Wall clock time and date at job start Tue Mar 31 2020 23:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46762 * 124.35170 * 2 1 4 4 C 1.54477 * 105.47551 * 197.03691 * 3 2 1 5 5 C 1.54630 * 101.76569 * 334.58863 * 4 3 2 6 6 H 1.09002 * 110.48556 * 266.11734 * 5 4 3 7 7 C 1.50704 * 110.59937 * 143.52760 * 5 4 3 8 8 O 1.21282 * 120.00074 * 1.91611 * 7 5 4 9 9 N 1.34779 * 119.99781 * 181.91418 * 7 5 4 10 10 C 1.47066 * 136.05759 * 359.63458 * 9 7 5 11 11 C 1.53757 * 87.88559 * 152.96096 * 10 9 7 12 12 N 1.46510 * 114.57153 * 272.66024 * 11 10 9 13 13 C 1.34777 * 119.99990 * 248.66953 * 12 11 10 14 14 O 1.21282 * 119.99872 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99929 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.46938 * 180.02562 * 15 13 12 17 17 C 1.76201 * 99.99746 * 179.97438 * 16 15 13 18 18 H 1.07998 * 119.99992 * 0.02562 * 17 16 15 19 19 C 1.38797 * 119.99966 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00143 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47519 * 59.99697 * 21 19 17 23 23 H 1.48500 * 109.47209 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46541 * 299.99750 * 21 19 17 25 25 C 1.47069 * 136.05386 * 179.97438 * 9 7 5 26 26 C 1.34421 * 124.34583 * 180.02562 * 2 1 3 27 27 O 1.21276 * 124.94354 * 359.61003 * 26 2 1 28 28 H 1.09003 * 109.47436 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46917 * 299.95062 * 1 2 3 30 30 H 1.08995 * 109.47140 * 59.94239 * 1 2 3 31 31 H 1.08999 * 110.24818 * 316.04081 * 3 2 1 32 32 H 1.09001 * 110.24271 * 77.95124 * 3 2 1 33 33 H 1.08992 * 110.97522 * 216.46703 * 4 3 2 34 34 H 1.09005 * 110.96644 * 92.70564 * 4 3 2 35 35 H 1.08996 * 113.46728 * 267.68810 * 10 9 7 36 36 H 1.09004 * 113.46679 * 38.13267 * 10 9 7 37 37 H 1.09000 * 114.09111 * 139.78051 * 11 10 9 38 38 H 0.96999 * 119.99538 * 68.67878 * 12 11 10 39 39 H 1.09001 * 109.46957 * 300.00642 * 15 13 12 40 40 H 1.09000 * 109.46833 * 60.00347 * 15 13 12 41 41 H 0.97000 * 120.00384 * 179.97438 * 20 19 17 42 42 H 1.09000 * 113.46966 * 321.86781 * 25 9 7 43 43 H 1.08999 * 113.46230 * 92.31212 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7009 0.7487 -0.4362 5 6 3.6898 -0.7379 -0.0110 6 1 4.1197 -0.8534 0.9839 7 6 4.4405 -1.5806 -1.0097 8 8 4.9769 -1.0572 -1.9633 9 7 4.5158 -2.9160 -0.8431 10 6 4.0264 -3.8891 0.1449 11 6 4.0404 -4.9451 -0.9726 12 7 2.8115 -5.0070 -1.7678 13 6 2.0044 -6.0827 -1.6783 14 8 2.2953 -6.9992 -0.9392 15 6 0.7405 -6.1466 -2.4966 16 16 -0.1195 -7.7027 -2.1578 17 6 -1.5173 -7.5160 -3.2143 18 1 -1.6250 -6.6250 -3.8150 19 6 -2.4794 -8.5145 -3.2752 20 7 -2.3474 -9.6012 -2.5443 21 14 -3.9609 -8.3169 -4.3958 22 1 -3.5031 -8.1736 -5.8011 23 1 -4.8334 -9.5128 -4.2784 24 1 -4.7244 -7.1068 -3.9980 25 6 5.1288 -4.0404 -1.5663 26 6 2.2234 -1.1098 -0.0005 27 8 1.7945 -2.2442 0.0058 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5131 0.8905 30 1 -0.3633 0.5147 -0.8894 31 1 1.8982 1.9385 -0.7099 32 1 2.3297 1.6435 1.0002 33 1 4.4754 1.3008 0.0960 34 1 3.8264 0.8451 -1.5147 35 1 4.7397 -4.0930 0.9435 36 1 3.0276 -3.6635 0.5185 37 1 4.3976 -5.9246 -0.6547 38 1 2.5788 -4.2738 -2.3587 39 1 0.0941 -5.3095 -2.2327 40 1 0.9907 -6.0925 -3.5562 41 1 -3.0200 -10.2989 -2.5866 42 1 5.0690 -3.9436 -2.6503 43 1 6.1328 -4.2840 -1.2190 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498100892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:14 Heat of formation + Delta-G solvation = -49.080064 kcal Electronic energy + Delta-G solvation = -27520.178514 eV Core-core repulsion = 23500.748755 eV Total energy + Delta-G solvation = -4019.429759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45397 -40.28057 -38.80480 -37.82703 -36.68935 -33.47500 -33.18918 -32.39347 -30.27469 -28.87794 -27.64682 -27.13175 -26.16561 -25.44856 -23.09371 -21.73322 -20.66989 -20.21424 -18.84965 -17.94552 -17.68405 -17.35823 -16.83433 -16.56595 -16.07414 -15.85278 -15.40079 -15.14954 -14.77312 -14.76553 -14.23257 -14.13623 -13.77419 -13.75627 -13.34527 -13.16564 -13.13118 -12.91705 -12.84939 -12.54020 -12.47070 -12.27604 -12.06003 -11.84369 -11.55382 -11.10716 -11.01075 -11.00961 -10.74340 -10.20838 -10.04054 -9.79317 -9.42405 -9.15397 -9.03011 -8.95945 -8.81931 -8.19944 -6.45344 -6.18156 -3.88044 1.95667 2.26887 2.50713 2.74568 3.02510 3.08961 3.25900 3.29292 3.32742 3.71710 3.77413 3.82422 4.12727 4.23972 4.34274 4.44961 4.56539 4.75551 4.80356 4.93774 5.00244 5.09905 5.13395 5.14112 5.16832 5.19330 5.31811 5.36747 5.41455 5.44916 5.57787 5.60582 5.76265 5.90277 5.95950 6.10222 6.21764 6.64249 6.68062 7.41835 7.62905 7.74191 7.76581 7.79814 8.38732 8.64450 9.27047 10.89260 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013303 B = 0.002793 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.247286 B =10023.642268 C =11464.178324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.621 5.621 3 C 0.101 3.899 4 C -0.116 4.116 5 C -0.144 4.144 6 H 0.133 0.867 7 C 0.561 3.439 8 O -0.538 6.538 9 N -0.634 5.634 10 C 0.067 3.933 11 C 0.118 3.882 12 N -0.710 5.710 13 C 0.540 3.460 14 O -0.517 6.517 15 C -0.152 4.152 16 S -0.058 6.058 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.095 3.905 26 C 0.524 3.476 27 O -0.501 6.501 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.126 0.874 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.083 0.917 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.755 24.030 7.147 28.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.356 5.356 3 C -0.022 4.022 4 C -0.154 4.154 5 C -0.168 4.168 6 H 0.150 0.850 7 C 0.349 3.651 8 O -0.415 6.415 9 N -0.368 5.368 10 C -0.057 4.057 11 C 0.010 3.990 12 N -0.363 5.363 13 C 0.327 3.673 14 O -0.391 6.391 15 C -0.303 4.303 16 S 0.169 5.831 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.504 5.504 21 Si 0.744 3.256 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.028 4.028 26 C 0.309 3.691 27 O -0.376 6.376 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.133 0.867 37 H 0.144 0.856 38 H 0.234 0.766 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.084 22.211 7.891 27.459 hybrid contribution -1.361 1.811 -1.656 2.806 sum 12.724 24.022 6.235 27.890 Atomic orbital electron populations 1.21636 0.77164 1.04454 1.01657 1.48082 1.06870 1.07055 1.73554 1.22168 0.90303 0.87561 1.02185 1.22611 0.96484 0.91680 1.04667 1.22097 0.95309 0.97436 1.01976 0.84978 1.19232 0.80168 0.79986 0.85723 1.90718 1.48067 1.71092 1.31658 1.49518 1.53946 1.04198 1.29174 1.24090 1.02999 0.85120 0.93507 1.22015 0.85747 0.99158 0.92104 1.45499 1.22759 1.21890 1.46104 1.20280 0.84092 0.80996 0.81952 1.90690 1.73100 1.36844 1.38500 1.23516 0.97013 1.07801 1.01940 1.85337 1.23500 1.15574 1.58711 1.22836 1.08588 1.07731 1.29197 0.91027 1.24979 0.98097 0.94466 0.96002 1.70007 1.34954 1.07159 1.38242 0.86235 0.81122 0.77756 0.80446 1.19950 1.20821 1.19968 1.23467 0.97648 0.82329 0.99379 1.20309 0.87760 0.84915 0.76082 1.90747 1.77594 1.20111 1.49134 0.89353 0.91836 0.91794 0.89813 0.90672 0.88504 0.88065 0.89135 0.86655 0.85599 0.76558 0.89160 0.89300 0.92163 0.89846 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 11.14 59.85 0.67 1.34 16 2 N -0.62 -5.17 3.33 -180.29 -0.60 -5.77 16 3 C 0.10 0.51 7.35 -3.12 -0.02 0.48 16 4 C -0.12 -0.71 6.47 -25.10 -0.16 -0.87 16 5 C -0.14 -1.23 3.17 -91.78 -0.29 -1.52 16 6 H 0.13 0.84 8.14 -51.93 -0.42 0.41 16 7 C 0.56 6.50 7.39 -10.98 -0.08 6.41 16 8 O -0.54 -7.71 16.29 5.56 0.09 -7.62 16 9 N -0.63 -6.89 3.54 -185.06 -0.65 -7.55 16 10 C 0.07 0.70 7.72 -8.36 -0.06 0.63 16 11 C 0.12 1.37 4.61 -67.68 -0.31 1.06 16 12 N -0.71 -10.33 5.40 -53.49 -0.29 -10.62 16 13 C 0.54 10.39 7.85 -10.98 -0.09 10.30 16 14 O -0.52 -11.65 15.45 5.56 0.09 -11.57 16 15 C -0.15 -3.21 6.16 36.01 0.22 -2.99 16 16 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 17 C -0.54 -15.53 9.50 30.94 0.29 -15.24 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 20 N -0.87 -26.45 13.22 55.49 0.73 -25.72 16 21 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 25 C 0.09 0.92 8.37 -8.50 -0.07 0.85 16 26 C 0.52 5.62 7.42 -10.86 -0.08 5.54 16 27 O -0.50 -7.07 13.67 5.56 0.08 -7.00 16 28 H 0.09 0.84 7.53 -51.93 -0.39 0.44 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.10 0.80 7.04 -51.93 -0.37 0.44 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.12 1.50 5.19 -51.93 -0.27 1.23 16 37 H 0.13 1.50 7.45 -51.93 -0.39 1.11 16 38 H 0.40 5.46 8.76 -40.82 -0.36 5.10 16 39 H 0.09 1.83 8.14 -51.91 -0.42 1.41 16 40 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 41 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -38.22 376.66 -8.17 -46.39 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.97 Total: 2.87 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -0.09 Total: 8.05 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.81 Total: -49.66 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: 0.25 Total: -26.19 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.22 -8.17 -46.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498100892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.694 kcal (2) G-P(sol) polarization free energy of solvation -38.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds