Wall clock time and date at job start Tue Mar 31 2020 23:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 C 1.52996 * 109.47530 * 239.99206 * 2 1 3 5 5 N 1.46498 * 109.47059 * 184.99929 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 O 1.42900 * 109.47361 * 180.02562 * 8 6 5 10 10 C 1.36225 * 116.99890 * 180.02562 * 9 8 6 11 11 C 1.38669 * 122.58686 * 180.02562 * 10 9 8 12 12 C 1.33435 * 114.88521 * 179.97438 * 11 10 9 13 13 S 1.75864 * 109.65986 * 0.02562 * 12 11 10 14 14 C 1.33630 * 122.58880 * 359.70719 * 10 9 8 15 15 N 1.46906 * 109.46590 * 119.99337 * 2 1 3 16 16 C 1.46903 * 110.99854 * 275.00026 * 15 2 1 17 17 C 1.50706 * 109.46788 * 180.02562 * 16 15 2 18 18 O 1.21289 * 119.99769 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99565 * 180.02562 * 17 16 15 20 20 C 1.37093 * 119.99800 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00230 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00440 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99595 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00614 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47054 * 59.99527 * 24 22 20 26 26 H 1.48498 * 109.47226 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46844 * 299.99834 * 24 22 20 28 28 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47478 * 300.00790 * 1 2 3 30 30 H 1.09000 * 109.46800 * 60.01246 * 1 2 3 31 31 H 1.09004 * 109.47066 * 65.00196 * 4 2 1 32 32 H 1.08994 * 109.46974 * 305.00344 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 35 35 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 36 36 H 1.07997 * 122.55462 * 0.02562 * 11 10 9 37 37 H 1.08002 * 125.16836 * 180.02562 * 12 11 10 38 38 H 1.08005 * 125.19262 * 359.97438 * 14 10 9 39 39 H 1.00901 * 110.99482 * 151.05012 * 15 2 1 40 40 H 1.09001 * 109.47321 * 299.99877 * 16 15 2 41 41 H 1.08999 * 109.46905 * 60.00434 * 16 15 2 42 42 H 0.96997 * 120.00270 * 359.97438 * 19 17 16 43 43 H 0.97007 * 120.00346 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5001 -0.8264 -1.1903 6 6 4.1727 -1.4338 -2.1879 7 8 3.5697 -1.8889 -3.1367 8 6 5.6741 -1.5475 -2.1245 9 8 6.1502 -2.2253 -3.2890 10 6 7.4958 -2.4126 -3.3888 11 6 8.0823 -3.0550 -4.4687 12 6 9.4117 -3.1538 -4.4089 13 16 9.9942 -2.4094 -2.9259 14 6 8.3529 -1.9861 -2.4566 15 7 2.0196 -0.6924 1.1996 16 6 2.0823 0.2229 2.3470 17 6 2.5883 -0.5212 3.5559 18 8 2.8685 -1.6982 3.4702 19 7 2.7283 0.1210 4.7325 20 6 3.1880 -0.5559 5.8324 21 1 3.4384 -1.6037 5.7560 22 6 3.3320 0.1060 7.0456 23 7 3.0279 1.3811 7.1385 24 14 3.9591 -0.8161 8.5442 25 1 5.3158 -1.3512 8.2643 26 1 4.0207 0.1086 9.7045 27 1 3.0386 -1.9391 8.8553 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5136 -0.8901 31 1 1.7518 -0.1585 -2.1369 32 1 1.6055 -1.7199 -1.2949 33 1 3.9825 -0.4627 -0.4313 34 1 6.1124 -0.5505 -2.0802 35 1 5.9587 -2.1092 -1.2348 36 1 7.5071 -3.4449 -5.2954 37 1 10.0351 -3.6201 -5.1575 38 1 8.0794 -1.4628 -1.5522 39 1 2.9173 -1.1204 1.0290 40 1 2.7588 1.0464 2.1183 41 1 1.0869 0.6165 2.5525 42 1 2.5038 1.0622 4.8011 43 1 3.1280 1.8432 7.9856 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491642490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:19 Heat of formation + Delta-G solvation = -65.249422 kcal Electronic energy + Delta-G solvation = -26087.559395 eV Core-core repulsion = 22067.428480 eV Total energy + Delta-G solvation = -4020.130915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.56448 -39.51887 -38.46262 -37.08226 -36.15534 -34.24271 -33.82303 -31.42883 -31.01979 -29.50710 -29.24108 -26.72377 -25.89608 -24.07824 -23.70096 -20.93514 -20.70290 -20.05589 -19.39414 -18.66930 -17.99594 -17.56797 -17.10711 -16.75881 -16.30602 -16.01563 -15.54417 -15.32296 -14.70521 -14.51277 -14.47458 -14.38593 -13.94821 -13.64016 -13.47720 -13.19770 -13.05665 -12.88506 -12.61110 -12.51012 -12.17915 -11.96224 -11.81571 -11.72004 -11.48013 -11.30580 -11.22459 -11.11065 -10.93262 -10.48704 -10.26883 -10.11826 -9.56046 -9.37307 -9.19365 -8.55185 -8.34104 -8.20896 -8.02778 -6.47506 -3.88657 0.62910 1.26708 1.63002 2.27320 2.31419 2.39622 3.15866 3.22320 3.26412 3.37123 3.82618 3.97021 4.20769 4.31183 4.54292 4.57560 4.64687 4.72235 4.90360 4.90875 5.03589 5.10700 5.18611 5.21774 5.44661 5.52909 5.56650 5.61329 5.66611 5.71044 5.83885 5.88810 5.91809 6.04882 6.17127 6.28945 6.83029 7.06557 7.12578 7.48334 7.49514 7.88415 7.99550 8.54376 9.11652 9.47307 9.98371 10.69915 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009177 B = 0.002205 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.486431 B =12694.198333 C =15358.010552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.050 0.950 4 C 0.120 3.880 5 N -0.727 5.727 6 C 0.520 3.480 7 O -0.517 6.517 8 C 0.041 3.959 9 O -0.278 6.278 10 C 0.116 3.884 11 C -0.140 4.140 12 C -0.189 4.189 13 S 0.122 5.878 14 C -0.325 4.325 15 N -0.664 5.664 16 C 0.049 3.951 17 C 0.438 3.562 18 O -0.583 6.583 19 N -0.562 5.562 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.401 0.599 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.152 0.848 37 H 0.173 0.827 38 H 0.168 0.832 39 H 0.346 0.654 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.392 0.608 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.260 -0.107 -20.873 22.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.068 0.932 4 C -0.003 4.003 5 N -0.382 5.382 6 C 0.304 3.696 7 O -0.391 6.391 8 C -0.038 4.038 9 O -0.191 6.191 10 C 0.060 3.940 11 C -0.172 4.172 12 C -0.324 4.324 13 S 0.382 5.618 14 C -0.461 4.461 15 N -0.299 5.299 16 C -0.083 4.083 17 C 0.223 3.777 18 O -0.467 6.467 19 N -0.198 5.198 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.236 0.764 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.169 0.831 37 H 0.190 0.810 38 H 0.186 0.814 39 H 0.168 0.832 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.225 0.775 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.651 -1.200 -20.775 22.536 hybrid contribution -0.158 0.920 0.776 1.214 sum 8.493 -0.280 -19.998 21.729 Atomic orbital electron populations 1.21740 0.93221 1.03071 1.01644 1.21824 0.97277 0.95920 0.88865 0.93222 1.21655 0.78386 1.02362 0.97893 1.45867 1.08456 1.60151 1.23716 1.19918 0.88542 0.78307 0.82788 1.90757 1.69702 1.46043 1.32595 1.22461 0.92987 0.99021 0.89294 1.86181 1.18061 1.73743 1.41153 1.17885 0.83123 0.98245 0.94793 1.19479 0.94031 1.03914 0.99734 1.25546 0.97910 1.06717 1.02253 1.84246 1.06285 1.55621 1.15603 1.25415 0.96857 1.16859 1.06963 1.60125 1.34749 1.32325 1.02722 1.21764 1.01571 0.93742 0.91260 1.19785 0.85196 0.88223 0.84475 1.90533 1.55401 1.16066 1.84740 1.41856 1.57578 1.12437 1.07944 1.19650 1.40139 0.96449 0.86806 0.87959 1.25270 0.97564 0.95784 0.99258 1.69603 1.48439 1.08852 1.27323 0.85913 0.79432 0.78870 0.79998 1.19897 1.20947 1.19841 0.91437 0.91892 0.92411 0.90529 0.90020 0.76398 0.88927 0.88512 0.83085 0.80959 0.81417 0.83245 0.93842 0.89326 0.77453 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.41 37.16 0.35 -1.07 16 2 C 0.07 0.77 2.81 -67.71 -0.19 0.58 16 3 H 0.05 0.49 7.80 -51.93 -0.40 0.08 16 4 C 0.12 1.28 5.31 -4.04 -0.02 1.25 16 5 N -0.73 -7.38 4.99 -60.30 -0.30 -7.68 16 6 C 0.52 6.23 7.91 -10.98 -0.09 6.15 16 7 O -0.52 -8.33 16.50 -14.36 -0.24 -8.56 16 8 C 0.04 0.39 5.35 36.01 0.19 0.59 16 9 O -0.28 -3.39 9.74 -40.37 -0.39 -3.78 16 10 C 0.12 1.22 6.64 -41.04 -0.27 0.95 16 11 C -0.14 -1.27 10.17 -41.10 -0.42 -1.69 16 12 C -0.19 -1.37 11.22 29.05 0.33 -1.04 16 13 S 0.12 0.95 23.34 -107.50 -2.51 -1.56 16 14 C -0.33 -2.96 10.09 29.12 0.29 -2.67 16 15 N -0.66 -9.67 5.93 -107.98 -0.64 -10.31 16 16 C 0.05 0.79 5.97 -4.97 -0.03 0.76 16 17 C 0.44 9.83 7.82 -10.98 -0.09 9.75 16 18 O -0.58 -15.25 15.78 5.55 0.09 -15.16 16 19 N -0.56 -13.69 5.29 -10.96 -0.06 -13.75 16 20 C -0.30 -8.17 9.68 -14.94 -0.14 -8.32 16 21 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -23.92 13.05 55.50 0.72 -23.19 16 24 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.67 7.45 -51.93 -0.39 0.29 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 3.41 7.37 -40.82 -0.30 3.11 16 34 H 0.09 0.64 7.85 -51.93 -0.41 0.24 16 35 H 0.10 0.78 7.87 -51.93 -0.41 0.37 16 36 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.17 1.26 7.02 -52.48 -0.37 0.89 16 39 H 0.35 5.12 6.41 -39.29 -0.25 4.87 16 40 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 41 H 0.09 1.34 7.44 -51.93 -0.39 0.95 16 42 H 0.39 9.12 7.90 -40.82 -0.32 8.79 16 43 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -34.15 382.67 -8.47 -42.62 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -5.70 Total: 14.24 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -0.18 Total: 5.75 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.27 Total: -54.93 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.54 Total: -27.50 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.15 -8.47 -42.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491642490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.629 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds