Wall clock time and date at job start Tue Mar 31 2020 23:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 C 1.52999 * 109.47338 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.47580 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00516 * 180.02562 * 7 6 5 9 9 O 1.21684 * 119.99747 * 359.97438 * 8 7 6 10 10 C 1.46725 * 120.00477 * 180.02562 * 8 7 6 11 11 C 1.36340 * 126.64294 * 179.97438 * 10 8 7 12 12 N 1.33699 * 107.44848 * 179.97438 * 11 10 8 13 13 C 1.30612 * 108.99512 * 0.02562 * 12 11 10 14 14 O 1.33659 * 109.15664 * 359.75094 * 13 12 11 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47012 * 89.99727 * 24 22 20 26 26 H 1.48501 * 109.47302 * 209.99797 * 24 22 20 27 27 H 1.48501 * 109.46788 * 330.00118 * 24 22 20 28 28 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 29 29 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 30 30 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 32 32 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 33 33 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 34 34 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 35 35 H 1.09003 * 109.47199 * 300.00414 * 6 5 4 36 36 H 1.09002 * 109.47200 * 60.00255 * 6 5 4 37 37 H 0.97009 * 120.00152 * 359.97438 * 7 6 5 38 38 H 1.07991 * 126.27582 * 359.97438 * 11 10 8 39 39 H 1.08001 * 125.42237 * 179.97438 * 13 12 11 40 40 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 41 41 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 42 42 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 43 43 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0748 -1.3347 -2.5629 7 7 5.5349 -1.2318 -2.6244 8 6 6.2079 -1.7968 -3.6462 9 8 5.6028 -2.3929 -4.5175 10 6 7.6703 -1.6943 -3.7075 11 6 8.4826 -2.2116 -4.6726 12 7 9.7405 -1.8921 -4.3515 13 6 9.7345 -1.2070 -3.2395 14 8 8.4737 -1.0634 -2.8196 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.2404 1.1182 7.7959 24 14 4.1282 -1.2762 8.8729 25 1 5.6125 -1.2380 8.8939 26 1 3.6027 -0.8253 10.1866 27 1 3.6725 -2.6643 8.6073 28 1 -0.3632 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2615 -2.1371 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4262 35 1 3.7865 -2.3849 -2.5190 36 1 3.6402 -0.8754 -3.4508 37 1 6.0173 -0.7562 -1.9300 38 1 8.1676 -2.7759 -5.5378 39 1 10.6088 -0.8155 -2.7407 40 1 2.2492 -1.6319 1.1524 41 1 1.9698 -1.5528 3.8298 42 1 3.6437 -1.1227 3.4038 43 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001509963585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:08 Heat of formation + Delta-G solvation = -94.256751 kcal Electronic energy + Delta-G solvation = -25628.323542 eV Core-core repulsion = 21606.934775 eV Total energy + Delta-G solvation = -4021.388767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.47019 -40.85317 -40.62289 -37.83771 -36.37367 -35.82357 -34.58079 -33.61626 -32.21139 -31.25730 -29.88934 -27.65347 -27.41006 -24.91450 -23.77172 -22.97963 -22.38400 -21.75853 -21.47837 -19.82616 -19.56951 -17.95113 -17.89406 -17.84115 -17.51389 -16.97366 -16.87274 -16.60750 -16.36785 -15.92193 -15.40586 -15.32206 -15.20003 -14.77698 -14.71389 -14.51289 -14.42588 -14.11174 -13.55536 -13.36441 -13.16446 -13.10308 -12.88887 -12.61589 -12.61160 -12.52290 -12.34869 -12.02721 -11.91209 -11.71220 -11.65865 -11.44043 -11.13976 -10.86587 -10.46808 -10.26069 -10.08284 -10.04484 -8.65539 -8.34379 -6.11957 -0.27053 1.28401 1.37688 1.38549 1.42323 1.48160 1.58459 1.67174 1.93550 2.09602 2.27072 2.36250 2.99729 3.25411 3.33684 3.60703 3.69606 3.84211 4.00691 4.02140 4.04639 4.27981 4.32267 4.40723 4.43943 4.51568 4.53392 4.59060 4.68883 4.72804 4.85515 4.90391 5.06187 5.14424 5.18568 5.21898 5.33638 5.38019 5.42173 5.62600 6.17657 6.20079 6.50256 6.58193 6.85498 7.07107 7.32226 8.74674 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009673 B = 0.002060 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.935020 B =13586.732204 C =15932.490408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.066 0.934 4 C -0.110 4.110 5 C -0.128 4.128 6 C 0.121 3.879 7 N -0.708 5.708 8 C 0.608 3.392 9 O -0.551 6.551 10 C -0.131 4.131 11 C 0.050 3.950 12 N -0.528 5.528 13 C 0.226 3.774 14 O -0.193 6.193 15 N -0.707 5.707 16 C 0.535 3.465 17 O -0.566 6.566 18 C -0.131 4.131 19 S -0.152 6.152 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.267 1.267 26 H -0.279 1.279 27 H -0.259 1.259 28 H 0.028 0.972 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.415 0.585 38 H 0.202 0.798 39 H 0.304 0.696 40 H 0.414 0.586 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.927 -8.126 -24.856 27.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.084 0.916 4 C -0.148 4.148 5 C -0.166 4.166 6 C -0.001 4.001 7 N -0.359 5.359 8 C 0.394 3.606 9 O -0.431 6.431 10 C -0.186 4.186 11 C -0.093 4.093 12 N -0.256 5.256 13 C 0.002 3.998 14 O -0.079 6.079 15 N -0.361 5.361 16 C 0.321 3.679 17 O -0.445 6.445 18 C -0.282 4.282 19 S 0.075 5.925 20 C -0.693 4.693 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.819 3.181 25 H -0.193 1.193 26 H -0.204 1.204 27 H -0.183 1.183 28 H 0.047 0.953 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.251 0.749 38 H 0.219 0.781 39 H 0.319 0.681 40 H 0.251 0.749 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.494 -6.575 -25.548 27.168 hybrid contribution 0.431 -1.489 1.654 2.267 sum 6.925 -8.064 -23.894 26.151 Atomic orbital electron populations 1.22156 0.94953 1.02872 1.01989 1.21054 0.94287 0.96979 0.84027 0.91585 1.21734 0.94090 1.02506 0.96509 1.21760 0.96603 1.01257 0.96934 1.21530 0.77647 1.01768 0.99189 1.45932 1.09113 1.55148 1.25672 1.16428 0.82966 0.79018 0.82227 1.90886 1.67615 1.44542 1.40090 1.23003 0.92707 1.07662 0.95251 1.23841 0.87122 0.98624 0.99704 1.70516 1.22977 1.16861 1.15279 1.29618 0.86134 0.93387 0.90646 1.84525 1.19237 1.58592 1.45577 1.45896 1.67339 1.14472 1.08426 1.20001 0.76685 0.86555 0.84683 1.90692 1.50707 1.17871 1.85203 1.23390 1.05508 1.03115 0.96188 1.85573 1.86944 1.17324 1.02636 1.23198 1.50937 0.98455 0.96724 0.89977 1.26121 0.95105 0.97205 1.00779 1.70184 1.46866 1.15498 1.22206 0.84966 0.78539 0.78200 0.76361 1.19254 1.20398 1.18254 0.95261 0.89754 0.90941 0.88965 0.88142 0.91203 0.90900 0.90618 0.90737 0.74865 0.78102 0.68080 0.74856 0.87542 0.87247 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.48 71.98 0.68 -2.26 16 2 C 0.14 2.56 2.57 44.99 0.12 2.68 16 3 H 0.07 1.56 7.58 -2.38 -0.02 1.54 16 4 C -0.11 -1.07 4.75 30.59 0.15 -0.92 16 5 C -0.13 -1.34 5.22 30.59 0.16 -1.18 16 6 C 0.12 1.38 5.67 86.38 0.49 1.88 16 7 N -0.71 -9.58 5.55 -467.05 -2.59 -12.18 16 8 C 0.61 11.15 7.79 86.46 0.67 11.83 16 9 O -0.55 -13.35 16.89 -4.30 -0.07 -13.43 16 10 C -0.13 -2.16 7.18 24.05 0.17 -1.98 16 11 C 0.05 0.82 11.66 83.97 0.98 1.80 16 12 N -0.53 -8.10 11.26 -315.11 -3.55 -11.65 16 13 C 0.23 1.99 13.21 130.42 1.72 3.71 16 14 O -0.19 -2.45 10.57 -7.01 -0.07 -2.53 16 15 N -0.71 -15.33 4.53 -442.52 -2.00 -17.33 16 16 C 0.54 18.41 7.81 87.66 0.68 19.09 16 17 O -0.57 -25.12 15.53 -3.04 -0.05 -25.17 16 18 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 19 S -0.15 -8.27 20.57 -56.49 -1.16 -9.43 16 20 C -0.55 -30.64 9.50 67.95 0.65 -29.99 16 21 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 22 C 0.01 0.71 5.49 84.86 0.47 1.18 16 23 N -0.91 -55.42 13.22 21.65 0.29 -55.14 16 24 Si 1.00 42.97 29.55 68.60 2.03 45.00 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 28 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.83 7.75 -2.38 -0.02 0.81 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.41 4.47 8.27 -92.70 -0.77 3.71 16 38 H 0.20 2.84 8.06 -2.92 -0.02 2.81 16 39 H 0.30 -0.87 8.06 -2.91 -0.02 -0.89 16 40 H 0.41 6.18 8.60 -92.71 -0.80 5.38 16 41 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 42 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 43 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -85.11 391.35 -0.33 -85.44 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -0.51 Total: 15.09 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 7.38 Total: 1.32 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -7.86 Total: -96.29 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -0.19 Total: -41.12 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal Total: -85.11 -0.33 -85.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509963585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.821 kcal (2) G-P(sol) polarization free energy of solvation -85.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds