Wall clock time and date at job start Tue Mar 31 2020 23:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46803 * 2 1 4 4 C 1.47205 * 109.47120 * 240.00274 * 2 1 3 5 5 N 2.60802 * 109.47081 * 240.00145 * 2 1 3 6 6 C 1.50695 * 109.47345 * 120.00203 * 2 1 3 7 7 O 1.21283 * 120.00392 * 120.00065 * 6 2 1 8 8 N 1.34784 * 120.00203 * 299.99699 * 6 2 1 9 9 C 1.46491 * 120.00271 * 175.28713 * 8 6 2 10 10 C 1.53001 * 113.28204 * 53.15210 * 9 8 6 11 11 C 1.53004 * 109.47215 * 67.64232 * 10 9 8 12 12 O 1.42892 * 109.47080 * 185.00056 * 11 10 9 13 13 C 1.53497 * 114.20684 * 186.22122 * 9 8 6 14 14 N 1.47066 * 87.98708 * 87.71732 * 13 9 8 15 15 C 1.34778 * 136.05690 * 207.08133 * 14 13 9 16 16 O 1.21283 * 119.99595 * 0.28339 * 15 14 13 17 17 C 1.50701 * 119.99790 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.46862 * 180.02562 * 17 15 14 19 19 C 1.76194 * 99.99850 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00234 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99883 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00132 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00129 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47070 * 89.99887 * 23 21 19 25 25 H 1.48498 * 109.47416 * 210.00250 * 23 21 19 26 26 H 1.48508 * 109.46798 * 330.00082 * 23 21 19 27 27 C 1.47067 * 87.88594 * 27.34216 * 14 13 9 28 28 H 1.08997 * 109.47196 * 59.99961 * 1 2 3 29 29 H 1.09000 * 109.46803 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46887 * 299.99390 * 1 2 3 31 31 H 0.97002 * 119.99267 * 355.29637 * 8 6 2 32 32 H 1.08998 * 109.47251 * 187.64244 * 10 9 8 33 33 H 1.09004 * 109.47190 * 307.64282 * 10 9 8 34 34 H 1.08998 * 109.47047 * 305.00391 * 11 10 9 35 35 H 1.09002 * 109.46308 * 65.00345 * 11 10 9 36 36 H 0.96705 * 114.00099 * 180.02562 * 12 11 10 37 37 H 1.08999 * 113.46914 * 332.93329 * 13 9 8 38 38 H 1.09006 * 113.51961 * 202.50757 * 13 9 8 39 39 H 1.09000 * 109.46697 * 300.00046 * 17 15 14 40 40 H 1.08995 * 109.47318 * 60.00371 * 17 15 14 41 41 H 0.96992 * 120.00175 * 179.97438 * 22 21 19 42 42 H 1.09002 * 113.46663 * 87.43301 * 27 14 13 43 43 H 1.08997 * 113.47122 * 217.87690 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2020 5 7 2.3993 -1.2294 -2.1295 6 6 2.0324 -0.7104 1.2304 7 8 2.7297 -1.6965 1.1191 8 7 1.7069 -0.2500 2.4546 9 6 2.1078 -0.9976 3.6489 10 6 3.6053 -1.3084 3.6933 11 6 4.3911 -0.0079 3.8726 12 8 5.7912 -0.2832 3.7975 13 6 1.5420 -0.4377 4.9613 14 7 0.3524 -1.2749 4.7452 15 6 -0.9479 -1.2224 5.0956 16 8 -1.3612 -0.2919 5.7548 17 6 -1.8896 -2.3168 4.6635 18 16 -3.5522 -1.9622 5.2847 19 6 -4.4199 -3.3585 4.6509 20 1 -3.8947 -4.1030 4.0710 21 6 -5.7786 -3.5012 4.8959 22 7 -6.4268 -4.5446 4.4228 23 14 -6.6872 -2.2131 5.8983 24 1 -7.2139 -1.1615 4.9919 25 1 -7.8150 -2.8536 6.6216 26 1 -5.7548 -1.6004 6.8785 27 6 1.2075 -2.1981 3.9840 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.2069 0.5764 2.5447 32 1 3.8130 -1.9766 4.5290 33 1 3.9046 -1.7882 2.7614 34 1 4.1161 0.6942 3.0855 35 1 4.1577 0.4264 4.8447 36 1 6.3518 0.4976 3.9034 37 1 1.3333 0.6314 4.9229 38 1 2.1196 -0.7228 5.8407 39 1 -1.9120 -2.3679 3.5750 40 1 -1.5470 -3.2704 5.0651 41 1 -7.3762 -4.6445 4.5944 42 1 1.6975 -2.9479 4.6052 43 1 0.7137 -2.6288 3.1130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001487047129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:51 Heat of formation + Delta-G solvation = -50.003412 kcal Electronic energy + Delta-G solvation = -27346.121148 eV Core-core repulsion = 23326.651349 eV Total energy + Delta-G solvation = -4019.469798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.59778 -39.79653 -38.12589 -37.09097 -36.81478 -34.55770 -33.55388 -32.48934 -31.66077 -30.12008 -27.55153 -26.39574 -25.79049 -25.61663 -23.58562 -22.45382 -20.12881 -19.41914 -18.52059 -17.94262 -17.70680 -17.58879 -16.87405 -16.10591 -16.06930 -15.68312 -15.45301 -15.30165 -14.98938 -14.57993 -14.41221 -14.21846 -13.94140 -13.81829 -13.45846 -13.11919 -13.04932 -12.88610 -12.83263 -12.76632 -12.45627 -12.24070 -12.16924 -12.10320 -11.92732 -11.76775 -11.32080 -11.05895 -10.99267 -10.68321 -10.47224 -10.03586 -9.92597 -9.83161 -9.53423 -9.05793 -8.85724 -8.57923 -6.99298 -6.33523 -4.06545 1.95170 2.05191 2.42815 2.46081 2.76308 2.81220 3.02272 3.28090 3.38306 3.43865 3.45359 3.52923 3.91659 4.10091 4.26472 4.30719 4.35828 4.47851 4.55013 4.69811 4.77738 4.87933 4.92547 5.05012 5.06214 5.06270 5.10360 5.14783 5.20613 5.27804 5.32504 5.53435 5.63269 5.67587 5.69716 5.87601 5.94142 6.04569 6.86531 7.21665 7.23381 7.56481 7.62096 7.89374 8.26147 8.37356 9.12105 10.75716 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012424 B = 0.002932 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.208296 B = 9546.585098 C =11043.972068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.009 4.009 3 H 0.141 0.859 4 C 0.220 3.780 5 N -0.408 5.408 6 C 0.529 3.471 7 O -0.514 6.514 8 N -0.699 5.699 9 C 0.142 3.858 10 C -0.125 4.125 11 C 0.081 3.919 12 O -0.573 6.573 13 C 0.108 3.892 14 N -0.650 5.650 15 C 0.564 3.436 16 O -0.514 6.514 17 C -0.116 4.116 18 S -0.140 6.140 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.879 5.879 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.099 3.901 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.409 0.591 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.379 0.621 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.271 0.729 42 H 0.099 0.901 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.502 13.819 -3.341 25.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 H 0.158 0.842 4 C -0.100 4.100 5 N -0.083 5.083 6 C 0.313 3.687 7 O -0.388 6.388 8 N -0.352 5.352 9 C 0.054 3.946 10 C -0.163 4.163 11 C 0.003 3.997 12 O -0.378 6.378 13 C -0.016 4.016 14 N -0.389 5.389 15 C 0.354 3.646 16 O -0.388 6.388 17 C -0.267 4.267 18 S 0.086 5.914 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.515 5.515 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.025 4.025 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.246 0.754 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.226 0.774 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 21.273 12.954 -3.884 25.208 hybrid contribution -0.425 0.379 0.128 0.584 sum 20.848 13.334 -3.756 25.031 Atomic orbital electron populations 1.21851 0.88946 1.04964 1.04807 1.18822 0.99149 1.00048 0.85365 0.84173 1.28015 0.93877 0.94065 0.94033 1.81214 1.07669 1.07532 1.11893 1.20014 0.80090 0.84764 0.83874 1.90765 1.36039 1.25774 1.86225 1.45386 1.58232 1.27515 1.04020 1.21494 0.93720 0.94153 0.85258 1.21768 0.90173 0.98001 1.06396 1.22067 0.81259 0.96921 0.99430 1.86495 1.16965 1.37998 1.96325 1.23222 0.84754 0.97916 0.95731 1.49593 1.05958 1.26920 1.56382 1.19900 0.79487 0.86996 0.78233 1.90726 1.75051 1.35052 1.37936 1.23215 0.99014 0.99558 1.04877 1.84764 0.99389 1.35471 1.71757 1.22290 0.96856 1.08205 1.39613 0.89375 1.24716 0.96431 0.95409 0.94719 1.69935 1.09885 1.27903 1.43814 0.86738 0.81117 0.82029 0.81974 1.19180 1.19897 1.15928 1.23465 0.89445 0.93522 0.96095 0.89973 0.90611 0.89604 0.75431 0.89628 0.87273 0.93833 0.93597 0.77409 0.89699 0.88162 0.88600 0.88524 0.91871 0.88286 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.05 37.16 0.34 -0.36 16 2 C -0.01 -0.05 3.10 -94.56 -0.29 -0.34 16 3 H 0.14 0.18 8.14 -51.93 -0.42 -0.24 16 4 C 0.22 2.13 13.88 -20.76 -0.29 1.84 16 5 N -0.41 -5.31 18.54 42.15 0.78 -4.53 16 6 C 0.53 3.96 6.95 -10.98 -0.08 3.88 16 7 O -0.51 -5.98 13.71 5.56 0.08 -5.90 16 8 N -0.70 -3.97 4.92 -47.30 -0.23 -4.20 16 9 C 0.14 0.97 0.77 -131.57 -0.10 0.87 16 10 C -0.12 -0.90 4.92 -26.73 -0.13 -1.03 16 11 C 0.08 0.48 6.82 37.16 0.25 0.73 16 12 O -0.57 -4.25 13.66 -35.23 -0.48 -4.73 16 13 C 0.11 0.80 7.33 -8.50 -0.06 0.74 16 14 N -0.65 -7.35 3.69 -185.00 -0.68 -8.03 16 15 C 0.56 9.28 8.10 -10.98 -0.09 9.19 16 16 O -0.51 -10.28 16.64 5.56 0.09 -10.19 16 17 C -0.12 -2.16 5.98 36.01 0.22 -1.94 16 18 S -0.14 -3.42 18.55 -107.50 -1.99 -5.41 16 19 C -0.52 -14.69 10.04 30.94 0.31 -14.38 16 20 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 21 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 22 N -0.88 -26.16 13.97 55.49 0.78 -25.38 16 23 Si 0.86 21.23 27.74 -169.99 -4.71 16.52 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 27 C 0.10 0.89 7.83 -8.36 -0.07 0.82 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.29 7.68 -51.93 -0.40 -0.10 16 31 H 0.41 1.42 8.24 -40.82 -0.34 1.08 16 32 H 0.09 0.58 8.00 -51.93 -0.42 0.16 16 33 H 0.11 1.11 5.71 -51.93 -0.30 0.81 16 34 H 0.04 0.23 7.90 -51.93 -0.41 -0.18 16 35 H 0.05 0.20 7.81 -51.93 -0.41 -0.20 16 36 H 0.38 1.10 9.12 45.56 0.42 1.52 16 37 H 0.08 0.57 8.13 -51.93 -0.42 0.14 16 38 H 0.10 0.62 8.11 -51.93 -0.42 0.20 16 39 H 0.10 1.67 8.14 -51.92 -0.42 1.24 16 40 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.10 0.76 8.00 -51.93 -0.42 0.34 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -39.34 386.52 -5.86 -45.21 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -5.22 Total: -1.87 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -0.09 Total: 2.69 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.64 Total: -42.13 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.31 Total: -20.82 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.71 Total: 16.52 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -1.99 Total: -5.41 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.34 -5.86 -45.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487047129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.797 kcal (2) G-P(sol) polarization free energy of solvation -39.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds