Wall clock time and date at job start Tue Mar 31 2020 23:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35535 * 125.67571 * 2 1 4 4 C 1.35451 * 108.87001 * 179.97438 * 3 2 1 5 5 C 1.39832 * 107.86499 * 0.02562 * 4 3 2 6 6 C 1.37650 * 125.67701 * 179.97438 * 2 1 3 7 7 C 1.46671 * 126.23495 * 0.05016 * 6 2 1 8 8 O 1.21697 * 119.99958 * 354.25885 * 7 6 2 9 9 N 1.34774 * 120.00275 * 174.25354 * 7 6 2 10 10 C 1.46497 * 120.00310 * 185.12061 * 9 7 6 11 11 C 1.53003 * 109.47218 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.46817 * 65.00118 * 11 10 9 13 13 C 1.52999 * 109.47070 * 185.00078 * 11 10 9 14 14 O 1.42894 * 109.47371 * 55.00062 * 13 11 10 15 15 N 1.46502 * 109.47231 * 305.00140 * 11 10 9 16 16 C 1.34773 * 120.00152 * 154.99719 * 15 11 10 17 17 O 1.21284 * 119.99791 * 359.97438 * 16 15 11 18 18 C 1.50696 * 120.00009 * 179.97438 * 16 15 11 19 19 S 1.81001 * 109.47182 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00152 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99719 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00112 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00004 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99846 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46971 * 90.00393 * 24 22 20 26 26 H 1.48498 * 109.46866 * 210.00320 * 24 22 20 27 27 H 1.48501 * 109.47013 * 330.00176 * 24 22 20 28 28 H 1.08995 * 109.47635 * 273.94452 * 1 2 3 29 29 H 1.09006 * 109.47051 * 33.94201 * 1 2 3 30 30 H 1.08996 * 109.47105 * 153.94176 * 1 2 3 31 31 H 1.08004 * 125.56543 * 359.93872 * 3 2 1 32 32 H 1.08000 * 126.06724 * 179.97438 * 4 3 2 33 33 H 1.08003 * 126.46101 * 180.25647 * 5 4 3 34 34 H 0.96999 * 119.99830 * 5.12946 * 9 7 6 35 35 H 1.09004 * 109.46983 * 300.00265 * 10 9 7 36 36 H 1.09001 * 109.47012 * 60.00353 * 10 9 7 37 37 H 1.09004 * 109.47148 * 174.99945 * 13 11 10 38 38 H 1.09003 * 109.46916 * 294.99914 * 13 11 10 39 39 H 0.96704 * 114.00538 * 179.97438 * 14 13 11 40 40 H 0.96997 * 119.99705 * 334.99980 * 15 11 10 41 41 H 1.08994 * 109.47572 * 300.00283 * 18 16 15 42 42 H 1.08998 * 109.46973 * 60.00544 * 18 16 15 43 43 H 0.96996 * 120.00388 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7094 0.0006 5 6 3.5780 -0.6887 0.0004 6 6 2.2678 -1.1182 0.0005 7 6 1.8124 -2.5124 0.0001 8 8 0.6266 -2.7652 0.1047 9 7 2.7072 -3.5136 -0.1162 10 6 2.2454 -4.8992 -0.2295 11 6 3.4530 -5.8312 -0.3476 12 1 4.0318 -5.7947 0.5753 13 6 2.9706 -7.2627 -0.5909 14 8 2.1163 -7.2893 -1.7359 15 7 4.2934 -5.4020 -1.4683 16 6 5.6066 -5.7049 -1.4805 17 8 6.0928 -6.3323 -0.5634 18 6 6.4709 -5.2639 -2.6335 19 16 8.1717 -5.8191 -2.3595 20 6 8.9385 -5.1855 -3.8138 21 1 8.3527 -4.6411 -4.5397 22 6 10.2952 -5.3870 -4.0272 23 7 10.8678 -4.9141 -5.1139 24 14 11.3082 -6.3293 -2.7721 25 1 11.2936 -7.7754 -3.1093 26 1 12.7069 -5.8308 -2.7901 27 1 10.7293 -6.1306 -1.4190 28 1 -0.3634 0.0707 1.0251 29 1 -0.3633 0.8526 -0.5738 30 1 -0.3633 -0.9232 -0.4514 31 1 1.9081 2.1237 -0.0009 32 1 4.4132 1.3612 0.0003 33 1 4.4583 -1.3144 0.0046 34 1 3.6569 -3.3166 -0.1247 35 1 1.6682 -5.1635 0.6566 36 1 1.6187 -5.0020 -1.1154 37 1 3.8296 -7.9112 -0.7633 38 1 2.4198 -7.6136 0.2818 39 1 1.7727 -8.1675 -1.9501 40 1 3.9047 -4.8999 -2.2015 41 1 6.0920 -5.6981 -3.5586 42 1 6.4508 -4.1766 -2.7076 43 1 11.8159 -5.0546 -5.2629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001487943560.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:45 Heat of formation + Delta-G solvation = -71.608157 kcal Electronic energy + Delta-G solvation = -26796.445763 eV Core-core repulsion = 22776.039113 eV Total energy + Delta-G solvation = -4020.406650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60596 -39.98877 -39.04186 -37.34747 -35.59221 -33.91341 -32.95105 -32.45054 -31.15949 -29.65629 -28.41637 -26.74785 -26.04750 -25.62348 -22.73175 -21.83138 -20.74380 -20.46446 -19.82146 -18.33639 -17.88336 -17.68331 -16.68390 -16.44062 -16.26130 -15.90845 -15.36943 -15.24654 -14.98580 -14.89641 -14.46453 -14.18017 -13.94892 -13.78939 -13.64999 -13.49189 -13.35252 -12.85472 -12.78405 -12.60830 -12.56126 -12.46658 -12.25171 -11.89605 -11.57777 -11.28210 -11.02539 -10.63136 -10.33157 -10.22089 -9.87373 -9.61288 -9.39850 -9.13309 -9.01064 -8.98746 -8.52604 -8.46729 -6.93748 -6.29930 -4.01984 1.22195 2.33411 2.51132 2.69970 2.85779 3.07351 3.16766 3.26910 3.32151 3.48497 3.61354 4.01754 4.31428 4.34302 4.50643 4.54912 4.71069 4.73440 4.83752 4.91773 5.04662 5.09116 5.11931 5.15610 5.17987 5.22723 5.32351 5.44069 5.47490 5.73426 5.75767 5.84477 5.95815 6.00265 6.08008 6.41843 6.49717 6.72909 6.93393 7.20722 7.37015 7.52591 7.91594 7.93146 8.38844 8.41323 9.16069 10.79375 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010956 B = 0.002778 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.016012 B =10075.625254 C =12058.621656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.412 5.412 3 C 0.014 3.986 4 C -0.205 4.205 5 C -0.136 4.136 6 C -0.058 4.058 7 C 0.592 3.408 8 O -0.552 6.552 9 N -0.718 5.718 10 C 0.120 3.880 11 C 0.139 3.861 12 H 0.108 0.892 13 C 0.066 3.934 14 O -0.569 6.569 15 N -0.727 5.727 16 C 0.533 3.467 17 O -0.520 6.520 18 C -0.125 4.125 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.268 1.268 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.169 0.831 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.407 0.593 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.381 0.619 40 H 0.404 0.596 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.349 6.500 10.900 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.085 5.085 3 C -0.122 4.122 4 C -0.229 4.229 5 C -0.162 4.162 6 C -0.171 4.171 7 C 0.381 3.619 8 O -0.432 6.432 9 N -0.370 5.370 10 C -0.004 4.004 11 C 0.033 3.967 12 H 0.126 0.874 13 C -0.014 4.014 14 O -0.374 6.374 15 N -0.382 5.382 16 C 0.319 3.681 17 O -0.395 6.395 18 C -0.275 4.275 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.122 0.878 31 H 0.186 0.814 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.243 0.757 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.228 0.772 40 H 0.239 0.761 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.490 5.884 12.383 26.339 hybrid contribution 0.274 0.169 -1.137 1.182 sum -22.216 6.053 11.245 25.625 Atomic orbital electron populations 1.22275 0.76192 1.05423 1.03671 1.43836 1.06760 1.04958 1.52955 1.22050 0.90748 0.91492 1.07876 1.20884 0.96105 0.95100 1.10807 1.21443 0.94459 0.95737 1.04602 1.19983 0.90528 0.87477 1.19110 1.16943 0.85408 0.83556 0.76017 1.90773 1.16415 1.84944 1.51105 1.45620 1.10310 1.06186 1.74879 1.21595 0.95931 0.79087 1.03811 1.21261 0.91022 0.92417 0.91957 0.87437 1.22547 0.93848 0.96583 0.88386 1.86443 1.67296 1.35335 1.48374 1.45995 1.08485 1.59280 1.24450 1.20341 0.81503 0.78674 0.87554 1.90703 1.73067 1.38754 1.36932 1.23279 1.00114 1.05022 0.99105 1.84756 0.99192 1.74889 1.32628 1.22312 0.97424 1.41444 1.05702 0.89366 1.24717 0.96798 0.94556 0.95253 1.69934 1.12140 1.44135 1.25453 0.86735 0.80393 0.80866 0.83838 1.19262 1.19953 1.15915 0.90664 0.90057 0.87813 0.81393 0.83772 0.83694 0.75728 0.89967 0.89420 0.91994 0.92577 0.77215 0.76122 0.88433 0.88349 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 10.64 59.85 0.64 1.13 16 2 N -0.41 -4.07 3.16 -120.24 -0.38 -4.45 16 3 C 0.01 0.12 11.38 -16.91 -0.19 -0.08 16 4 C -0.21 -1.94 10.81 -39.98 -0.43 -2.37 16 5 C -0.14 -1.42 10.35 -39.12 -0.41 -1.82 16 6 C -0.06 -0.65 6.88 -81.98 -0.56 -1.22 16 7 C 0.59 7.03 7.77 -12.86 -0.10 6.93 16 8 O -0.55 -7.75 14.67 5.19 0.08 -7.68 16 9 N -0.72 -7.10 5.37 -61.62 -0.33 -7.43 16 10 C 0.12 1.12 5.12 -4.04 -0.02 1.10 16 11 C 0.14 1.40 2.53 -67.93 -0.17 1.22 16 12 H 0.11 1.15 7.58 -51.93 -0.39 0.76 16 13 C 0.07 0.61 6.85 37.16 0.25 0.86 16 14 O -0.57 -5.11 12.64 -35.23 -0.45 -5.56 16 15 N -0.73 -8.46 4.46 -53.80 -0.24 -8.70 16 16 C 0.53 8.62 7.81 -10.99 -0.09 8.53 16 17 O -0.52 -10.14 15.52 5.55 0.09 -10.05 16 18 C -0.12 -2.30 6.16 36.00 0.22 -2.07 16 19 S -0.14 -3.46 18.55 -107.50 -1.99 -5.45 16 20 C -0.52 -14.77 10.04 30.94 0.31 -14.46 16 21 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 22 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 23 N -0.88 -26.36 13.97 55.49 0.78 -25.58 16 24 Si 0.86 21.48 27.74 -169.99 -4.72 16.76 16 25 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 27 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.96 6.23 -51.93 -0.32 0.63 16 31 H 0.17 0.87 8.06 -52.48 -0.42 0.44 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.15 1.32 7.45 -52.48 -0.39 0.93 16 34 H 0.41 3.74 7.04 -40.82 -0.29 3.45 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.92 7.40 -51.93 -0.38 0.53 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.38 1.96 9.12 45.56 0.42 2.37 16 40 H 0.40 4.17 8.60 -40.82 -0.35 3.82 16 41 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 42 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -36.53 381.74 -7.16 -43.69 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.10 Total: 8.26 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -0.64 Total: 0.44 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.18 Total: -46.16 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.28 Total: -23.29 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.72 Total: 16.76 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.45 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.53 -7.16 -43.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487943560.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.922 kcal (2) G-P(sol) polarization free energy of solvation -36.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds