Wall clock time and date at job start Tue Mar 31 2020 23:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46759 * 124.35033 * 2 1 4 4 C 1.54479 * 105.47517 * 162.98796 * 3 2 1 5 5 C 1.54626 * 101.76392 * 25.41845 * 4 3 2 6 6 H 1.08995 * 110.49167 * 94.01491 * 5 4 3 7 7 C 1.50700 * 110.48743 * 216.52734 * 5 4 3 8 8 O 1.21286 * 120.00090 * 359.97438 * 7 5 4 9 9 N 1.34782 * 120.00402 * 180.02562 * 7 5 4 10 10 C 1.47575 * 134.49211 * 179.97438 * 9 7 5 11 11 C 1.53947 * 86.11581 * 155.35781 * 10 9 7 12 12 N 1.46495 * 113.74651 * 137.95068 * 11 10 9 13 13 C 1.34779 * 120.00299 * 154.99856 * 12 11 10 14 14 O 1.21283 * 119.99753 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99843 * 180.02562 * 13 12 11 16 16 S 1.81001 * 109.46896 * 179.97438 * 15 13 12 17 17 C 1.76192 * 100.00053 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00436 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99929 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99846 * 179.72260 * 19 17 16 21 21 Si 1.86795 * 120.00110 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47088 * 89.99559 * 21 19 17 23 23 H 1.48505 * 109.47015 * 209.99475 * 21 19 17 24 24 H 1.48498 * 109.47362 * 329.99901 * 21 19 17 25 25 C 1.47574 * 134.48979 * 359.97438 * 9 7 5 26 26 C 1.34425 * 124.34922 * 180.02562 * 2 1 3 27 27 O 1.21276 * 124.94268 * 0.43827 * 26 2 1 28 28 H 1.09004 * 109.47093 * 89.99926 * 1 2 3 29 29 H 1.09007 * 109.46583 * 209.99460 * 1 2 3 30 30 H 1.08996 * 109.46951 * 329.99312 * 1 2 3 31 31 H 1.08998 * 110.24626 * 43.98744 * 3 2 1 32 32 H 1.09001 * 110.24755 * 281.98927 * 3 2 1 33 33 H 1.08996 * 110.97153 * 267.29988 * 4 3 2 34 34 H 1.08996 * 111.00427 * 143.55127 * 4 3 2 35 35 H 1.08995 * 113.77256 * 41.05400 * 10 9 7 36 36 H 1.08999 * 113.76844 * 269.65340 * 10 9 7 37 37 H 1.09000 * 113.73931 * 269.15398 * 11 10 9 38 38 H 0.97004 * 119.99811 * 335.00402 * 12 11 10 39 39 H 1.08998 * 109.46989 * 60.00366 * 15 13 12 40 40 H 1.08996 * 109.47123 * 299.99392 * 15 13 12 41 41 H 0.97000 * 120.00210 * 180.02562 * 20 19 17 42 42 H 1.08996 * 113.77237 * 90.34107 * 25 9 7 43 43 H 1.09001 * 113.77053 * 318.94329 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7010 0.7487 0.4356 5 6 3.6898 -0.7378 0.0099 6 1 4.1215 -0.8533 -0.9842 7 6 4.4403 -1.5786 1.0103 8 8 4.9463 -1.0580 1.9818 9 7 4.5502 -2.9091 0.8249 10 6 5.1907 -4.0082 1.5730 11 6 4.1685 -4.9317 0.8858 12 7 4.7380 -6.1979 0.4187 13 6 3.9469 -7.2791 0.2714 14 8 2.7635 -7.2038 0.5260 15 6 4.5330 -8.5819 -0.2086 16 16 3.2279 -9.8326 -0.3016 17 6 4.1652 -11.2109 -0.8727 18 1 5.2251 -11.1063 -1.0520 19 6 3.5416 -12.4316 -1.0912 20 7 4.2409 -13.4599 -1.5231 21 14 1.7087 -12.6129 -0.7804 22 1 0.9617 -12.2903 -2.0227 23 1 1.4115 -14.0096 -0.3727 24 1 1.2955 -11.6829 0.3011 25 6 4.0782 -3.8519 -0.2077 26 6 2.2235 -1.1098 -0.0005 27 8 1.7947 -2.2442 -0.0086 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.8985 1.9382 0.7102 32 1 2.3306 1.6430 -1.0004 33 1 3.8270 0.8446 1.5140 34 1 4.4758 1.3009 -0.0962 35 1 5.0626 -3.9376 2.6531 36 1 6.2225 -4.1980 1.2772 37 1 3.2464 -5.0636 1.4519 38 1 5.6846 -6.2583 0.2155 39 1 5.3033 -8.9123 0.4882 40 1 4.9724 -8.4407 -1.1960 41 1 3.8051 -14.3128 -1.6761 42 1 4.7832 -3.9958 -1.0265 43 1 3.0617 -3.6565 -0.5494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498100897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:17 Heat of formation + Delta-G solvation = -54.339194 kcal Electronic energy + Delta-G solvation = -26804.077645 eV Core-core repulsion = 22784.419833 eV Total energy + Delta-G solvation = -4019.657812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.49146 -40.27742 -38.99235 -37.87807 -36.78581 -33.80058 -33.31653 -32.43403 -30.34274 -29.02635 -27.60768 -27.22256 -26.43614 -25.60971 -23.12027 -21.79119 -20.62457 -20.58150 -19.00206 -17.97758 -17.78980 -17.43579 -16.92898 -16.80454 -16.29054 -16.14961 -15.38987 -15.05609 -14.98525 -14.74619 -14.31947 -14.18142 -13.83986 -13.70097 -13.43770 -13.30449 -13.22560 -12.97810 -12.83588 -12.78711 -12.72585 -12.45575 -12.21294 -12.02757 -11.62954 -11.42712 -11.25960 -11.00216 -10.63112 -10.38425 -10.15056 -9.85210 -9.55074 -9.25496 -9.08876 -8.99598 -8.97449 -8.49863 -6.91616 -6.28661 -4.00392 1.85628 2.18546 2.35907 2.58619 2.81972 2.89102 3.32259 3.35712 3.51642 3.65774 3.69986 3.73170 4.03157 4.28351 4.33730 4.37813 4.49373 4.64023 4.72035 4.72605 4.77972 4.90407 4.92728 5.03188 5.09344 5.10481 5.25756 5.26891 5.27928 5.29530 5.36880 5.54185 5.65815 5.75464 5.88839 5.99324 6.00820 6.45710 6.53588 7.29458 7.53965 7.65697 7.71457 7.94336 8.41745 8.44014 9.17564 10.80486 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021995 B = 0.002107 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.695377 B =13286.301292 C =14233.083974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.621 5.621 3 C 0.101 3.899 4 C -0.117 4.117 5 C -0.145 4.145 6 H 0.134 0.866 7 C 0.559 3.441 8 O -0.536 6.536 9 N -0.630 5.630 10 C 0.100 3.900 11 C 0.121 3.879 12 N -0.727 5.727 13 C 0.533 3.467 14 O -0.512 6.512 15 C -0.124 4.124 16 S -0.141 6.141 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.075 3.925 26 C 0.526 3.474 27 O -0.506 6.506 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.129 0.871 38 H 0.402 0.598 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.271 0.729 42 H 0.086 0.914 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.187 32.848 1.750 32.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.356 5.356 3 C -0.022 4.022 4 C -0.155 4.155 5 C -0.169 4.169 6 H 0.152 0.848 7 C 0.347 3.653 8 O -0.413 6.413 9 N -0.365 5.365 10 C -0.023 4.023 11 C 0.014 3.986 12 N -0.381 5.381 13 C 0.319 3.681 14 O -0.385 6.385 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.114 4.114 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.049 4.049 26 C 0.311 3.689 27 O -0.381 6.381 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.147 0.853 38 H 0.237 0.763 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.878 32.653 2.669 32.815 hybrid contribution 1.248 -0.355 -0.613 1.435 sum -0.631 32.297 2.056 32.369 Atomic orbital electron populations 1.21608 0.77230 1.03517 1.02230 1.48099 1.06843 1.07122 1.73554 1.22202 0.90342 0.87406 1.02258 1.22632 0.96518 0.91617 1.04764 1.22105 0.95198 0.97510 1.02083 0.84821 1.19293 0.79965 0.80141 0.85930 1.90717 1.49057 1.71028 1.30529 1.49492 1.54465 1.04807 1.27698 1.23589 0.97587 0.82179 0.98983 1.22870 0.98434 0.81828 0.95434 1.45871 1.12427 1.09785 1.70027 1.20357 0.86673 0.84517 0.76546 1.90727 1.15554 1.84171 1.48092 1.23284 1.04248 0.95301 1.04659 1.84830 1.13321 1.05092 1.88236 1.22314 0.98066 0.95228 1.51283 0.89361 1.24720 0.98752 0.94561 0.93327 1.69940 1.36548 1.01669 1.43523 0.86731 0.85018 0.79046 0.81045 1.19213 1.19966 1.15891 1.24188 1.03202 0.84769 0.92730 1.20279 0.87764 0.84808 0.76002 1.90731 1.77741 1.20341 1.49262 0.92223 0.90321 0.90793 0.89736 0.90572 0.87970 0.88391 0.89165 0.89062 0.85330 0.76311 0.88311 0.88362 0.91948 0.89569 0.86519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.56 10.96 59.85 0.66 1.21 16 2 N -0.62 -4.57 3.33 -180.29 -0.60 -5.17 16 3 C 0.10 0.41 7.35 -3.12 -0.02 0.39 16 4 C -0.12 -0.63 6.48 -25.10 -0.16 -0.79 16 5 C -0.14 -1.16 3.11 -91.78 -0.29 -1.45 16 6 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 7 C 0.56 6.32 7.35 -10.98 -0.08 6.24 16 8 O -0.54 -7.48 16.22 5.55 0.09 -7.39 16 9 N -0.63 -6.79 3.49 -178.57 -0.62 -7.41 16 10 C 0.10 0.95 8.59 -2.98 -0.03 0.92 16 11 C 0.12 1.38 4.43 -70.15 -0.31 1.07 16 12 N -0.73 -8.54 5.36 -55.35 -0.30 -8.83 16 13 C 0.53 9.08 7.85 -10.98 -0.09 8.99 16 14 O -0.51 -10.89 15.46 5.55 0.09 -10.80 16 15 C -0.12 -2.31 6.16 36.01 0.22 -2.09 16 16 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 17 C -0.52 -14.90 10.04 30.94 0.31 -14.59 16 18 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 19 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 20 N -0.88 -26.48 13.97 55.49 0.78 -25.70 16 21 Si 0.86 21.79 27.74 -169.99 -4.71 17.07 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.23 -5.97 6.74 56.52 0.38 -5.59 16 25 C 0.07 0.78 7.90 -2.98 -0.02 0.76 16 26 C 0.53 5.32 7.41 -10.86 -0.08 5.24 16 27 O -0.51 -6.92 14.05 5.56 0.08 -6.85 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.59 7.93 -51.93 -0.41 0.18 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.10 0.73 7.00 -51.93 -0.36 0.37 16 34 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.66 8.12 -51.93 -0.42 0.24 16 37 H 0.13 1.81 7.46 -51.93 -0.39 1.43 16 38 H 0.40 3.39 8.73 -40.82 -0.36 3.03 16 39 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 40 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.12 1.46 5.27 -51.93 -0.27 1.19 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -38.39 374.51 -7.56 -45.95 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.02 Total: 0.45 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 0.01 Total: 8.58 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.75 Total: -47.12 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: 0.25 Total: -25.04 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.07 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.39 -7.56 -45.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498100897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.386 kcal (2) G-P(sol) polarization free energy of solvation -38.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds