Wall clock time and date at job start Tue Mar 31 2020 23:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47385 * 2 1 4 4 C 1.52997 * 109.47454 * 120.00460 * 2 1 3 5 5 N 1.46500 * 109.47423 * 174.99786 * 4 2 1 6 6 C 1.34773 * 119.99939 * 179.97438 * 5 4 2 7 7 O 1.21287 * 120.00205 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00244 * 180.02562 * 6 5 4 9 9 C 1.50698 * 109.47504 * 180.02562 * 8 6 5 10 10 C 1.41382 * 128.00784 * 89.99562 * 9 8 6 11 11 N 1.30172 * 106.39793 * 179.97438 * 10 9 8 12 12 O 1.20928 * 111.60342 * 359.97438 * 11 10 9 13 13 C 1.34044 * 111.56602 * 359.76613 * 12 11 10 14 14 N 1.46506 * 109.47298 * 240.00388 * 2 1 3 15 15 C 1.46492 * 119.99800 * 300.00126 * 14 2 1 16 16 C 1.34773 * 119.99968 * 119.99670 * 14 2 1 17 17 O 1.21283 * 120.00360 * 359.73034 * 16 14 2 18 18 C 1.50706 * 120.00081 * 180.02562 * 16 14 2 19 19 S 1.80996 * 109.47276 * 179.72626 * 18 16 14 20 20 C 1.76195 * 99.99998 * 179.97438 * 19 18 16 21 21 H 1.08007 * 120.00003 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00413 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99814 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00484 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47100 * 89.99929 * 24 22 20 26 26 H 1.48505 * 109.47262 * 210.00143 * 24 22 20 27 27 H 1.48505 * 109.47183 * 330.00192 * 24 22 20 28 28 H 1.09002 * 109.47065 * 299.99505 * 1 2 3 29 29 H 1.09005 * 109.47165 * 59.99636 * 1 2 3 30 30 H 1.08999 * 109.47043 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46828 * 295.00046 * 4 2 1 32 32 H 1.09006 * 109.47092 * 55.00023 * 4 2 1 33 33 H 0.96993 * 119.99749 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.46458 * 300.00159 * 8 6 5 35 35 H 1.08994 * 109.47112 * 59.99498 * 8 6 5 36 36 H 1.07999 * 126.80133 * 359.97438 * 10 9 8 37 37 H 1.07998 * 126.77802 * 180.28837 * 13 12 11 38 38 H 1.09001 * 109.47443 * 269.99328 * 15 14 2 39 39 H 1.08999 * 109.47479 * 30.00306 * 15 14 2 40 40 H 1.09006 * 109.47080 * 149.99714 * 15 14 2 41 41 H 1.09001 * 109.46564 * 299.73030 * 18 16 14 42 42 H 1.08998 * 109.47012 * 59.72084 * 18 16 14 43 43 H 0.97001 * 120.00629 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1731 -1.4284 2.1910 7 8 3.5700 -1.8835 3.1398 8 6 5.6750 -1.5361 2.1309 9 6 6.1774 -2.2467 3.3612 10 6 6.3764 -3.6344 3.5449 11 7 6.8196 -3.7845 4.7596 12 8 6.9193 -2.7236 5.3314 13 6 6.5490 -1.7032 4.5450 14 7 2.0183 -0.6905 -1.1962 15 6 1.6644 -2.0930 -1.4281 16 6 2.7931 -0.0355 -2.0833 17 8 3.0821 1.1271 -1.8939 18 6 3.2951 -0.7456 -3.3142 19 16 4.2940 0.3944 -4.3034 20 6 4.7378 -0.6668 -5.6380 21 1 4.3909 -1.6895 -5.6532 22 6 5.5333 -0.1886 -6.6700 23 7 5.9566 1.0577 -6.6513 24 14 6.0045 -1.3138 -8.0846 25 1 4.9834 -1.2135 -9.1581 26 1 7.3283 -0.9071 -8.6209 27 1 6.0764 -2.7155 -7.5993 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -0.1584 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9824 -0.4622 0.4318 34 1 5.9636 -2.0991 1.2433 35 1 6.1093 -0.5375 2.0848 36 1 6.1963 -4.4152 2.8208 37 1 6.5456 -0.6549 4.8046 38 1 2.4158 -2.7376 -0.9719 39 1 0.6904 -2.3001 -0.9849 40 1 1.6238 -2.2850 -2.5004 41 1 3.9044 -1.5994 -3.0178 42 1 2.4471 -1.0921 -3.9049 43 1 6.5123 1.3921 -7.3727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486965826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:08 Heat of formation + Delta-G solvation = -7.716684 kcal Electronic energy + Delta-G solvation = -26856.591519 eV Core-core repulsion = 22838.955410 eV Total energy + Delta-G solvation = -4017.636108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.13500 -40.32216 -39.43423 -36.65908 -34.85617 -34.33525 -32.50060 -32.46646 -32.11168 -29.41515 -28.80883 -27.00114 -26.22332 -25.55537 -23.21514 -22.25755 -21.72129 -20.51794 -19.23568 -18.17099 -17.82875 -17.81942 -17.12606 -17.05447 -16.53497 -15.84946 -15.50599 -15.37821 -15.05920 -14.86883 -14.34407 -14.03084 -13.81606 -13.51349 -13.32017 -13.25781 -13.19234 -13.08384 -12.68579 -12.43593 -12.40000 -12.26118 -12.08460 -11.90868 -11.46347 -11.17746 -11.12065 -11.08815 -10.81894 -10.60275 -10.18881 -9.88169 -9.62128 -9.53903 -9.28252 -9.13533 -8.73112 -8.32471 -6.59116 -6.28964 -4.00347 1.27750 1.99306 2.40874 2.73900 2.86150 2.95251 3.11941 3.17203 3.21017 3.25152 3.49865 4.04312 4.13250 4.39980 4.43891 4.47764 4.64277 4.78527 4.89162 4.94651 4.98051 5.00575 5.06597 5.13659 5.25973 5.34637 5.37253 5.38237 5.41970 5.44720 5.48661 5.62952 5.77141 5.77435 5.82077 5.92422 6.03018 6.17413 6.50164 7.25593 7.35291 7.52608 7.98598 8.02508 8.27838 8.37236 9.16759 10.78350 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010309 B = 0.002652 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.390476 B =10556.239162 C =12443.350433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.123 3.877 3 H 0.110 0.890 4 C 0.113 3.887 5 N -0.723 5.723 6 C 0.515 3.485 7 O -0.539 6.539 8 C -0.067 4.067 9 C -0.183 4.183 10 C 0.005 3.995 11 N -0.367 5.367 12 O 0.096 5.904 13 C -0.045 4.045 14 N -0.619 5.619 15 C 0.078 3.922 16 C 0.532 3.468 17 O -0.515 6.515 18 C -0.151 4.151 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.407 0.593 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.188 0.812 37 H 0.215 0.785 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.850 -5.493 17.902 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.019 3.981 3 H 0.128 0.872 4 C -0.012 4.012 5 N -0.376 5.376 6 C 0.301 3.699 7 O -0.416 6.416 8 C -0.108 4.108 9 C -0.187 4.187 10 C -0.174 4.174 11 N -0.071 5.071 12 O 0.032 5.968 13 C -0.127 4.127 14 N -0.356 5.356 15 C -0.065 4.065 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.302 4.302 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.242 0.758 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.205 0.795 37 H 0.232 0.768 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.392 -5.023 19.524 20.868 hybrid contribution -0.236 -1.456 -2.344 2.770 sum -5.627 -6.479 17.179 19.203 Atomic orbital electron populations 1.22059 0.93815 1.02660 1.03134 1.21296 0.94890 0.98559 0.83378 0.87224 1.21736 0.80184 1.01338 0.97933 1.45936 1.07829 1.59870 1.23952 1.20482 0.89626 0.77603 0.82185 1.90723 1.70240 1.47406 1.33192 1.19910 0.92232 1.02670 0.95958 1.20716 1.07038 0.93623 0.97320 1.24920 1.01051 0.96741 0.94711 1.73858 1.18949 1.05151 1.09158 1.84807 1.63379 1.10701 1.37950 1.25770 1.00750 0.95941 0.90215 1.47962 1.52179 1.12668 1.22795 1.21760 1.00667 0.81401 1.02709 1.20437 0.77116 0.86779 0.83627 1.90708 1.56465 1.16220 1.75569 1.23570 1.04346 1.04730 0.97509 1.85382 1.61274 1.15061 1.21659 1.22840 1.37601 0.99548 1.08415 0.90958 1.24984 0.95046 0.95541 0.97929 1.70007 1.33309 1.14285 1.32624 0.86179 0.78035 0.80202 0.81159 1.20254 1.20724 1.19676 0.91138 0.91346 0.92001 0.90484 0.91193 0.75801 0.87002 0.87059 0.79457 0.76814 0.92785 0.91153 0.90503 0.89257 0.89199 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.17 37.16 0.34 -0.90 16 2 C 0.12 1.21 2.80 -67.93 -0.19 1.02 16 3 H 0.11 1.29 6.90 -51.93 -0.36 0.94 16 4 C 0.11 1.04 4.97 -4.04 -0.02 1.02 16 5 N -0.72 -7.13 5.39 -60.29 -0.32 -7.45 16 6 C 0.52 5.45 7.82 -10.99 -0.09 5.37 16 7 O -0.54 -7.61 16.03 5.55 0.09 -7.52 16 8 C -0.07 -0.54 6.28 -29.04 -0.18 -0.72 16 9 C -0.18 -1.72 4.82 -104.42 -0.50 -2.23 16 10 C 0.00 0.05 12.16 -17.06 -0.21 -0.16 16 11 N -0.37 -4.44 12.07 30.35 0.37 -4.07 16 12 O 0.10 1.03 11.20 17.16 0.19 1.22 16 13 C -0.04 -0.38 12.26 29.74 0.36 -0.01 16 14 N -0.62 -7.12 2.24 -173.93 -0.39 -7.51 16 15 C 0.08 0.70 9.40 59.84 0.56 1.26 16 16 C 0.53 8.63 7.40 -10.98 -0.08 8.55 16 17 O -0.52 -10.18 15.19 5.56 0.08 -10.09 16 18 C -0.15 -2.75 4.71 36.01 0.17 -2.58 16 19 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 20 C -0.54 -14.53 9.50 30.94 0.29 -14.24 16 21 H 0.07 1.86 7.80 -52.48 -0.41 1.45 16 22 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 23 N -0.87 -25.22 13.22 55.49 0.73 -24.49 16 24 Si 0.92 20.66 29.55 -169.99 -5.02 15.63 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.42 6.66 -51.93 -0.35 0.07 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 33 H 0.41 4.16 7.87 -40.82 -0.32 3.84 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.19 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.22 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 40 H 0.08 0.71 6.43 -51.93 -0.33 0.38 16 41 H 0.09 1.49 8.11 -51.92 -0.42 1.07 16 42 H 0.09 1.54 7.39 -51.92 -0.38 1.16 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 382.30 15.07 5.76 5.76 Total: -1.00 -35.84 382.30 -6.19 -42.03 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.83 Total: 1.91 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 0.37 Total: -1.67 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.38 Total: -43.52 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.37 Total: -16.40 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.84 -6.19 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486965826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.314 kcal (2) G-P(sol) polarization free energy of solvation -35.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds