Wall clock time and date at job start Tue Mar 31 2020 23:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47483 * 2 1 4 4 N 1.46497 * 109.47010 * 120.00582 * 2 1 3 5 5 C 1.34781 * 119.99966 * 274.99143 * 4 2 1 6 6 O 1.21281 * 119.99447 * 0.02562 * 5 4 2 7 7 C 1.50696 * 119.99942 * 179.97438 * 5 4 2 8 8 S 1.81000 * 109.46987 * 180.02562 * 7 5 4 9 9 C 1.76194 * 100.00273 * 180.02562 * 8 7 5 10 10 H 1.08004 * 120.00126 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00367 * 180.02562 * 9 8 7 12 12 N 1.31631 * 119.99707 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99969 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47549 * 0.02562 * 13 11 9 15 15 H 1.48511 * 109.46801 * 120.00040 * 13 11 9 16 16 H 1.48492 * 109.46935 * 239.99799 * 13 11 9 17 17 C 1.53012 * 109.46834 * 240.00216 * 2 1 3 18 18 H 1.09001 * 109.46909 * 175.00170 * 17 2 1 19 19 C 1.52995 * 109.46814 * 295.00116 * 17 2 1 20 20 N 1.46498 * 109.47009 * 55.00061 * 17 2 1 21 21 C 1.34776 * 119.99871 * 154.99656 * 20 17 2 22 22 O 1.21280 * 119.99688 * 0.02562 * 21 20 17 23 23 C 1.50698 * 119.99971 * 179.97438 * 21 20 17 24 24 C 1.50705 * 109.46910 * 180.02562 * 23 21 20 25 25 C 1.41379 * 128.00562 * 269.95837 * 24 23 21 26 26 N 1.30179 * 106.39170 * 180.02562 * 25 24 23 27 27 O 1.20917 * 111.60766 * 359.97438 * 26 25 24 28 28 C 1.34044 * 111.56675 * 359.97438 * 27 26 25 29 29 H 1.09007 * 109.47273 * 59.99351 * 1 2 3 30 30 H 1.08994 * 109.47483 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46889 * 299.99801 * 1 2 3 32 32 H 0.97001 * 120.00384 * 94.99850 * 4 2 1 33 33 H 1.08998 * 109.47221 * 300.00551 * 7 5 4 34 34 H 1.09002 * 109.46996 * 60.01012 * 7 5 4 35 35 H 0.96991 * 119.99925 * 180.02562 * 12 11 9 36 36 H 1.09004 * 109.46805 * 180.02562 * 19 17 2 37 37 H 1.08998 * 109.47565 * 300.00078 * 19 17 2 38 38 H 1.09001 * 109.47339 * 60.00317 * 19 17 2 39 39 H 0.96997 * 120.00264 * 335.00502 * 20 17 2 40 40 H 1.09006 * 109.46832 * 60.00600 * 23 21 20 41 41 H 1.08999 * 109.47512 * 300.00652 * 23 21 20 42 42 H 1.07999 * 126.80492 * 0.02562 * 25 24 23 43 43 H 1.07999 * 126.77991 * 179.73774 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8584 1.1583 2.4116 7 6 2.6489 -0.7291 3.5876 8 16 2.7094 0.4338 4.9733 9 6 3.3126 -0.6315 6.2406 10 1 3.5226 -1.6677 6.0204 11 6 3.5180 -0.1389 7.5219 12 7 3.2615 1.1240 7.7905 13 14 4.1581 -1.2681 8.8652 14 1 4.3663 -2.6296 8.3100 15 1 5.4475 -0.7420 9.3812 16 1 3.1703 -1.3301 9.9722 17 6 2.0399 -0.7213 -1.2494 18 1 3.1262 -0.6444 -1.2953 19 6 1.6351 -2.1954 -1.1881 20 7 1.4557 -0.1036 -2.4424 21 6 2.0911 -0.1936 -3.6276 22 8 3.1462 -0.7864 -3.7064 23 6 1.4899 0.4413 -4.8550 24 6 2.3900 0.1971 -6.0389 25 6 3.4563 1.0015 -6.5022 26 7 3.9435 0.3988 -7.5482 27 8 3.3504 -0.6275 -7.7873 28 6 2.3651 -0.8442 -6.9047 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2489 -1.6319 1.1525 33 1 1.9759 -1.5508 3.8324 34 1 3.6480 -1.1216 3.3985 35 1 3.4054 1.4683 8.6857 36 1 1.9988 -2.7093 -2.0779 37 1 2.0696 -2.6550 -0.3004 38 1 0.5487 -2.2723 -1.1422 39 1 0.6117 0.3703 -2.3794 40 1 1.3837 1.5141 -4.6941 41 1 0.5102 0.0040 -5.0475 42 1 3.7988 1.9317 -6.0735 43 1 1.6824 -1.6809 -6.8903 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508498733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:46 Heat of formation + Delta-G solvation = -12.540672 kcal Electronic energy + Delta-G solvation = -26115.175338 eV Core-core repulsion = 22097.330046 eV Total energy + Delta-G solvation = -4017.845292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.29958 -40.51770 -39.37718 -37.12499 -34.99100 -34.13612 -32.56903 -32.45353 -31.51934 -30.08689 -28.89347 -28.50835 -25.53267 -25.00362 -23.42320 -22.62466 -21.18363 -20.59285 -20.00871 -18.42679 -18.11068 -17.91414 -17.42403 -16.70276 -16.31837 -15.84614 -15.61855 -15.39476 -14.97828 -14.82635 -14.67360 -14.22834 -14.02776 -13.87116 -13.48103 -13.37519 -13.23342 -12.99026 -12.62067 -12.56377 -12.45496 -12.09975 -11.96929 -11.64203 -11.28921 -11.14283 -11.08835 -11.04388 -10.77902 -10.76116 -10.34896 -9.84099 -9.80130 -9.54870 -9.45369 -9.11012 -9.02997 -8.26889 -6.53103 -6.24468 -3.95092 1.11032 1.82015 2.21104 2.62115 2.87670 3.00910 3.09087 3.19931 3.27231 3.32157 3.68290 3.86267 4.17795 4.21617 4.23710 4.29415 4.48321 4.58512 4.69014 4.83984 4.85949 5.04337 5.10646 5.11342 5.13505 5.16176 5.23961 5.34746 5.41588 5.56449 5.59339 5.63523 5.73175 5.84379 5.86856 6.04309 6.09863 6.11867 6.53453 7.03928 7.57364 7.60278 7.80223 7.87630 8.32940 8.52667 9.21250 10.83041 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028906 B = 0.001662 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.428653 B =16844.673791 C =17005.004691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.138 3.862 3 H 0.094 0.906 4 N -0.732 5.732 5 C 0.535 3.465 6 O -0.515 6.515 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.535 4.535 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.136 3.864 18 H 0.095 0.905 19 C -0.167 4.167 20 N -0.722 5.722 21 C 0.514 3.486 22 O -0.529 6.529 23 C -0.064 4.064 24 C -0.187 4.187 25 C 0.005 3.995 26 N -0.365 5.365 27 O 0.097 5.903 28 C -0.043 4.043 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.399 0.601 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.268 0.732 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.402 0.598 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.189 0.811 43 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.479 -5.218 -28.268 29.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.032 3.968 3 H 0.112 0.888 4 N -0.389 5.389 5 C 0.321 3.679 6 O -0.389 6.389 7 C -0.305 4.305 8 S 0.167 5.833 9 C -0.684 4.684 10 H 0.092 0.908 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C 0.031 3.969 18 H 0.113 0.887 19 C -0.225 4.225 20 N -0.377 5.377 21 C 0.299 3.701 22 O -0.404 6.404 23 C -0.104 4.104 24 C -0.192 4.192 25 C -0.174 4.174 26 N -0.069 5.069 27 O 0.033 5.967 28 C -0.125 4.125 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.234 0.766 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.238 0.762 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.206 0.794 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -7.174 -3.265 -28.955 30.009 hybrid contribution -0.181 -2.256 1.639 2.795 sum -7.355 -5.521 -27.316 28.822 Atomic orbital electron populations 1.22268 0.95198 1.02525 1.02620 1.20967 0.94421 0.97760 0.83692 0.88811 1.46087 1.69642 1.14033 1.09134 1.20333 0.76661 0.87203 0.83690 1.90701 1.48113 1.15715 1.84368 1.23538 1.03756 1.04918 0.98274 1.85387 1.86311 1.12881 0.98731 1.22910 1.50938 0.98208 0.96317 0.90846 1.24996 0.95073 0.95549 0.97975 1.70023 1.45561 1.13236 1.21456 0.86112 0.78538 0.80132 0.80689 1.19610 1.20554 1.20556 1.21116 0.99625 0.92640 0.83543 0.88678 1.22239 1.02218 0.95347 1.02718 1.46066 1.26177 1.57458 1.07962 1.20523 0.84991 0.80232 0.84320 1.90759 1.22173 1.42061 1.85395 1.19890 0.98168 1.03535 0.88822 1.20700 1.01166 0.97125 1.00180 1.24939 0.95500 1.02669 0.94326 1.73879 1.17860 0.96861 1.18273 1.84823 1.35099 1.31929 1.44852 1.25767 0.94504 1.00911 0.91357 0.92215 0.91834 0.91004 0.76555 0.89144 0.89137 0.92218 0.91715 0.91386 0.91651 0.76150 0.87089 0.87246 0.79401 0.76860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.00 37.15 0.33 -1.07 16 2 C 0.14 1.37 2.62 -67.93 -0.18 1.19 16 3 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 4 N -0.73 -8.82 4.99 -53.81 -0.27 -9.09 16 5 C 0.53 9.36 7.81 -10.99 -0.09 9.27 16 6 O -0.52 -11.00 15.52 5.56 0.09 -10.92 16 7 C -0.15 -2.99 6.16 36.00 0.22 -2.77 16 8 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 9 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 10 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 11 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 12 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16 13 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 C 0.14 1.12 2.62 -67.93 -0.18 0.94 16 18 H 0.10 1.01 7.58 -51.93 -0.39 0.61 16 19 C -0.17 -1.20 9.00 37.15 0.33 -0.86 16 20 N -0.72 -4.46 4.99 -53.80 -0.27 -4.72 16 21 C 0.51 3.90 7.79 -10.99 -0.09 3.81 16 22 O -0.53 -6.48 15.70 5.56 0.09 -6.39 16 23 C -0.06 -0.26 6.28 -29.03 -0.18 -0.44 16 24 C -0.19 -1.26 4.82 -104.42 -0.50 -1.77 16 25 C 0.00 0.04 12.16 -17.06 -0.21 -0.17 16 26 N -0.37 -3.79 12.07 30.36 0.37 -3.42 16 27 O 0.10 0.87 11.20 17.17 0.19 1.06 16 28 C -0.04 -0.26 12.26 29.74 0.36 0.10 16 29 H 0.06 0.33 6.29 -51.93 -0.33 0.00 16 30 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.40 3.81 6.58 -40.82 -0.27 3.54 16 33 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 34 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.46 6.29 -51.93 -0.33 0.13 16 38 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 39 H 0.40 1.46 6.58 -40.82 -0.27 1.19 16 40 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.19 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.21 0.43 8.06 -52.49 -0.42 0.01 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -38.34 379.75 -6.14 -44.48 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.59 Total: 0.62 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 0.03 Total: -4.56 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.56 Total: -42.42 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.37 Total: -16.25 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.34 -6.14 -44.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508498733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.936 kcal (2) G-P(sol) polarization free energy of solvation -38.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds