Wall clock time and date at job start Tue Mar 31 2020 23:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 5 5 C 1.34777 * 120.00199 * 275.00460 * 4 2 1 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 2 8 8 S 1.80999 * 109.46903 * 179.72354 * 7 5 4 9 9 C 1.76200 * 99.99730 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00351 * 0.02562 * 9 8 7 11 11 C 1.38796 * 120.00095 * 179.97438 * 9 8 7 12 12 N 1.31634 * 119.99941 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00384 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47506 * 89.99666 * 13 11 9 15 15 H 1.48498 * 109.47217 * 210.00061 * 13 11 9 16 16 H 1.48502 * 109.46767 * 329.99807 * 13 11 9 17 17 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 18 18 H 1.09007 * 109.46426 * 300.00013 * 17 2 1 19 19 C 1.52997 * 109.47284 * 180.02562 * 17 2 1 20 20 N 1.46499 * 109.47481 * 59.99477 * 17 2 1 21 21 C 1.34777 * 120.00199 * 205.00060 * 20 17 2 22 22 O 1.21283 * 119.99750 * 0.02562 * 21 20 17 23 23 C 1.50699 * 119.99772 * 180.02562 * 21 20 17 24 24 C 1.50701 * 109.46833 * 180.02562 * 23 21 20 25 25 C 1.41387 * 128.00310 * 269.68014 * 24 23 21 26 26 N 1.30175 * 106.39220 * 179.89722 * 25 24 23 27 27 O 1.20927 * 111.60938 * 0.38861 * 26 25 24 28 28 C 1.34045 * 111.55923 * 359.74694 * 27 26 25 29 29 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 30 30 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 32 32 H 0.97000 * 119.99484 * 94.99557 * 4 2 1 33 33 H 1.09004 * 109.46965 * 299.72211 * 7 5 4 34 34 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 35 35 H 0.97002 * 120.00288 * 179.97438 * 12 11 9 36 36 H 1.08993 * 109.47268 * 299.99524 * 19 17 2 37 37 H 1.09007 * 109.46797 * 59.99463 * 19 17 2 38 38 H 1.09002 * 109.47048 * 179.97438 * 19 17 2 39 39 H 0.97000 * 119.99478 * 25.00281 * 20 17 2 40 40 H 1.09000 * 109.46890 * 299.99723 * 23 21 20 41 41 H 1.08997 * 109.47040 * 60.00297 * 23 21 20 42 42 H 1.08000 * 126.80085 * 0.02722 * 25 24 23 43 43 H 1.07997 * 126.76777 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1586 2.4115 7 6 2.6553 -0.7271 3.5861 8 16 2.7223 0.4375 4.9700 9 6 3.3309 -0.6263 6.2359 10 1 3.5396 -1.6629 6.0161 11 6 3.5431 -0.1319 7.5153 12 7 3.2902 1.1319 7.7829 13 14 4.1890 -1.2595 8.8572 14 1 5.6735 -1.2207 8.8645 15 1 3.6755 -0.8058 10.1747 16 1 3.7314 -2.6485 8.5993 17 6 2.0400 -0.7211 -1.2493 18 1 1.6766 -1.7488 -1.2492 19 6 3.5700 -0.7217 -1.2489 20 7 1.5516 -0.0306 -2.4454 21 6 1.4230 -0.7029 -3.6064 22 8 1.7111 -1.8798 -3.6608 23 6 0.9211 0.0077 -4.8370 24 6 0.8698 -0.9608 -5.9904 25 6 1.8846 -1.2475 -6.9323 26 7 1.3947 -2.1443 -7.7387 27 8 0.2589 -2.4359 -7.4433 28 6 -0.1611 -1.7539 -6.3684 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.2490 -1.6317 1.1526 33 1 1.9840 -1.5491 3.8351 34 1 3.6536 -1.1193 3.3925 35 1 3.4381 1.4774 8.6771 36 1 3.9337 0.3058 -1.2487 37 1 3.9329 -1.2358 -0.3589 38 1 3.9333 -1.2359 -2.1388 39 1 1.3209 0.9106 -2.4018 40 1 -0.0780 0.4001 -4.6478 41 1 1.5940 0.8294 -5.0818 42 1 2.8714 -0.8106 -6.9731 43 1 -1.1301 -1.8234 -5.8967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508498738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:51 Heat of formation + Delta-G solvation = -17.411424 kcal Electronic energy + Delta-G solvation = -26109.095884 eV Core-core repulsion = 22091.039381 eV Total energy + Delta-G solvation = -4018.056504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.31201 -40.46464 -39.36416 -36.97345 -34.99955 -34.16569 -32.58476 -32.45625 -31.45261 -30.38647 -29.00589 -28.43528 -25.51538 -24.27583 -23.39790 -22.58582 -21.21813 -20.96276 -20.23985 -18.40343 -18.08885 -17.91328 -17.41699 -16.84712 -15.99744 -15.88502 -15.81039 -15.15915 -15.00244 -14.82711 -14.40188 -14.13315 -14.04254 -13.73295 -13.64435 -13.49512 -13.26089 -12.80879 -12.67034 -12.50911 -12.49811 -12.06267 -11.87353 -11.65252 -11.58986 -11.08716 -11.05347 -10.96713 -10.78326 -10.77928 -10.37117 -9.85327 -9.81351 -9.58706 -9.46432 -9.10054 -8.99606 -8.27967 -6.53563 -6.24673 -3.95469 1.09861 1.80091 2.20587 2.59106 2.86322 3.00804 3.10143 3.20518 3.26880 3.32163 3.70183 3.84561 4.17023 4.18209 4.22776 4.27692 4.48971 4.65253 4.70280 4.85625 4.88765 5.06341 5.10757 5.14445 5.20697 5.22812 5.26620 5.43112 5.46027 5.57161 5.60311 5.62906 5.81895 5.84298 5.95310 6.05870 6.07483 6.10524 6.53443 7.04117 7.56793 7.60230 7.79526 7.85718 8.32391 8.52188 9.20948 10.82713 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.038018 B = 0.001631 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.323966 B =17160.809324 C =17432.258022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.093 0.907 4 N -0.731 5.731 5 C 0.536 3.464 6 O -0.516 6.516 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.137 3.863 18 H 0.093 0.907 19 C -0.164 4.164 20 N -0.721 5.721 21 C 0.515 3.485 22 O -0.530 6.530 23 C -0.064 4.064 24 C -0.187 4.187 25 C 0.004 3.996 26 N -0.366 5.366 27 O 0.097 5.903 28 C -0.042 4.042 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.399 0.601 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.268 0.732 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.403 0.597 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.188 0.812 43 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.681 -2.502 -27.718 28.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.032 3.968 3 H 0.111 0.889 4 N -0.386 5.386 5 C 0.323 3.677 6 O -0.390 6.390 7 C -0.305 4.305 8 S 0.167 5.833 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.197 1.197 17 C 0.032 3.968 18 H 0.111 0.889 19 C -0.222 4.222 20 N -0.373 5.373 21 C 0.301 3.699 22 O -0.405 6.405 23 C -0.104 4.104 24 C -0.192 4.192 25 C -0.175 4.175 26 N -0.069 5.069 27 O 0.033 5.967 28 C -0.124 4.124 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.233 0.767 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.238 0.762 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.205 0.795 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.478 -1.911 -28.599 29.386 hybrid contribution 0.715 -1.496 1.644 2.335 sum -5.763 -3.407 -26.955 27.774 Atomic orbital electron populations 1.22191 0.94936 1.02369 1.02666 1.21002 0.94384 0.97780 0.83661 0.88912 1.45948 1.69572 1.13984 1.09109 1.20304 0.76680 0.87172 0.83592 1.90700 1.48280 1.15703 1.84286 1.23539 1.03701 1.04948 0.98296 1.85374 1.86140 1.12785 0.98983 1.22869 1.50877 0.98175 0.96521 0.90903 1.24988 0.95066 0.95539 0.97943 1.70015 1.45470 1.13167 1.21634 0.86170 0.79032 0.80195 0.80122 1.20260 1.20734 1.19690 1.21144 0.94686 0.97580 0.83413 0.88900 1.22172 0.94456 1.02745 1.02810 1.45923 1.67810 1.14214 1.09383 1.20488 0.77814 0.87438 0.84183 1.90755 1.49125 1.15915 1.84736 1.19888 1.04591 0.96772 0.89166 1.20698 0.94443 1.03727 1.00308 1.24922 1.02037 0.97320 0.93220 1.73877 0.94153 1.15876 1.23014 1.84827 1.22411 1.51428 1.38043 1.25786 1.01733 0.94432 0.90484 0.91958 0.92421 0.91293 0.76657 0.89150 0.89148 0.92168 0.92083 0.91053 0.92008 0.76233 0.87190 0.87144 0.79468 0.76814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.33 37.16 0.35 -1.16 16 2 C 0.14 1.34 2.21 -67.93 -0.15 1.19 16 3 H 0.09 1.03 7.58 -51.93 -0.39 0.63 16 4 N -0.73 -8.64 4.38 -53.81 -0.24 -8.88 16 5 C 0.54 9.20 7.81 -10.98 -0.09 9.12 16 6 O -0.52 -10.82 15.52 5.55 0.09 -10.73 16 7 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 8 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 9 C -0.54 -15.02 9.50 30.94 0.29 -14.73 16 10 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 11 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 12 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 13 Si 0.92 21.15 29.55 -169.99 -5.02 16.13 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 C 0.14 1.11 2.20 -67.93 -0.15 0.96 16 18 H 0.09 0.86 7.58 -51.93 -0.39 0.46 16 19 C -0.16 -1.42 9.33 37.16 0.35 -1.08 16 20 N -0.72 -4.31 4.38 -53.81 -0.24 -4.55 16 21 C 0.52 3.73 7.79 -10.99 -0.09 3.65 16 22 O -0.53 -6.25 15.70 5.55 0.09 -6.17 16 23 C -0.06 -0.25 6.28 -29.03 -0.18 -0.43 16 24 C -0.19 -1.22 4.82 -104.42 -0.50 -1.72 16 25 C 0.00 0.03 12.16 -17.06 -0.21 -0.17 16 26 N -0.37 -3.68 12.07 30.36 0.37 -3.31 16 27 O 0.10 0.85 11.20 17.16 0.19 1.04 16 28 C -0.04 -0.26 12.26 29.74 0.36 0.11 16 29 H 0.06 0.42 7.45 -51.93 -0.39 0.04 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.40 3.77 8.39 -40.82 -0.34 3.43 16 33 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 34 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 35 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.63 7.44 -51.93 -0.39 0.25 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.40 1.43 8.39 -40.82 -0.34 1.09 16 40 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.19 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.22 0.46 8.06 -52.49 -0.42 0.03 16 LS Contribution 387.45 15.07 5.84 5.84 Total: -1.00 -37.90 387.45 -6.31 -44.21 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.02 Total: 0.28 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 0.11 Total: -5.02 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.63 Total: -41.80 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.37 Total: -15.86 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.90 -6.31 -44.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508498738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.795 kcal (2) G-P(sol) polarization free energy of solvation -37.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds