 29 29 H 1.08996 * 109.47481 * 59.99930 * 1 2 3 30 30 H 1.09003 * 109.47398 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47237 * 300.00244 * 1 2 3 32 32 H 1.07993 * 122.87475 * 0.07376 * 4 3 2 33 33 H 1.09003 * 109.67834 * 9.75475 * 9 8 6 34 34 H 1.09001 * 109.68215 * 249.21022 * 9 8 6 35 35 H 1.09001 * 109.51368 * 292.38103 * 10 9 8 36 36 H 1.09005 * 109.55799 * 172.25126 * 10 9 8 37 37 H 1.09000 * 109.47821 * 59.99907 * 16 14 12 38 38 H 1.09003 * 109.47202 * 299.99486 * 16 14 12 39 39 H 1.09000 * 109.47026 * 179.97438 * 16 14 12 40 40 H 0.97005 * 120.00047 * 25.00878 * 17 14 12 41 41 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.67927 * 110.79253 * 26 8 6 43 43 H 1.08998 * 109.67580 * 350.24246 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4189 1.3031 -0.0053 5 6 3.9006 2.5967 0.0005 6 6 5.3050 3.0350 -0.0002 7 8 6.1296 2.4333 -0.6615 8 7 5.6778 4.1033 0.7319 9 6 4.6857 4.8944 1.4773 10 6 5.1759 5.0479 2.9215 11 8 6.5137 5.5522 2.9135 12 6 7.4621 4.6856 2.2862 13 1 7.4506 3.7144 2.7809 14 6 8.8607 5.2966 2.3921 15 1 9.5833 4.6351 1.9140 16 6 9.2297 5.4737 3.8663 17 7 8.8757 6.6007 1.7248 18 6 10.0504 7.1055 1.2345 19 1 10.9658 6.5420 1.3393 20 6 10.0647 8.3414 0.6026 21 7 8.9492 9.0283 0.4753 22 14 11.6670 9.0297 -0.0669 23 1 12.7685 8.0707 0.2024 24 1 11.5412 9.2414 -1.5314 25 1 11.9652 10.3243 0.5967 26 6 7.0889 4.5135 0.8094 27 16 2.4471 3.6109 0.0008 28 7 1.3521 2.3148 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 4.0643 0.4373 -0.0109 33 1 3.7246 4.3802 1.4685 34 1 4.5807 5.8777 1.0188 35 1 5.1556 4.0777 3.4180 36 1 4.5279 5.7434 3.4549 37 1 9.2186 4.5034 4.3628 38 1 8.5072 6.1350 4.3448 39 1 10.2263 5.9086 3.9417 40 1 8.0535 7.1067 1.6304 41 1 8.9592 9.8921 0.0342 42 1 7.2258 5.4584 0.2836 43 1 7.7191 3.7471 0.3583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485633341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:25 Heat of formation + Delta-G solvation = -60.448411 kcal Electronic energy + Delta-G solvation = -27770.011972 eV Core-core repulsion = 23750.089245 eV Total energy + Delta-G solvation = -4019.922727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.70791 -41.14795 -39.70867 -37.55677 -37.12996 -35.93044 -34.17333 -32.75858 -31.62431 -30.13198 -29.51541 -28.68674 -26.40036 -25.61567 -24.94779 -23.74032 -22.25579 -21.24269 -20.39394 -19.77708 -19.25925 -18.81122 -17.83914 -17.64312 -17.30062 -17.12531 -16.82277 -16.32741 -16.11689 -15.90484 -15.69746 -15.33707 -15.09871 -14.76110 -14.66377 -14.59621 -14.24576 -13.97683 -13.48950 -13.26701 -13.04015 -12.99375 -12.78587 -12.59849 -12.55656 -12.47582 -12.12499 -12.10427 -11.98176 -11.84128 -11.67164 -11.64212 -11.24705 -11.09927 -10.94261 -10.92830 -9.75683 -9.45217 -8.91913 -7.87168 -5.13657 -1.04245 -0.14514 0.35224 1.03255 1.34923 1.49935 1.50645 1.59722 1.68580 2.12239 2.60198 2.77874 3.08049 3.46946 3.59211 3.65875 3.85385 3.92320 3.97853 4.03433 4.08357 4.24861 4.28082 4.30026 4.35432 4.45704 4.52884 4.62683 4.71781 4.72664 4.79702 4.86350 4.95493 4.98421 5.10478 5.14205 5.26845 5.58266 5.64752 5.90469 5.99839 6.25052 6.35531 6.66448 7.42507 8.18580 8.43634 9.36147 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.002598 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.217711 B =10775.535578 C =11028.810969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C 0.307 3.693 4 C -0.126 4.126 5 C -0.193 4.193 6 C 0.593 3.407 7 O -0.552 6.552 8 N -0.597 5.597 9 C 0.055 3.945 10 C 0.047 3.953 11 O -0.379 6.379 12 C 0.091 3.909 13 H 0.083 0.917 14 C 0.173 3.827 15 H 0.063 0.937 16 C -0.149 4.149 17 N -0.726 5.726 18 C -0.230 4.230 19 H 0.076 0.924 20 C -0.075 4.075 21 N -0.966 5.966 22 Si 0.964 3.036 23 H -0.267 1.267 24 H -0.298 1.298 25 H -0.297 1.297 26 C 0.096 3.904 27 S 0.333 5.667 28 N -0.530 5.530 29 H 0.059 0.941 30 H 0.131 0.869 31 H 0.062 0.938 32 H 0.185 0.815 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.133 0.867 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.037 0.963 40 H 0.378 0.622 41 H 0.248 0.752 42 H 0.069 0.931 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.794 -17.393 4.140 25.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.208 6.208 3 C 0.094 3.906 4 C -0.164 4.164 5 C -0.324 4.324 6 C 0.380 3.620 7 O -0.431 6.431 8 N -0.329 5.329 9 C -0.068 4.068 10 C -0.030 4.030 11 O -0.298 6.298 12 C 0.031 3.969 13 H 0.100 0.900 14 C 0.064 3.936 15 H 0.080 0.920 16 C -0.209 4.209 17 N -0.367 5.367 18 C -0.362 4.362 19 H 0.094 0.906 20 C -0.268 4.268 21 N -0.617 5.617 22 Si 0.795 3.205 23 H -0.191 1.191 24 H -0.226 1.226 25 H -0.225 1.225 26 C -0.026 4.026 27 S 0.483 5.517 28 N -0.371 5.371 29 H 0.078 0.922 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.203 0.797 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.151 0.849 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.211 0.789 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.516 -16.225 3.820 25.665 hybrid contribution 1.294 -0.556 -0.812 1.626 sum -18.221 -16.781 3.008 24.953 Atomic orbital electron populations 1.23256 0.74939 1.05637 1.02585 1.86316 1.24723 1.21922 1.87859 1.19881 0.89659 0.85676 0.95432 1.20839 0.92811 0.98229 1.04495 1.25681 0.98805 0.98894 1.09041 1.16956 0.85524 0.80075 0.79470 1.90845 1.52728 1.56483 1.42997 1.48092 1.09406 1.27921 1.47451 1.23109 0.92073 0.97271 0.94358 1.23162 0.84011 1.01776 0.94077 1.88095 1.17407 1.45943 1.78328 1.22689 0.89856 0.93869 0.90439 0.89952 1.20509 0.92290 0.87521 0.93269 0.91961 1.22178 1.00486 1.01044 0.97196 1.42505 1.07809 1.18682 1.67698 1.19643 0.88834 1.00212 1.27552 0.90634 1.25437 0.99597 0.98412 1.03312 1.69826 1.26954 1.14569 1.50376 0.85196 0.80252 0.77956 0.77121 1.19125 1.22558 1.22486 1.22261 0.80328 1.01354 0.98707 1.85101 0.87611 1.10653 1.68301 1.76382 1.27693 1.01904 1.31134 0.92249 0.85083 0.91896 0.79732 0.87290 0.89214 0.91179 0.84893 0.91352 0.93552 0.94344 0.78887 0.94348 0.91276 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.43 113.37 1.18 1.51 16 2 O -0.30 -5.23 10.51 -93.10 -0.98 -6.21 16 3 C 0.31 6.03 7.36 84.75 0.62 6.66 16 4 C -0.13 -2.55 10.25 22.07 0.23 -2.32 16 5 C -0.19 -4.33 5.90 24.55 0.14 -4.19 16 6 C 0.59 16.99 7.66 86.57 0.66 17.65 16 7 O -0.55 -19.69 16.58 -4.12 -0.07 -19.76 16 8 N -0.60 -16.50 3.02 -821.60 -2.48 -18.98 16 9 C 0.06 1.19 6.10 86.35 0.53 1.71 16 10 C 0.05 0.97 6.98 72.08 0.50 1.48 16 11 O -0.38 -11.63 9.22 -148.98 -1.37 -13.00 16 12 C 0.09 2.82 2.53 30.69 0.08 2.90 16 13 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 14 C 0.17 6.48 2.73 44.99 0.12 6.60 16 15 H 0.06 2.31 8.08 -2.39 -0.02 2.29 16 16 C -0.15 -5.10 9.35 71.98 0.67 -4.43 16 17 N -0.73 -35.12 4.28 -322.95 -1.38 -36.50 16 18 C -0.23 -12.44 9.93 84.04 0.83 -11.61 16 19 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 20 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 21 N -0.97 -58.59 13.06 21.65 0.28 -58.31 16 22 Si 0.96 46.23 29.55 68.60 2.03 48.25 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 25 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 26 C 0.10 3.19 5.85 86.35 0.51 3.69 16 27 S 0.33 6.23 20.65 -56.49 -1.17 5.06 16 28 N -0.53 -10.65 11.03 -175.21 -1.93 -12.58 16 29 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 30 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.68 8.13 -2.38 -0.02 0.66 16 32 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.11 1.83 3.96 -16.88 -0.07 1.76 16 34 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.13 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 1.67 7.68 -2.39 -0.02 1.65 16 39 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.38 20.01 7.20 -92.70 -0.67 19.35 16 41 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 42 H 0.07 2.80 7.26 -2.39 -0.02 2.79 16 43 H 0.09 3.17 7.11 -2.39 -0.02 3.16 16 Total: -1.00 -69.98 368.51 -0.20 -70.18 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.32 Total: 26.01 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 6.55 Total: 15.84 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -5.51 Total: -126.38 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -2.42 Total: -38.96 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Atomic # 16 Polarization: 6.23 SS G_CDS: -1.17 Total: 5.06 kcal Total: -69.98 -0.20 -70.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485633341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.730 kcal (2) G-P(sol) polarization free energy of solvation -69.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds