Wall clock time and date at job start Tue Mar 31 2020 23:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36447 * 124.84723 * 2 1 4 4 C 1.34490 * 108.85132 * 180.02562 * 3 2 1 5 5 C 1.46688 * 106.33415 * 0.02562 * 4 3 2 6 6 C 1.47260 * 126.94114 * 179.97438 * 5 4 3 7 7 O 1.21625 * 120.00064 * 180.02562 * 6 5 4 8 8 N 1.34779 * 120.00308 * 0.02562 * 6 5 4 9 9 C 1.46494 * 120.00531 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47008 * 325.00296 * 9 8 6 11 11 C 1.53004 * 109.47171 * 84.99693 * 9 8 6 12 12 O 1.42898 * 109.46466 * 65.00228 * 11 9 8 13 13 C 1.52996 * 109.47509 * 205.00222 * 9 8 6 14 14 N 1.46498 * 109.47059 * 54.99655 * 13 9 8 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 9 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 S 1.81000 * 109.47389 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99715 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00516 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99710 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46661 * 60.00586 * 23 21 19 25 25 H 1.48501 * 109.47391 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47355 * 300.00441 * 23 21 19 27 27 C 1.34656 * 124.84914 * 180.33672 * 2 1 3 28 28 H 1.08993 * 109.47288 * 89.97128 * 1 2 3 29 29 H 1.09005 * 109.47029 * 209.97725 * 1 2 3 30 30 H 1.09005 * 109.47098 * 329.96900 * 1 2 3 31 31 H 1.07999 * 125.57525 * 0.04821 * 3 2 1 32 32 H 1.07999 * 126.83127 * 180.02562 * 4 3 2 33 33 H 0.97009 * 119.99558 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47343 * 185.00159 * 11 9 8 35 35 H 1.09004 * 109.46984 * 305.00700 * 11 9 8 36 36 H 0.96700 * 113.99771 * 180.02562 * 12 11 9 37 37 H 1.09004 * 109.47066 * 294.99922 * 13 9 8 38 38 H 1.08994 * 109.46974 * 175.00070 * 13 9 8 39 39 H 0.97001 * 120.00384 * 0.02562 * 14 13 9 40 40 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 41 41 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 42 42 H 0.96991 * 119.99795 * 179.97438 * 22 21 19 43 43 H 1.08000 * 125.80300 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7492 -0.0006 5 6 3.5462 -0.7177 -0.0016 6 6 4.7284 -1.5957 -0.0030 7 8 4.5885 -2.8039 -0.0042 8 7 5.9654 -1.0606 -0.0030 9 6 7.1414 -1.9341 -0.0038 10 1 6.9313 -2.8269 0.5851 11 6 7.4755 -2.3382 -1.4412 12 8 7.8639 -1.1805 -2.1833 13 6 8.3305 -1.1891 0.6060 14 7 7.9683 -0.6984 1.9380 15 6 8.8677 -0.0129 2.6712 16 8 9.9753 0.2022 2.2262 17 6 8.4972 0.4866 4.0439 18 16 9.9059 1.3629 4.7677 19 6 9.2137 1.8245 6.3209 20 1 8.1978 1.5491 6.5627 21 6 9.9745 2.5413 7.2341 22 7 11.2129 2.8766 6.9397 23 14 9.2405 3.0314 8.8805 24 1 8.8399 1.8115 9.6266 25 1 10.2495 3.7846 9.6678 26 1 8.0486 3.8881 8.6558 27 6 2.2345 -1.1051 -0.0065 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5143 31 1 1.8828 2.1373 0.0007 32 1 4.3981 1.4017 -0.0003 33 1 6.0769 -0.0969 -0.0016 34 1 8.2943 -3.0577 -1.4354 35 1 6.5984 -2.7897 -1.9049 36 1 8.0902 -1.3623 -3.1057 37 1 8.5970 -0.3461 -0.0317 38 1 9.1807 -1.8663 0.6871 39 1 7.0826 -0.8706 2.2941 40 1 7.6481 1.1656 3.9666 41 1 8.2298 -0.3587 4.6781 42 1 11.7443 3.3778 7.5777 43 1 1.8767 -2.1240 -0.0129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001510854424.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:59 Heat of formation + Delta-G solvation = -71.994302 kcal Electronic energy + Delta-G solvation = -26422.159019 eV Core-core repulsion = 22401.735625 eV Total energy + Delta-G solvation = -4020.423395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.52420 -39.87479 -38.85503 -37.32226 -35.34859 -33.59667 -33.04127 -32.39639 -30.65945 -29.46923 -28.94027 -26.94390 -25.66522 -25.20840 -23.26905 -21.26219 -20.37045 -20.26327 -19.93249 -18.36661 -17.77548 -17.69672 -16.62817 -16.26778 -16.06343 -15.80350 -15.28614 -15.08798 -14.96641 -14.77591 -14.54369 -14.25295 -13.91259 -13.68836 -13.62430 -13.41468 -13.10295 -12.92429 -12.79676 -12.66996 -12.54290 -12.33841 -12.13452 -11.73360 -11.43110 -11.01455 -11.01323 -10.74321 -10.34453 -10.00665 -9.79365 -9.38888 -9.25510 -9.03305 -8.91563 -8.83374 -8.63358 -8.20033 -6.46161 -6.18432 -3.88619 1.52238 2.13583 2.43009 3.02606 3.13739 3.19470 3.25713 3.29788 3.34109 3.41133 3.77309 4.02882 4.23636 4.27880 4.51433 4.58694 4.63320 4.64061 4.87942 4.89737 4.95754 5.11586 5.16460 5.17356 5.20398 5.26139 5.40034 5.58521 5.61105 5.70077 5.80900 5.93697 5.99968 6.19343 6.30747 6.43598 6.64828 6.69377 6.86526 7.36988 7.46191 7.62472 7.75319 8.18105 8.38311 8.66608 9.26696 10.88951 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009879 B = 0.002555 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.560618 B =10954.945173 C =13211.732758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.448 5.448 3 C -0.017 4.017 4 C -0.165 4.165 5 C -0.236 4.236 6 C 0.595 3.405 7 O -0.559 6.559 8 N -0.714 5.714 9 C 0.140 3.860 10 H 0.106 0.894 11 C 0.068 3.932 12 O -0.566 6.566 13 C 0.117 3.883 14 N -0.739 5.739 15 C 0.532 3.468 16 O -0.517 6.517 17 C -0.153 4.153 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.075 3.925 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.167 0.833 32 H 0.147 0.853 33 H 0.406 0.594 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.379 0.621 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.565 -8.241 -19.249 30.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.123 5.123 3 C -0.144 4.144 4 C -0.189 4.189 5 C -0.246 4.246 6 C 0.384 3.616 7 O -0.439 6.439 8 N -0.365 5.365 9 C 0.035 3.965 10 H 0.124 0.876 11 C -0.012 4.012 12 O -0.372 6.372 13 C -0.008 4.008 14 N -0.394 5.394 15 C 0.318 3.682 16 O -0.391 6.391 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.061 4.061 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.185 0.815 32 H 0.165 0.835 33 H 0.242 0.758 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.226 0.774 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -20.092 -8.316 -19.355 29.111 hybrid contribution -2.106 0.168 1.185 2.422 sum -22.198 -8.148 -18.170 29.821 Atomic orbital electron populations 1.22135 0.76822 1.04815 1.03557 1.43641 1.06838 1.05961 1.55904 1.21787 0.90589 0.91332 1.10643 1.22097 0.96355 0.93175 1.07258 1.20284 0.92417 0.93376 1.18559 1.17394 0.82355 0.86959 0.74860 1.90761 1.86682 1.14698 1.51714 1.45757 1.04600 1.10701 1.75491 1.21315 0.85032 0.95033 0.95165 0.87571 1.22529 0.99021 0.87806 0.91851 1.86493 1.90062 1.33572 1.27029 1.21485 0.95716 0.99722 0.83859 1.45996 1.17138 1.58704 1.17593 1.20287 0.84419 0.77007 0.86448 1.90707 1.21121 1.55545 1.71713 1.23530 1.07097 1.04235 0.95518 1.85381 1.13023 1.68130 1.16736 1.22834 1.01946 1.41522 1.02060 0.91005 1.24989 0.94729 0.95135 0.98733 1.70009 1.07777 1.36622 1.35923 0.86230 0.78721 0.78676 0.81898 1.19958 1.20836 1.19962 1.21769 0.89815 0.91750 1.02734 0.90634 0.89550 0.89462 0.81522 0.83513 0.75823 0.92383 0.92618 0.77392 0.89757 0.90282 0.76744 0.89244 0.89278 0.92157 0.80901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.20 11.03 59.85 0.66 0.86 16 2 N -0.45 -3.13 3.09 -124.52 -0.38 -3.52 16 3 C -0.02 -0.13 11.34 -16.82 -0.19 -0.32 16 4 C -0.16 -1.49 10.56 -37.50 -0.40 -1.89 16 5 C -0.24 -2.50 6.29 -103.35 -0.65 -3.15 16 6 C 0.59 7.12 7.77 -12.59 -0.10 7.02 16 7 O -0.56 -8.17 16.58 5.26 0.09 -8.08 16 8 N -0.71 -7.41 4.46 -54.94 -0.25 -7.65 16 9 C 0.14 1.44 2.53 -67.93 -0.17 1.27 16 10 H 0.11 1.14 7.58 -51.93 -0.39 0.74 16 11 C 0.07 0.60 6.85 37.16 0.25 0.85 16 12 O -0.57 -5.08 12.64 -35.23 -0.45 -5.53 16 13 C 0.12 1.43 5.12 -4.04 -0.02 1.41 16 14 N -0.74 -10.29 5.39 -60.30 -0.32 -10.62 16 15 C 0.53 10.14 7.85 -10.98 -0.09 10.06 16 16 O -0.52 -11.91 15.86 5.55 0.09 -11.83 16 17 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.41 9.50 30.94 0.29 -15.11 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 23 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 C 0.07 0.67 11.12 -16.84 -0.19 0.48 16 28 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.17 8.13 -51.93 -0.42 -0.26 16 30 H 0.09 0.15 8.13 -51.93 -0.42 -0.27 16 31 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.15 1.16 7.70 -52.49 -0.40 0.76 16 33 H 0.41 4.01 7.73 -40.82 -0.32 3.69 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.38 1.83 9.12 45.56 0.42 2.24 16 37 H 0.08 1.15 7.39 -51.93 -0.38 0.77 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.40 4.79 8.14 -40.82 -0.33 4.46 16 40 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 41 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 42 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -38.92 389.27 -7.51 -46.43 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.18 Total: 7.29 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -0.47 Total: 0.56 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.22 Total: -47.43 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.27 Total: -25.44 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.92 -7.51 -46.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510854424.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.563 kcal (2) G-P(sol) polarization free energy of solvation -38.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds