Wall clock time and date at job start Tue Mar 31 2020 23:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 C 1.52999 * 109.47338 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.47580 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00516 * 180.02562 * 7 6 5 9 9 O 1.21684 * 119.99747 * 359.97438 * 8 7 6 10 10 C 1.46725 * 120.00477 * 180.02562 * 8 7 6 11 11 C 1.36340 * 126.64294 * 179.97438 * 10 8 7 12 12 N 1.33699 * 107.44848 * 179.97438 * 11 10 8 13 13 C 1.30612 * 108.99512 * 0.02562 * 12 11 10 14 14 O 1.33659 * 109.15664 * 359.75094 * 13 12 11 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47012 * 89.99727 * 24 22 20 26 26 H 1.48501 * 109.47302 * 209.99797 * 24 22 20 27 27 H 1.48501 * 109.46788 * 330.00118 * 24 22 20 28 28 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 29 29 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 30 30 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 32 32 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 33 33 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 34 34 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 35 35 H 1.09003 * 109.47199 * 300.00414 * 6 5 4 36 36 H 1.09002 * 109.47200 * 60.00255 * 6 5 4 37 37 H 0.97009 * 120.00152 * 359.97438 * 7 6 5 38 38 H 1.07991 * 126.27582 * 359.97438 * 11 10 8 39 39 H 1.08001 * 125.42237 * 179.97438 * 13 12 11 40 40 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 41 41 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 42 42 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 43 43 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0748 -1.3347 -2.5629 7 7 5.5349 -1.2318 -2.6244 8 6 6.2079 -1.7968 -3.6462 9 8 5.6028 -2.3929 -4.5175 10 6 7.6703 -1.6943 -3.7075 11 6 8.4826 -2.2116 -4.6726 12 7 9.7405 -1.8921 -4.3515 13 6 9.7345 -1.2070 -3.2395 14 8 8.4737 -1.0634 -2.8196 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.2404 1.1182 7.7959 24 14 4.1282 -1.2762 8.8729 25 1 5.6125 -1.2380 8.8939 26 1 3.6027 -0.8253 10.1866 27 1 3.6725 -2.6643 8.6073 28 1 -0.3632 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2615 -2.1371 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4262 35 1 3.7865 -2.3849 -2.5190 36 1 3.6402 -0.8754 -3.4508 37 1 6.0173 -0.7562 -1.9300 38 1 8.1676 -2.7759 -5.5378 39 1 10.6088 -0.8155 -2.7407 40 1 2.2492 -1.6319 1.1524 41 1 1.9698 -1.5528 3.8298 42 1 3.6437 -1.1227 3.4038 43 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001509963585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:09 Heat of formation + Delta-G solvation = -63.645611 kcal Electronic energy + Delta-G solvation = -25626.996144 eV Core-core repulsion = 21606.934775 eV Total energy + Delta-G solvation = -4020.061368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.93422 -40.05912 -39.46590 -36.95268 -35.65949 -35.14311 -32.68591 -32.45527 -31.34171 -30.53566 -28.55059 -26.78099 -25.51210 -24.31440 -23.22412 -22.27834 -21.60926 -21.00457 -20.35116 -18.99033 -17.88153 -17.36220 -17.33714 -16.68420 -16.63827 -16.06860 -15.80333 -15.00395 -14.83849 -14.83380 -14.72163 -14.60563 -14.06299 -13.98327 -13.75109 -13.40895 -13.19445 -12.80317 -12.64714 -12.39630 -12.04180 -11.97897 -11.91911 -11.50828 -11.41581 -11.28677 -11.09184 -11.05451 -10.97505 -10.78715 -10.73368 -9.84308 -9.82304 -9.50085 -9.41048 -9.09992 -8.93222 -8.26829 -6.53186 -6.24655 -3.95313 0.30196 1.91418 1.92613 2.59330 2.65370 3.00902 3.06890 3.19763 3.25750 3.29940 3.63176 3.69356 4.17622 4.22162 4.27949 4.40660 4.55244 4.67104 4.88200 4.97739 5.04114 5.06018 5.10527 5.16310 5.16850 5.31828 5.39294 5.45614 5.56261 5.64259 5.65854 5.69700 5.75652 5.85136 5.87722 6.02066 6.10294 6.18520 6.65140 6.76910 7.04260 7.49412 7.56565 7.68903 8.32156 8.59417 9.20747 10.82710 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009673 B = 0.002060 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.935020 B =13586.732204 C =15932.490408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.088 0.912 4 C -0.121 4.121 5 C -0.135 4.135 6 C 0.118 3.882 7 N -0.716 5.716 8 C 0.609 3.391 9 O -0.516 6.516 10 C -0.113 4.113 11 C 0.054 3.946 12 N -0.496 5.496 13 C 0.205 3.795 14 O -0.191 6.191 15 N -0.735 5.735 16 C 0.533 3.467 17 O -0.517 6.517 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.408 0.592 38 H 0.198 0.802 39 H 0.258 0.742 40 H 0.396 0.604 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.027 -6.115 -24.218 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.106 0.894 4 C -0.160 4.160 5 C -0.173 4.173 6 C -0.005 4.005 7 N -0.367 5.367 8 C 0.393 3.607 9 O -0.394 6.394 10 C -0.168 4.168 11 C -0.089 4.089 12 N -0.224 5.224 13 C -0.019 4.019 14 O -0.076 6.076 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.244 0.756 38 H 0.214 0.786 39 H 0.274 0.726 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.595 -4.526 -24.878 25.898 hybrid contribution 0.679 -2.124 1.574 2.730 sum 6.274 -6.650 -23.304 25.033 Atomic orbital electron populations 1.22184 0.95328 1.02064 1.02700 1.20881 0.94022 0.97653 0.83650 0.89357 1.21793 0.94342 1.01733 0.98109 1.21843 0.96563 1.01624 0.97250 1.21530 0.78123 1.01659 0.99151 1.45940 1.08720 1.55919 1.26143 1.16327 0.82575 0.79380 0.82372 1.90915 1.66801 1.42832 1.38803 1.23192 0.92845 1.06298 0.94485 1.23648 0.86787 0.98889 0.99543 1.70490 1.23052 1.15181 1.13664 1.28516 0.85755 0.95844 0.91827 1.84519 1.18722 1.58598 1.45776 1.46129 1.69361 1.13818 1.09618 1.20297 0.76810 0.87235 0.83790 1.90700 1.48222 1.15824 1.84416 1.23539 1.03617 1.04856 0.98474 1.85393 1.86558 1.12864 0.98553 1.22862 1.51132 0.98145 0.96249 0.90966 1.24995 0.95085 0.95556 0.97972 1.70017 1.45495 1.13253 1.21500 0.86169 0.78980 0.80199 0.80165 1.20274 1.20733 1.19705 0.91628 0.91906 0.92568 0.90907 0.90014 0.90715 0.90584 0.90799 0.90815 0.75645 0.78551 0.72604 0.76982 0.89295 0.89371 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.48 37.16 0.35 -1.28 16 2 C 0.14 1.43 2.57 -67.93 -0.17 1.25 16 3 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 4 C -0.12 -0.78 4.75 -26.73 -0.13 -0.90 16 5 C -0.13 -0.86 5.22 -26.74 -0.14 -1.00 16 6 C 0.12 0.79 5.67 -4.04 -0.02 0.77 16 7 N -0.72 -5.28 5.55 -61.61 -0.34 -5.62 16 8 C 0.61 5.73 7.79 -12.83 -0.10 5.63 16 9 O -0.52 -6.27 16.89 5.20 0.09 -6.19 16 10 C -0.11 -0.96 7.18 -36.84 -0.26 -1.23 16 11 C 0.05 0.45 11.66 -17.42 -0.20 0.25 16 12 N -0.50 -4.09 11.26 -14.67 -0.17 -4.25 16 13 C 0.21 1.13 13.21 52.24 0.69 1.82 16 14 O -0.19 -1.36 10.57 4.44 0.05 -1.31 16 15 N -0.73 -8.65 4.53 -53.80 -0.24 -8.90 16 16 C 0.53 9.28 7.81 -10.98 -0.09 9.20 16 17 O -0.52 -11.17 15.53 5.55 0.09 -11.09 16 18 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 24 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.53 7.75 -51.92 -0.40 0.13 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.41 2.48 8.27 -40.82 -0.34 2.14 16 38 H 0.20 1.35 8.06 -52.49 -0.42 0.92 16 39 H 0.26 0.10 8.06 -52.49 -0.42 -0.32 16 40 H 0.40 3.59 8.60 -40.82 -0.35 3.24 16 41 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 42 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 391.35 15.07 5.90 5.90 Total: -1.00 -37.36 391.35 -6.89 -44.25 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.10 Total: 1.04 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 0.34 Total: -1.00 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: -0.02 Total: -43.89 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.22 Total: -18.58 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.36 -6.89 -44.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509963585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.399 kcal (2) G-P(sol) polarization free energy of solvation -37.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds