Wall clock time and date at job start Tue Mar 31 2020 23:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47489 * 2 1 4 4 C 1.46492 * 119.99743 * 269.99983 * 3 2 1 5 5 C 1.53002 * 109.47317 * 269.99644 * 4 3 2 6 6 N 1.46501 * 109.47321 * 180.02562 * 5 4 3 7 7 C 1.34772 * 119.99947 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00118 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00108 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.47361 * 180.02562 * 9 7 6 11 11 C 1.76192 * 100.00083 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00009 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00106 * 179.97438 * 11 10 9 14 14 N 1.31626 * 119.99735 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00185 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47045 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46870 * 120.00201 * 15 13 11 18 18 H 1.48495 * 109.47616 * 240.00116 * 15 13 11 19 19 C 1.34778 * 119.99701 * 89.99237 * 3 2 1 20 20 O 1.21284 * 119.99600 * 179.97438 * 19 3 2 21 21 C 1.50697 * 120.00291 * 0.02562 * 19 3 2 22 22 C 1.50702 * 109.46965 * 179.97438 * 21 19 3 23 23 C 1.41385 * 128.00459 * 90.00055 * 22 21 19 24 24 N 1.30179 * 106.39389 * 179.97438 * 23 22 21 25 25 O 1.20927 * 111.60367 * 359.97438 * 24 23 22 26 26 C 1.34037 * 111.56699 * 359.97438 * 25 24 23 27 27 H 1.08994 * 109.47482 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46846 * 300.00146 * 1 2 3 29 29 H 1.09002 * 109.47207 * 60.00006 * 1 2 3 30 30 H 1.08994 * 109.47335 * 239.99813 * 2 1 3 31 31 H 1.09008 * 109.46604 * 119.99715 * 2 1 3 32 32 H 1.09004 * 109.47327 * 29.99938 * 4 3 2 33 33 H 1.09005 * 109.47254 * 149.99821 * 4 3 2 34 34 H 1.09006 * 109.46680 * 300.00197 * 5 4 3 35 35 H 1.08991 * 109.46802 * 60.00108 * 5 4 3 36 36 H 0.96998 * 119.99770 * 0.02562 * 6 5 4 37 37 H 1.09004 * 109.47210 * 300.00896 * 9 7 6 38 38 H 1.08999 * 109.46789 * 60.00578 * 9 7 6 39 39 H 0.97003 * 119.99840 * 179.97438 * 14 13 11 40 40 H 1.08997 * 109.47662 * 59.99660 * 21 19 3 41 41 H 1.08998 * 109.46934 * 299.99061 * 21 19 3 42 42 H 1.07993 * 126.80227 * 359.70041 * 23 22 21 43 43 H 1.08002 * 126.77549 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.7076 1.8313 -1.7104 6 7 3.9520 2.5223 -2.9788 7 6 5.1649 2.4514 -3.5621 8 8 6.0540 1.8151 -3.0371 9 6 5.4162 3.1618 -4.8672 10 16 7.1257 2.8774 -5.3896 11 6 7.1423 3.7939 -6.8943 12 1 6.2517 4.3095 -7.2224 13 6 8.2997 3.8534 -7.6580 14 7 9.3849 3.2246 -7.2583 15 14 8.3171 4.8244 -9.2537 16 1 6.9813 5.4332 -9.4772 17 1 9.3414 5.8964 -9.1695 18 1 8.6428 3.9162 -10.3824 19 6 2.2430 2.0165 1.1672 20 8 2.6477 3.1598 1.1672 21 6 1.9921 1.3060 2.4723 22 6 2.3190 2.2292 3.6177 23 6 1.4575 3.1339 4.2798 24 7 2.1718 3.7151 5.1999 25 8 3.3117 3.3112 5.1999 26 6 3.5055 2.3829 4.2527 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5818 1.6876 -2.0284 33 1 2.0957 3.1410 -1.1384 34 1 4.3884 2.2154 -0.9506 35 1 3.8745 0.7621 -1.8407 36 1 3.2411 3.0315 -3.3985 37 1 4.7356 2.7774 -5.6270 38 1 5.2488 4.2309 -4.7369 39 1 10.1937 3.2658 -7.7922 40 1 2.6225 0.4187 2.5300 41 1 0.9442 1.0117 2.5302 42 1 0.4147 3.3112 4.0621 43 1 4.4263 1.8610 4.0377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496662913.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:11 Heat of formation + Delta-G solvation = -38.225765 kcal Electronic energy + Delta-G solvation = -26060.337194 eV Core-core repulsion = 22041.378112 eV Total energy + Delta-G solvation = -4018.959081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.88798 -41.19722 -40.50280 -37.45793 -35.93398 -35.51530 -34.58989 -33.18187 -32.40553 -31.05334 -30.30641 -28.47800 -27.63158 -24.49743 -24.37870 -23.79837 -22.49037 -21.89226 -20.13632 -19.72727 -18.81853 -18.61235 -18.10046 -17.86589 -17.57933 -16.94007 -16.88490 -16.69412 -16.30217 -15.90326 -15.61552 -15.20837 -14.82498 -14.81135 -14.60929 -14.35188 -14.34609 -13.99057 -13.73649 -13.53650 -13.16583 -13.12815 -13.01366 -12.92010 -12.71257 -12.59386 -12.29602 -12.24024 -11.85322 -11.72211 -11.38639 -11.16364 -11.10429 -10.94728 -10.33113 -10.28151 -10.19030 -9.80428 -8.67550 -8.35338 -6.13430 0.57439 1.20452 1.27465 1.41329 1.45176 1.55518 1.57860 1.60349 1.89502 2.26537 2.38029 2.49331 2.98941 3.31804 3.36068 3.59206 3.75740 3.82026 3.89714 4.00341 4.05022 4.13355 4.20513 4.29710 4.37427 4.45062 4.50242 4.56224 4.62988 4.73242 4.75401 4.80246 4.87723 4.97608 5.05164 5.13929 5.32532 5.41954 5.46483 5.55328 6.19731 6.34826 6.45262 7.06132 7.13869 7.20669 7.29340 8.74172 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.001820 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.388164 B =15381.032064 C =16295.840367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 N -0.605 5.605 4 C 0.114 3.886 5 C 0.114 3.886 6 N -0.711 5.711 7 C 0.534 3.466 8 O -0.566 6.566 9 C -0.129 4.129 10 S -0.153 6.153 11 C -0.545 4.545 12 H 0.084 0.916 13 C 0.012 3.988 14 N -0.911 5.911 15 Si 1.000 3.000 16 H -0.256 1.256 17 H -0.275 1.275 18 H -0.273 1.273 19 C 0.509 3.491 20 O -0.580 6.580 21 C -0.053 4.053 22 C -0.199 4.199 23 C -0.002 4.002 24 N -0.403 5.403 25 O 0.077 5.923 26 C -0.042 4.042 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.418 0.582 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.271 0.729 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.207 0.793 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.975 -9.308 19.211 32.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.028 4.028 3 N -0.338 5.338 4 C -0.009 4.009 5 C -0.012 4.012 6 N -0.365 5.365 7 C 0.320 3.680 8 O -0.444 6.444 9 C -0.280 4.280 10 S 0.074 5.926 11 C -0.693 4.693 12 H 0.102 0.898 13 C -0.193 4.193 14 N -0.548 5.548 15 Si 0.822 3.178 16 H -0.180 1.180 17 H -0.201 1.201 18 H -0.198 1.198 19 C 0.298 3.702 20 O -0.459 6.459 21 C -0.093 4.093 22 C -0.203 4.203 23 C -0.180 4.180 24 N -0.110 5.110 25 O 0.016 5.984 26 C -0.123 4.123 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.255 0.745 37 H 0.133 0.867 38 H 0.126 0.874 39 H 0.080 0.920 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.224 0.776 43 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -23.394 -8.891 21.019 32.682 hybrid contribution -0.742 1.093 -2.331 2.680 sum -24.136 -7.797 18.688 31.506 Atomic orbital electron populations 1.22198 0.94532 1.03556 1.02465 1.22001 0.95382 0.79897 1.05541 1.47982 1.65421 1.15825 1.04576 1.21460 0.93752 0.99185 0.86547 1.21617 0.97813 0.97277 0.84469 1.45553 1.12716 1.54136 1.24137 1.20085 0.82377 0.79947 0.85579 1.90691 1.45106 1.43179 1.65447 1.23369 1.02800 1.04255 0.97605 1.85588 1.09547 1.69099 1.28352 1.23238 1.01337 1.36730 1.07977 0.89825 1.26148 0.94016 0.96651 1.02482 1.70190 1.02430 1.42180 1.39988 0.84888 0.78930 0.77628 0.76389 1.17987 1.20070 1.19815 1.21227 0.76208 0.86249 0.86477 1.90761 1.46935 1.20318 1.87935 1.20073 1.07260 0.96880 0.85074 1.21069 0.93671 1.03596 1.02004 1.25378 1.03383 0.95548 0.93736 1.73861 0.92073 1.21652 1.23462 1.84776 1.23689 1.43574 1.46331 1.26512 1.02040 0.93328 0.90459 0.89622 0.92070 0.92888 0.89180 0.87523 0.86557 0.90468 0.94450 0.91264 0.74450 0.86681 0.87383 0.91992 0.84166 0.84284 0.77649 0.73870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.30 10.24 71.98 0.74 0.44 16 2 C 0.09 0.33 5.93 86.38 0.51 0.84 16 3 N -0.61 -6.77 2.47 -821.80 -2.03 -8.80 16 4 C 0.11 1.60 5.52 86.38 0.48 2.07 16 5 C 0.11 2.49 6.00 86.38 0.52 3.01 16 6 N -0.71 -17.53 5.56 -463.06 -2.57 -20.10 16 7 C 0.53 19.71 7.85 87.66 0.69 20.40 16 8 O -0.57 -26.48 15.86 -3.04 -0.05 -26.52 16 9 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 10 S -0.15 -8.52 20.57 -56.49 -1.16 -9.69 16 11 C -0.55 -31.14 9.50 67.95 0.65 -30.49 16 12 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 13 C 0.01 0.67 5.49 84.86 0.47 1.13 16 14 N -0.91 -56.13 13.22 21.65 0.29 -55.84 16 15 Si 1.00 43.64 29.55 68.60 2.03 45.66 16 16 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 17 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 19 C 0.51 7.88 7.67 87.66 0.67 8.55 16 20 O -0.58 -15.54 15.61 -3.04 -0.05 -15.59 16 21 C -0.05 -0.38 4.84 29.10 0.14 -0.24 16 22 C -0.20 -2.74 4.82 -19.73 -0.10 -2.83 16 23 C 0.00 -0.03 12.16 85.71 1.04 1.01 16 24 N -0.40 -9.03 12.07 -59.25 -0.72 -9.75 16 25 O 0.08 1.57 11.20 71.65 0.80 2.38 16 26 C -0.04 -0.60 12.26 67.17 0.82 0.23 16 27 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.06 0.09 7.22 -2.39 -0.02 0.07 16 29 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.09 0.31 8.07 -2.39 -0.02 0.29 16 31 H 0.11 -0.10 6.44 -2.38 -0.02 -0.11 16 32 H 0.12 0.92 8.07 -2.38 -0.02 0.90 16 33 H 0.08 1.35 7.42 -2.38 -0.02 1.33 16 34 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.42 7.11 8.47 -92.71 -0.79 6.33 16 37 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 38 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 39 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.14 0.16 7.40 -2.39 -0.02 0.14 16 41 H 0.14 0.17 7.19 -2.39 -0.02 0.15 16 42 H 0.21 2.31 8.06 -2.91 -0.02 2.28 16 43 H 0.25 1.57 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -91.69 387.24 3.86 -87.83 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.25 Total: 10.95 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 7.07 Total: -0.53 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -5.03 Total: -94.49 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: 0.71 Total: -39.73 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.69 kcal Total: -91.69 3.86 -87.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496662913.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.602 kcal (2) G-P(sol) polarization free energy of solvation -91.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds