Wall clock time and date at job start Tue Mar 31 2020 23:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35959 * 116.99736 * 2 1 4 4 C 1.37570 * 120.82522 * 180.25489 * 3 2 1 5 5 C 1.38044 * 114.25028 * 180.23455 * 4 3 2 6 6 C 1.47115 * 127.75646 * 179.86753 * 5 4 3 7 7 O 1.21630 * 120.00585 * 38.55749 * 6 5 4 8 8 N 1.34786 * 119.99579 * 218.55422 * 6 5 4 9 9 C 1.47150 * 120.98079 * 356.42000 * 8 6 5 10 10 C 1.53291 * 108.38318 * 129.44335 * 9 8 6 11 11 O 1.42964 * 109.22558 * 52.29964 * 10 9 8 12 12 C 1.42962 * 114.16442 * 297.42158 * 11 10 9 13 13 H 1.09003 * 109.55007 * 302.62768 * 12 11 10 14 14 C 1.53001 * 109.50924 * 182.50484 * 12 11 10 15 15 H 1.09004 * 109.46855 * 185.24692 * 14 12 11 16 16 C 1.52997 * 109.47112 * 305.24775 * 14 12 11 17 17 N 1.46502 * 109.47420 * 65.25237 * 14 12 11 18 18 C 1.36935 * 120.00117 * 154.72127 * 17 14 12 19 19 H 1.08004 * 119.99898 * 0.02562 * 18 17 14 20 20 C 1.38807 * 119.99947 * 179.97438 * 18 17 14 21 21 N 1.31614 * 120.00052 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99931 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47189 * 90.00212 * 22 20 18 24 24 H 1.48501 * 109.47076 * 210.00349 * 22 20 18 25 25 H 1.48501 * 109.47030 * 329.99915 * 22 20 18 26 26 C 1.47154 * 120.97779 * 176.39301 * 8 6 5 27 27 S 1.77231 * 104.47789 * 359.60416 * 5 4 3 28 28 N 1.30359 * 120.82784 * 0.02792 * 3 2 1 29 29 H 1.08994 * 109.47174 * 299.99699 * 1 2 3 30 30 H 1.09000 * 109.47250 * 60.00342 * 1 2 3 31 31 H 1.09008 * 109.46846 * 179.97438 * 1 2 3 32 32 H 1.08004 * 122.87584 * 0.08497 * 4 3 2 33 33 H 1.09004 * 109.67359 * 249.16345 * 9 8 6 34 34 H 1.08992 * 109.68318 * 9.71622 * 9 8 6 35 35 H 1.09005 * 109.51331 * 172.21898 * 10 9 8 36 36 H 1.08996 * 109.51533 * 292.32225 * 10 9 8 37 37 H 1.09001 * 109.47111 * 300.00252 * 16 14 12 38 38 H 1.08995 * 109.46882 * 60.00628 * 16 14 12 39 39 H 1.09000 * 109.46737 * 180.02562 * 16 14 12 40 40 H 0.96996 * 119.99830 * 335.00222 * 17 14 12 41 41 H 0.97010 * 119.99827 * 180.02562 * 21 20 18 42 42 H 1.08997 * 109.67486 * 110.83526 * 26 8 6 43 43 H 1.09000 * 109.71447 * 350.30245 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4188 1.3033 -0.0053 5 6 3.9005 2.5969 0.0006 6 6 5.3049 3.0352 0.0000 7 8 6.1295 2.4337 -0.6614 8 7 5.6777 4.1035 0.7325 9 6 4.6856 4.8940 1.4783 10 6 5.1758 5.0463 2.9227 11 8 6.5136 5.5504 2.9152 12 6 7.4619 4.6842 2.2872 13 1 7.4505 3.7122 2.7804 14 6 8.8606 5.2950 2.3937 15 1 9.5682 4.6821 1.8353 16 6 8.8443 6.7110 1.8145 17 7 9.2647 5.3476 3.8009 18 6 10.5935 5.3513 4.1320 19 1 11.3435 5.3158 3.3557 20 6 10.9763 5.4017 5.4653 21 7 10.0623 5.4455 6.4113 22 14 12.7890 5.4074 5.9170 23 1 13.2787 6.8078 5.9811 24 1 12.9715 4.7581 7.2400 25 1 13.5576 4.6608 4.8889 26 6 7.0888 4.5134 0.8103 27 16 2.4470 3.6110 0.0011 28 7 1.3520 2.3148 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 4.0643 0.4374 -0.0109 33 1 4.5809 5.8777 1.0205 34 1 3.7245 4.3800 1.4690 35 1 4.5277 5.7420 3.4557 36 1 5.1544 4.0760 3.4187 37 1 8.5436 6.6718 0.7675 38 1 8.1368 7.3238 2.3730 39 1 9.8409 7.1459 1.8900 40 1 8.5911 5.3758 4.4982 41 1 10.3299 5.4811 7.3430 42 1 7.2259 5.4587 0.2853 43 1 7.7195 3.7477 0.3585 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485633343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:31 Heat of formation + Delta-G solvation = -35.723598 kcal Electronic energy + Delta-G solvation = -27520.421272 eV Core-core repulsion = 23501.570693 eV Total energy + Delta-G solvation = -4018.850579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.78100 -40.33311 -38.58545 -36.81993 -35.64611 -34.70901 -32.64367 -31.77701 -30.37030 -28.79014 -28.40785 -27.44815 -25.44961 -24.44971 -23.58890 -22.64638 -21.34743 -19.81309 -19.48071 -18.86154 -18.09498 -17.26241 -16.92559 -16.62441 -16.54317 -15.97664 -15.61010 -15.32770 -15.12695 -14.66231 -14.50855 -14.26965 -13.90209 -13.82874 -13.40889 -13.32525 -12.95792 -12.67021 -12.46498 -12.33827 -12.07807 -11.85801 -11.52365 -11.37396 -11.21247 -11.17462 -10.87348 -10.76688 -10.68006 -10.45602 -10.24255 -10.10778 -10.00060 -9.90584 -9.67354 -8.90799 -8.74108 -8.66767 -6.94879 -5.74454 -3.03392 -0.22501 0.64343 1.10067 1.83955 2.22627 2.64027 2.83579 3.44839 3.50085 3.51562 3.87636 3.93241 4.37901 4.53760 4.64089 4.70293 4.73650 4.81618 4.82659 4.97255 5.04436 5.10738 5.22688 5.24256 5.33965 5.56825 5.58601 5.63653 5.66933 5.71858 5.88284 5.95079 6.07347 6.24226 6.42679 6.57613 6.61935 6.79502 6.92137 7.14071 7.39306 7.65010 7.71165 8.43617 9.55676 10.12624 10.49086 11.47892 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022328 B = 0.002352 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.724870 B =11903.681791 C =12074.013331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.294 6.294 3 C 0.310 3.690 4 C -0.132 4.132 5 C -0.178 4.178 6 C 0.594 3.406 7 O -0.511 6.511 8 N -0.599 5.599 9 C 0.057 3.943 10 C 0.049 3.951 11 O -0.355 6.355 12 C 0.074 3.926 13 H 0.066 0.934 14 C 0.185 3.815 15 H 0.061 0.939 16 C -0.163 4.163 17 N -0.719 5.719 18 C -0.239 4.239 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.084 3.916 27 S 0.299 5.701 28 N -0.521 5.521 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.178 0.822 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.056 0.944 37 H 0.035 0.965 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.389 0.611 41 H 0.255 0.745 42 H 0.088 0.912 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.918 -5.604 -14.105 25.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.200 6.200 3 C 0.097 3.903 4 C -0.169 4.169 5 C -0.309 4.309 6 C 0.378 3.622 7 O -0.387 6.387 8 N -0.333 5.333 9 C -0.068 4.068 10 C -0.029 4.029 11 O -0.272 6.272 12 C 0.015 3.985 13 H 0.084 0.916 14 C 0.074 3.926 15 H 0.078 0.922 16 C -0.223 4.223 17 N -0.360 5.360 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.038 4.038 27 S 0.449 5.551 28 N -0.361 5.361 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.195 0.805 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.223 0.777 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.610 -4.457 -14.370 26.331 hybrid contribution 1.209 -1.564 0.469 2.031 sum -20.401 -6.021 -13.901 25.410 Atomic orbital electron populations 1.23009 0.76486 1.03787 1.02641 1.86323 1.23173 1.22465 1.88034 1.19872 0.89698 0.85346 0.95419 1.20739 0.92537 0.98319 1.05305 1.25953 0.99529 0.97934 1.07502 1.16707 0.84838 0.80394 0.80225 1.90875 1.51307 1.54951 1.41600 1.48033 1.09569 1.28170 1.47503 1.22969 0.91977 0.97063 0.94751 1.22876 0.85798 1.00775 0.93482 1.88128 1.15575 1.44774 1.78773 1.23030 0.91061 0.94573 0.89834 0.91589 1.20196 0.89016 0.94435 0.88914 0.92166 1.22424 1.01909 0.99923 0.98056 1.42345 1.05234 1.88319 1.00134 1.19241 0.83646 1.42718 0.91456 0.91134 1.24740 0.97411 1.03001 0.95751 1.69678 1.31465 1.57429 0.99296 0.86206 0.84992 0.77525 0.77555 1.21750 1.21840 1.20760 1.22650 0.79782 1.02351 0.98986 1.85102 0.89067 1.11815 1.69131 1.76423 1.27156 1.01455 1.31085 0.91973 0.92062 0.87852 0.80517 0.89213 0.89317 0.87383 0.92603 0.94639 0.92366 0.92819 0.77661 0.93558 0.89365 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.43 101.05 1.05 1.28 16 2 O -0.29 -2.76 10.51 -19.61 -0.21 -2.96 16 3 C 0.31 3.18 7.36 -18.42 -0.14 3.05 16 4 C -0.13 -1.36 10.25 -39.90 -0.41 -1.77 16 5 C -0.18 -1.92 5.90 -36.05 -0.21 -2.14 16 6 C 0.59 7.72 7.66 -12.65 -0.10 7.62 16 7 O -0.51 -8.19 16.58 5.25 0.09 -8.10 16 8 N -0.60 -7.30 3.02 -173.67 -0.52 -7.82 16 9 C 0.06 0.56 6.10 -3.54 -0.02 0.54 16 10 C 0.05 0.57 6.98 37.31 0.26 0.83 16 11 O -0.35 -5.64 9.24 -35.23 -0.33 -5.97 16 12 C 0.07 1.20 2.61 -26.58 -0.07 1.13 16 13 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.19 3.56 2.77 -67.93 -0.19 3.37 16 15 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 16 C -0.16 -2.87 9.06 37.16 0.34 -2.53 16 17 N -0.72 -17.80 5.10 -53.42 -0.27 -18.07 16 18 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 22 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.08 1.13 5.81 -3.54 -0.02 1.11 16 27 S 0.30 2.69 20.65 -107.50 -2.22 0.47 16 28 N -0.52 -5.38 11.03 29.19 0.32 -5.05 16 29 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 30 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.10 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.18 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.74 3.96 -29.14 -0.12 0.63 16 35 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.03 0.51 6.42 -51.93 -0.33 0.17 16 38 H 0.06 1.08 7.55 -51.93 -0.39 0.69 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.39 10.42 7.59 -40.82 -0.31 10.11 16 41 H 0.25 7.43 8.31 -40.82 -0.34 7.10 16 42 H 0.09 1.11 6.27 -51.93 -0.33 0.78 16 43 H 0.10 1.46 7.11 -51.93 -0.37 1.09 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -33.01 366.70 -7.27 -40.28 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.61 Total: 6.43 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 0.25 Total: 5.31 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.25 Total: -58.27 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.44 Total: -17.03 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -2.22 Total: 0.47 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.01 -7.27 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485633343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.558 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds