Wall clock time and date at job start Tue Mar 31 2020 23:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47489 * 2 1 4 4 C 1.46492 * 119.99743 * 269.99983 * 3 2 1 5 5 C 1.53002 * 109.47317 * 269.99644 * 4 3 2 6 6 N 1.46501 * 109.47321 * 180.02562 * 5 4 3 7 7 C 1.34772 * 119.99947 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00118 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00108 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.47361 * 180.02562 * 9 7 6 11 11 C 1.76192 * 100.00083 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00009 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00106 * 179.97438 * 11 10 9 14 14 N 1.31626 * 119.99735 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00185 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47045 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46870 * 120.00201 * 15 13 11 18 18 H 1.48495 * 109.47616 * 240.00116 * 15 13 11 19 19 C 1.34778 * 119.99701 * 89.99237 * 3 2 1 20 20 O 1.21284 * 119.99600 * 179.97438 * 19 3 2 21 21 C 1.50697 * 120.00291 * 0.02562 * 19 3 2 22 22 C 1.50702 * 109.46965 * 179.97438 * 21 19 3 23 23 C 1.41385 * 128.00459 * 90.00055 * 22 21 19 24 24 N 1.30179 * 106.39389 * 179.97438 * 23 22 21 25 25 O 1.20927 * 111.60367 * 359.97438 * 24 23 22 26 26 C 1.34037 * 111.56699 * 359.97438 * 25 24 23 27 27 H 1.08994 * 109.47482 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46846 * 300.00146 * 1 2 3 29 29 H 1.09002 * 109.47207 * 60.00006 * 1 2 3 30 30 H 1.08994 * 109.47335 * 239.99813 * 2 1 3 31 31 H 1.09008 * 109.46604 * 119.99715 * 2 1 3 32 32 H 1.09004 * 109.47327 * 29.99938 * 4 3 2 33 33 H 1.09005 * 109.47254 * 149.99821 * 4 3 2 34 34 H 1.09006 * 109.46680 * 300.00197 * 5 4 3 35 35 H 1.08991 * 109.46802 * 60.00108 * 5 4 3 36 36 H 0.96998 * 119.99770 * 0.02562 * 6 5 4 37 37 H 1.09004 * 109.47210 * 300.00896 * 9 7 6 38 38 H 1.08999 * 109.46789 * 60.00578 * 9 7 6 39 39 H 0.97003 * 119.99840 * 179.97438 * 14 13 11 40 40 H 1.08997 * 109.47662 * 59.99660 * 21 19 3 41 41 H 1.08998 * 109.46934 * 299.99061 * 21 19 3 42 42 H 1.07993 * 126.80227 * 359.70041 * 23 22 21 43 43 H 1.08002 * 126.77549 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.7076 1.8313 -1.7104 6 7 3.9520 2.5223 -2.9788 7 6 5.1649 2.4514 -3.5621 8 8 6.0540 1.8151 -3.0371 9 6 5.4162 3.1618 -4.8672 10 16 7.1257 2.8774 -5.3896 11 6 7.1423 3.7939 -6.8943 12 1 6.2517 4.3095 -7.2224 13 6 8.2997 3.8534 -7.6580 14 7 9.3849 3.2246 -7.2583 15 14 8.3171 4.8244 -9.2537 16 1 6.9813 5.4332 -9.4772 17 1 9.3414 5.8964 -9.1695 18 1 8.6428 3.9162 -10.3824 19 6 2.2430 2.0165 1.1672 20 8 2.6477 3.1598 1.1672 21 6 1.9921 1.3060 2.4723 22 6 2.3190 2.2292 3.6177 23 6 1.4575 3.1339 4.2798 24 7 2.1718 3.7151 5.1999 25 8 3.3117 3.3112 5.1999 26 6 3.5055 2.3829 4.2527 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5818 1.6876 -2.0284 33 1 2.0957 3.1410 -1.1384 34 1 4.3884 2.2154 -0.9506 35 1 3.8745 0.7621 -1.8407 36 1 3.2411 3.0315 -3.3985 37 1 4.7356 2.7774 -5.6270 38 1 5.2488 4.2309 -4.7369 39 1 10.1937 3.2658 -7.7922 40 1 2.6225 0.4187 2.5300 41 1 0.9442 1.0117 2.5302 42 1 0.4147 3.3112 4.0621 43 1 4.4263 1.8610 4.0377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496662913.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:12 Heat of formation + Delta-G solvation = -8.900224 kcal Electronic energy + Delta-G solvation = -26059.065543 eV Core-core repulsion = 22041.378112 eV Total energy + Delta-G solvation = -4017.687430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.24699 -40.51554 -39.10612 -36.75142 -35.11999 -34.61770 -32.51864 -32.43233 -31.62090 -30.22439 -29.39467 -27.55535 -25.48928 -24.02370 -23.66746 -23.15691 -21.85800 -20.51748 -19.41179 -18.23176 -18.00994 -17.83672 -17.42942 -16.92046 -16.35267 -15.92724 -15.53365 -15.41603 -15.12164 -14.80739 -14.41855 -14.27972 -14.08259 -13.86023 -13.82306 -13.45410 -13.23507 -13.12749 -12.68547 -12.56549 -12.41468 -12.28070 -12.06771 -11.77823 -11.51192 -11.41678 -11.07191 -11.02304 -10.76629 -10.72344 -10.31005 -9.81972 -9.75251 -9.47982 -9.17897 -9.08336 -8.93392 -8.23737 -6.50450 -6.22149 -3.92628 1.16433 1.84124 2.18506 2.44005 2.92373 3.07972 3.10011 3.21429 3.28868 3.34656 3.76165 3.89363 4.05845 4.19943 4.23369 4.35106 4.39124 4.54259 4.66717 4.75260 4.76985 4.84550 4.87307 5.12620 5.13197 5.16149 5.18215 5.21817 5.24234 5.30075 5.57701 5.61235 5.63368 5.67051 5.78876 5.88732 6.05602 6.13320 6.56064 6.87642 7.59581 7.65504 7.74203 7.91671 8.35148 8.58593 9.23346 10.85358 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.001820 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.388164 B =15381.032064 C =16295.840367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.100 3.900 3 N -0.610 5.610 4 C 0.106 3.894 5 C 0.109 3.891 6 N -0.737 5.737 7 C 0.533 3.467 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.514 3.486 20 O -0.522 6.522 21 C -0.061 4.061 22 C -0.191 4.191 23 C 0.004 3.996 24 N -0.366 5.366 25 O 0.098 5.902 26 C -0.039 4.039 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.187 0.813 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.273 -8.501 20.093 31.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.023 4.023 3 N -0.344 5.344 4 C -0.018 4.018 5 C -0.017 4.017 6 N -0.393 5.393 7 C 0.319 3.681 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.503 5.503 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C 0.301 3.699 20 O -0.397 6.397 21 C -0.102 4.102 22 C -0.196 4.196 23 C -0.175 4.175 24 N -0.069 5.069 25 O 0.034 5.966 26 C -0.121 4.121 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.232 0.768 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.204 0.796 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -20.622 -8.053 21.893 31.136 hybrid contribution -1.481 0.901 -2.670 3.183 sum -22.103 -7.152 19.224 30.154 Atomic orbital electron populations 1.22231 0.95503 1.02691 1.02717 1.21699 0.94656 0.81888 1.04081 1.47857 1.66379 1.14658 1.05538 1.21582 0.95804 0.99371 0.84997 1.21546 0.96025 0.97686 0.86438 1.45838 1.14135 1.55142 1.24145 1.20308 0.81335 0.80431 0.85994 1.90703 1.43149 1.40865 1.64337 1.23528 1.07829 1.02809 0.96191 1.85404 1.02504 1.68233 1.27276 1.22908 1.00690 1.36751 1.07951 0.90850 1.25002 0.94607 0.95654 0.98396 1.70028 1.01574 1.40500 1.38176 0.86108 0.78268 0.79369 0.81691 1.19617 1.20558 1.20571 1.20576 0.77424 0.86819 0.85074 1.90779 1.44143 1.17694 1.87084 1.19942 1.04746 0.97145 0.88320 1.20718 0.94022 1.03395 1.01446 1.24883 1.02376 0.95927 0.94338 1.73877 0.91367 1.19982 1.21691 1.84828 1.23819 1.42685 1.45279 1.25828 1.00769 0.94131 0.91333 0.91075 0.92374 0.92018 0.89572 0.89887 0.89733 0.89102 0.91323 0.91600 0.76790 0.89160 0.89137 0.92233 0.87218 0.87294 0.79553 0.76718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.47 10.24 37.16 0.38 -0.09 16 2 C 0.10 0.35 5.93 -4.04 -0.02 0.33 16 3 N -0.61 -4.15 2.47 -173.68 -0.43 -4.58 16 4 C 0.11 0.85 5.52 -4.05 -0.02 0.82 16 5 C 0.11 1.25 6.00 -4.04 -0.02 1.23 16 6 N -0.74 -9.68 5.56 -60.29 -0.33 -10.02 16 7 C 0.53 9.97 7.85 -10.99 -0.09 9.89 16 8 O -0.52 -11.84 15.86 5.56 0.09 -11.75 16 9 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 10 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 11 C -0.53 -15.26 9.50 30.94 0.29 -14.97 16 12 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 15 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.51 4.42 7.67 -10.99 -0.08 4.33 16 20 O -0.52 -7.02 15.61 5.55 0.09 -6.93 16 21 C -0.06 -0.31 4.84 -29.04 -0.14 -0.45 16 22 C -0.19 -1.45 4.82 -104.42 -0.50 -1.95 16 23 C 0.00 0.03 12.16 -17.06 -0.21 -0.17 16 24 N -0.37 -3.99 12.07 30.36 0.37 -3.63 16 25 O 0.10 0.97 11.20 17.18 0.19 1.16 16 26 C -0.04 -0.29 12.26 29.74 0.36 0.08 16 27 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.06 0.15 7.22 -51.93 -0.38 -0.22 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.30 8.07 -51.93 -0.42 -0.12 16 31 H 0.08 0.15 6.44 -51.92 -0.33 -0.19 16 32 H 0.08 0.48 8.07 -51.93 -0.42 0.07 16 33 H 0.09 0.85 7.42 -51.93 -0.39 0.47 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.40 3.93 8.47 -40.82 -0.35 3.58 16 37 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 38 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.11 0.29 7.40 -51.93 -0.38 -0.10 16 41 H 0.11 0.29 7.19 -51.93 -0.37 -0.08 16 42 H 0.19 1.14 8.06 -52.49 -0.42 0.71 16 43 H 0.22 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 387.24 15.07 5.84 5.84 Total: -1.00 -39.68 387.24 -6.59 -46.26 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -5.96 Total: -1.60 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 0.07 Total: -1.82 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.34 Total: -43.71 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: 0.37 Total: -17.52 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.68 -6.59 -46.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496662913.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.362 kcal (2) G-P(sol) polarization free energy of solvation -39.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds