Wall clock time and date at job start Tue Mar 31 2020 23:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46803 * 2 1 4 4 C 1.47205 * 109.47120 * 240.00274 * 2 1 3 5 5 N 2.60802 * 109.47081 * 240.00145 * 2 1 3 6 6 C 1.50695 * 109.47345 * 120.00203 * 2 1 3 7 7 O 1.21283 * 120.00392 * 120.00065 * 6 2 1 8 8 N 1.34784 * 120.00203 * 299.99699 * 6 2 1 9 9 C 1.46491 * 120.00271 * 175.28713 * 8 6 2 10 10 C 1.53001 * 113.28204 * 53.15210 * 9 8 6 11 11 C 1.53004 * 109.47215 * 67.64232 * 10 9 8 12 12 O 1.42892 * 109.47080 * 185.00056 * 11 10 9 13 13 C 1.53497 * 114.20684 * 186.22122 * 9 8 6 14 14 N 1.47066 * 87.98708 * 87.71732 * 13 9 8 15 15 C 1.34778 * 136.05690 * 207.08133 * 14 13 9 16 16 O 1.21283 * 119.99595 * 0.28339 * 15 14 13 17 17 C 1.50701 * 119.99790 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.46862 * 180.02562 * 17 15 14 19 19 C 1.76194 * 99.99850 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00234 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99883 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00132 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00129 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47070 * 89.99887 * 23 21 19 25 25 H 1.48498 * 109.47416 * 210.00250 * 23 21 19 26 26 H 1.48508 * 109.46798 * 330.00082 * 23 21 19 27 27 C 1.47067 * 87.88594 * 27.34216 * 14 13 9 28 28 H 1.08997 * 109.47196 * 59.99961 * 1 2 3 29 29 H 1.09000 * 109.46803 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46887 * 299.99390 * 1 2 3 31 31 H 0.97002 * 119.99267 * 355.29637 * 8 6 2 32 32 H 1.08998 * 109.47251 * 187.64244 * 10 9 8 33 33 H 1.09004 * 109.47190 * 307.64282 * 10 9 8 34 34 H 1.08998 * 109.47047 * 305.00391 * 11 10 9 35 35 H 1.09002 * 109.46308 * 65.00345 * 11 10 9 36 36 H 0.96705 * 114.00099 * 180.02562 * 12 11 10 37 37 H 1.08999 * 113.46914 * 332.93329 * 13 9 8 38 38 H 1.09006 * 113.51961 * 202.50757 * 13 9 8 39 39 H 1.09000 * 109.46697 * 300.00046 * 17 15 14 40 40 H 1.08995 * 109.47318 * 60.00371 * 17 15 14 41 41 H 0.96992 * 120.00175 * 179.97438 * 22 21 19 42 42 H 1.09002 * 113.46663 * 87.43301 * 27 14 13 43 43 H 1.08997 * 113.47122 * 217.87690 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2020 5 7 2.3993 -1.2294 -2.1295 6 6 2.0324 -0.7104 1.2304 7 8 2.7297 -1.6965 1.1191 8 7 1.7069 -0.2500 2.4546 9 6 2.1078 -0.9976 3.6489 10 6 3.6053 -1.3084 3.6933 11 6 4.3911 -0.0079 3.8726 12 8 5.7912 -0.2832 3.7975 13 6 1.5420 -0.4377 4.9613 14 7 0.3524 -1.2749 4.7452 15 6 -0.9479 -1.2224 5.0956 16 8 -1.3612 -0.2919 5.7548 17 6 -1.8896 -2.3168 4.6635 18 16 -3.5522 -1.9622 5.2847 19 6 -4.4199 -3.3585 4.6509 20 1 -3.8947 -4.1030 4.0710 21 6 -5.7786 -3.5012 4.8959 22 7 -6.4268 -4.5446 4.4228 23 14 -6.6872 -2.2131 5.8983 24 1 -7.2139 -1.1615 4.9919 25 1 -7.8150 -2.8536 6.6216 26 1 -5.7548 -1.6004 6.8785 27 6 1.2075 -2.1981 3.9840 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.2069 0.5764 2.5447 32 1 3.8130 -1.9766 4.5290 33 1 3.9046 -1.7882 2.7614 34 1 4.1161 0.6942 3.0855 35 1 4.1577 0.4264 4.8447 36 1 6.3518 0.4976 3.9034 37 1 1.3333 0.6314 4.9229 38 1 2.1196 -0.7228 5.8407 39 1 -1.9120 -2.3679 3.5750 40 1 -1.5470 -3.2704 5.0651 41 1 -7.3762 -4.6445 4.5944 42 1 1.6975 -2.9479 4.6052 43 1 0.7137 -2.6288 3.1130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001487047129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:50 Heat of formation + Delta-G solvation = -82.891986 kcal Electronic energy + Delta-G solvation = -27347.547303 eV Core-core repulsion = 23326.651349 eV Total energy + Delta-G solvation = -4020.895954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.32447 -40.63169 -39.19721 -37.66579 -37.59848 -35.24287 -34.67934 -34.22237 -32.33554 -31.33567 -28.49314 -27.85233 -27.09753 -26.26330 -24.22785 -23.06841 -20.99343 -20.39026 -19.57553 -19.16300 -18.44269 -18.16849 -17.93239 -17.16696 -16.95588 -16.78758 -16.67417 -16.25409 -15.98577 -15.70623 -15.27689 -15.08589 -14.92862 -14.87121 -14.74000 -14.15756 -14.06961 -13.77197 -13.63242 -13.48416 -13.36066 -13.33853 -13.12201 -13.00390 -12.81103 -12.79115 -12.60570 -12.44356 -12.30937 -11.86635 -11.60482 -11.17005 -11.10572 -10.92575 -10.59726 -10.55688 -10.31201 -9.79800 -9.00401 -8.51687 -6.23252 0.94089 1.32425 1.32826 1.40813 1.44209 1.50313 1.54037 1.71609 1.93010 2.15425 2.25027 2.64934 2.78120 2.86653 2.87765 3.34917 3.49284 3.60109 3.79398 3.92075 4.12137 4.14871 4.22754 4.30908 4.36749 4.42777 4.47557 4.53105 4.56573 4.62629 4.73545 4.77595 4.77847 4.82263 5.04807 5.26418 5.30514 5.44975 5.69878 6.10905 6.33808 6.48637 6.53002 6.92904 6.98381 7.03650 7.08569 8.60987 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012424 B = 0.002932 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.208296 B = 9546.585098 C =11043.972068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.001 4.001 3 H 0.193 0.807 4 C 0.241 3.759 5 N -0.476 5.476 6 C 0.530 3.470 7 O -0.559 6.559 8 N -0.686 5.686 9 C 0.158 3.842 10 C -0.120 4.120 11 C 0.080 3.920 12 O -0.599 6.599 13 C 0.112 3.888 14 N -0.643 5.643 15 C 0.571 3.429 16 O -0.554 6.554 17 C -0.106 4.106 18 S -0.162 6.162 19 C -0.531 4.531 20 H 0.057 0.943 21 C 0.044 3.956 22 N -0.919 5.919 23 Si 0.917 3.083 24 H -0.259 1.259 25 H -0.261 1.261 26 H -0.234 1.234 27 C 0.089 3.911 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.106 0.894 31 H 0.424 0.576 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.397 0.603 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.277 0.723 42 H 0.116 0.884 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.637 16.631 -2.139 28.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 H 0.210 0.790 4 C -0.077 4.077 5 N -0.152 5.152 6 C 0.315 3.685 7 O -0.436 6.436 8 N -0.340 5.340 9 C 0.069 3.931 10 C -0.159 4.159 11 C 0.003 3.997 12 O -0.407 6.407 13 C -0.010 4.010 14 N -0.379 5.379 15 C 0.359 3.641 16 O -0.432 6.432 17 C -0.256 4.256 18 S 0.065 5.935 19 C -0.679 4.679 20 H 0.075 0.925 21 C -0.161 4.161 22 N -0.557 5.557 23 Si 0.738 3.262 24 H -0.183 1.183 25 H -0.186 1.186 26 H -0.157 1.157 27 C -0.035 4.035 28 H 0.114 0.886 29 H 0.068 0.932 30 H 0.124 0.876 31 H 0.264 0.736 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.247 0.753 37 H 0.121 0.879 38 H 0.141 0.859 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.086 0.914 42 H 0.134 0.866 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 22.455 15.793 -2.693 27.584 hybrid contribution -0.578 -0.563 -0.306 0.863 sum 21.877 15.229 -2.999 26.824 Atomic orbital electron populations 1.21886 0.88152 1.03843 1.06515 1.19131 0.99393 1.01690 0.82287 0.78988 1.28844 0.92171 0.92672 0.94025 1.81223 1.09959 1.09686 1.14285 1.20335 0.79268 0.84130 0.84752 1.90775 1.38175 1.27811 1.86861 1.45295 1.57721 1.27757 1.03203 1.21258 0.93321 0.92975 0.85499 1.21672 0.90143 0.98959 1.05096 1.22123 0.80559 0.96040 1.00976 1.86443 1.17954 1.39861 1.96492 1.23529 0.82426 0.98511 0.96547 1.49414 1.05220 1.28275 1.54996 1.19246 0.80870 0.85749 0.78196 1.90710 1.76217 1.36202 1.40036 1.23177 0.96078 1.01094 1.05292 1.84571 1.03161 1.33592 1.72204 1.22458 0.97426 1.08943 1.39073 0.92467 1.25619 0.97344 0.97371 0.95780 1.70026 1.10572 1.29769 1.45337 0.85834 0.80049 0.79622 0.80667 1.18341 1.18580 1.15728 1.23785 0.89256 0.94609 0.95816 0.88618 0.93152 0.87578 0.73639 0.89148 0.90154 0.92923 0.91363 0.75315 0.87905 0.85943 0.87633 0.88015 0.91355 0.86602 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.05 71.98 0.65 -0.37 16 2 C 0.00 -0.01 3.10 -13.35 -0.04 -0.05 16 3 H 0.19 -0.42 8.14 -2.39 -0.02 -0.44 16 4 C 0.24 4.51 13.88 89.44 1.24 5.75 16 5 N -0.48 -12.64 18.54 20.01 0.37 -12.27 16 6 C 0.53 6.88 6.95 87.65 0.61 7.49 16 7 O -0.56 -12.71 13.71 -3.04 -0.04 -12.75 16 8 N -0.69 -5.69 4.92 -421.95 -2.08 -7.77 16 9 C 0.16 1.71 0.77 4.17 0.00 1.72 16 10 C -0.12 -1.46 4.92 30.60 0.15 -1.30 16 11 C 0.08 0.70 6.82 71.98 0.49 1.19 16 12 O -0.60 -7.55 13.66 -148.98 -2.03 -9.58 16 13 C 0.11 1.23 7.33 83.18 0.61 1.84 16 14 N -0.64 -12.83 3.69 -857.62 -3.16 -15.99 16 15 C 0.57 17.76 8.10 87.66 0.71 18.47 16 16 O -0.55 -21.23 16.64 -3.04 -0.05 -21.28 16 17 C -0.11 -3.85 5.98 71.24 0.43 -3.42 16 18 S -0.16 -7.85 18.55 -56.49 -1.05 -8.90 16 19 C -0.53 -30.45 10.04 67.96 0.68 -29.77 16 20 H 0.06 3.51 8.03 -2.91 -0.02 3.48 16 21 C 0.04 2.55 5.50 84.86 0.47 3.02 16 22 N -0.92 -55.61 13.97 21.65 0.30 -55.31 16 23 Si 0.92 43.76 27.74 68.60 1.90 45.66 16 24 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 26 H -0.23 -11.01 6.74 99.48 0.67 -10.34 16 27 C 0.09 1.40 7.83 83.27 0.65 2.06 16 28 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.11 0.35 7.68 -2.39 -0.02 0.33 16 31 H 0.42 1.14 8.24 -92.71 -0.76 0.38 16 32 H 0.09 1.00 8.00 -2.39 -0.02 0.98 16 33 H 0.08 1.56 5.71 -2.39 -0.01 1.55 16 34 H 0.05 0.35 7.90 -2.39 -0.02 0.34 16 35 H 0.07 0.30 7.81 -2.39 -0.02 0.28 16 36 H 0.40 1.36 9.12 -74.05 -0.68 0.69 16 37 H 0.10 0.87 8.13 -2.39 -0.02 0.85 16 38 H 0.12 0.95 8.11 -2.38 -0.02 0.93 16 39 H 0.11 3.61 8.14 -2.40 -0.02 3.60 16 40 H 0.10 3.59 8.14 -2.40 -0.02 3.57 16 41 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.12 1.50 8.00 -2.39 -0.02 1.48 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -89.47 386.52 0.40 -89.07 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -0.41 Total: 2.51 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 6.65 Total: 6.61 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -4.57 Total: -91.34 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -2.13 Total: -43.61 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.90 Total: 45.66 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.05 Total: -8.90 kcal Total: -89.47 0.40 -89.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487047129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.174 kcal (2) G-P(sol) polarization free energy of solvation -89.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds