Wall clock time and date at job start Tue Mar 31 2020 23:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47160 * 2 1 4 4 C 1.34771 * 120.00344 * 275.33521 * 3 2 1 5 5 O 1.21694 * 120.00184 * 184.95523 * 4 3 2 6 6 C 1.46721 * 119.99989 * 4.95210 * 4 3 2 7 7 C 1.36346 * 126.64332 * 185.23904 * 6 4 3 8 8 N 1.33692 * 107.44974 * 179.97438 * 7 6 4 9 9 C 1.30614 * 108.99762 * 0.02562 * 8 7 6 10 10 O 1.33663 * 109.15314 * 359.72713 * 9 8 7 11 11 C 1.46502 * 119.99759 * 95.33417 * 3 2 1 12 12 H 1.09003 * 109.47582 * 179.97438 * 11 3 2 13 13 C 1.52998 * 109.47189 * 59.99841 * 11 3 2 14 14 C 1.53004 * 109.47283 * 300.00126 * 11 3 2 15 15 N 1.46505 * 109.46835 * 304.99741 * 14 11 3 16 16 C 1.34772 * 119.99778 * 179.97438 * 15 14 11 17 17 O 1.21284 * 120.00316 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99783 * 180.02562 * 16 15 14 19 19 S 1.81002 * 109.47196 * 180.02562 * 18 16 15 20 20 C 1.76196 * 100.00198 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99946 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00162 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00228 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99979 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46686 * 90.00112 * 24 22 20 26 26 H 1.48496 * 109.47676 * 210.00271 * 24 22 20 27 27 H 1.48501 * 109.47007 * 330.00631 * 24 22 20 28 28 H 1.09003 * 109.47269 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47159 * 299.99656 * 1 2 3 30 30 H 1.09002 * 109.46976 * 59.99959 * 1 2 3 31 31 H 1.09005 * 109.47227 * 240.00387 * 2 1 3 32 32 H 1.09002 * 109.46976 * 120.00041 * 2 1 3 33 33 H 1.08000 * 126.27399 * 0.03475 * 7 6 4 34 34 H 1.08006 * 125.42373 * 179.97438 * 9 8 7 35 35 H 1.08997 * 109.47504 * 300.00331 * 13 11 3 36 36 H 1.08998 * 109.47050 * 60.00071 * 13 11 3 37 37 H 1.09005 * 109.47406 * 180.02562 * 13 11 3 38 38 H 1.08997 * 109.47251 * 64.99724 * 14 11 3 39 39 H 1.08997 * 109.47066 * 185.00065 * 14 11 3 40 40 H 0.96999 * 119.99910 * 0.02562 * 15 14 11 41 41 H 1.09001 * 109.47636 * 300.00625 * 18 16 15 42 42 H 1.08997 * 109.47043 * 60.00834 * 18 16 15 43 43 H 0.96999 * 119.99923 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1407 2.0527 -1.1621 5 8 2.6305 3.1667 -1.1724 6 6 1.6834 1.4407 -2.4147 7 6 1.8305 1.9506 -3.6706 8 7 1.2765 1.0825 -4.5231 9 6 0.7992 0.0705 -3.8493 10 8 1.0388 0.2582 -2.5477 11 6 2.3737 2.0324 1.2633 12 1 2.7139 3.0489 1.0651 13 6 3.4934 1.2444 1.9460 14 6 1.1481 2.0737 2.1783 15 7 0.0376 2.7239 1.4780 16 6 -1.1522 2.8728 2.0933 17 8 -1.3035 2.4688 3.2269 18 6 -2.2946 3.5411 1.3728 19 16 -3.7445 3.5901 2.4553 20 6 -4.8937 4.3973 1.3912 21 1 -4.5926 4.6950 0.3976 22 6 -6.1856 4.6516 1.8302 23 7 -7.0440 5.2551 1.0354 24 14 -6.7063 4.1375 3.5489 25 1 -6.4309 5.2433 4.5010 26 1 -8.1589 3.8294 3.5548 27 1 -5.9427 2.9311 3.9573 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.3081 2.8840 -3.9294 34 1 0.2951 -0.7840 -4.2761 35 1 3.1537 0.2279 2.1442 36 1 4.3666 1.2150 1.2942 37 1 3.7576 1.7287 2.8861 38 1 0.8619 1.0572 2.4484 39 1 1.3874 2.6358 3.0810 40 1 0.1585 3.0466 0.5713 41 1 -2.0089 4.5577 1.1026 42 1 -2.5336 2.9788 0.4702 43 1 -7.9470 5.4325 1.3421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001512382415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:48 Heat of formation + Delta-G solvation = -36.483134 kcal Electronic energy + Delta-G solvation = -27946.596489 eV Core-core repulsion = 23927.712974 eV Total energy + Delta-G solvation = -4018.883515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.86195 -40.66972 -39.16914 -37.29103 -35.40915 -34.39607 -32.78536 -32.44542 -30.89923 -30.20222 -29.48625 -26.15556 -25.56679 -24.85374 -23.81867 -23.18497 -21.83303 -20.48048 -19.96313 -18.34581 -17.93380 -17.69515 -17.25196 -16.86726 -16.43794 -16.06091 -15.30614 -15.27533 -14.97355 -14.78938 -14.64692 -14.28905 -13.96527 -13.71908 -13.59141 -13.41887 -13.25442 -12.97331 -12.81128 -12.79856 -12.41427 -12.11138 -11.98542 -11.90806 -11.36893 -11.27926 -11.24062 -11.10622 -11.01971 -10.62225 -10.60344 -9.87447 -9.61096 -9.57137 -9.19410 -9.05296 -8.99313 -8.52027 -6.93175 -6.29585 -4.01598 0.40856 1.95214 2.04149 2.51323 2.65945 2.74485 2.93186 3.28215 3.32870 3.48833 3.62833 3.71481 4.08166 4.31965 4.36616 4.52621 4.52873 4.60753 4.73767 4.78874 4.94577 5.00339 5.06755 5.09362 5.14099 5.19721 5.21559 5.26087 5.45257 5.53340 5.55426 5.64399 5.72027 5.75067 5.77422 5.99607 6.04157 6.10218 6.44871 6.72278 7.12452 7.49723 7.54271 7.93472 8.41318 8.43470 9.16398 10.79737 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012911 B = 0.003063 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.162551 B = 9139.064474 C =10429.671580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.103 3.897 3 N -0.596 5.596 4 C 0.607 3.393 5 O -0.514 6.514 6 C -0.110 4.110 7 C 0.056 3.944 8 N -0.494 5.494 9 C 0.198 3.802 10 O -0.181 6.181 11 C 0.124 3.876 12 H 0.113 0.887 13 C -0.158 4.158 14 C 0.112 3.888 15 N -0.732 5.732 16 C 0.532 3.468 17 O -0.519 6.519 18 C -0.124 4.124 19 S -0.140 6.140 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.196 0.804 34 H 0.255 0.745 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.398 0.602 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.936 -13.945 -6.116 27.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.019 4.019 3 N -0.329 5.329 4 C 0.394 3.606 5 O -0.391 6.391 6 C -0.165 4.165 7 C -0.087 4.087 8 N -0.222 5.222 9 C -0.027 4.027 10 O -0.067 6.067 11 C 0.021 3.979 12 H 0.130 0.870 13 C -0.217 4.217 14 C -0.013 4.013 15 N -0.387 5.387 16 C 0.318 3.682 17 O -0.393 6.393 18 C -0.275 4.275 19 S 0.087 5.913 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.213 0.787 34 H 0.271 0.729 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.232 0.768 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 22.708 -13.961 -4.822 27.089 hybrid contribution -0.378 0.336 -0.642 0.817 sum 22.330 -13.625 -5.464 26.723 Atomic orbital electron populations 1.22363 0.94642 1.02902 1.03491 1.21740 0.95518 0.81231 1.03381 1.47980 1.64400 1.14741 1.05758 1.16490 0.78434 0.84546 0.81085 1.90922 1.44653 1.18330 1.85207 1.23040 1.07422 0.88316 0.97749 1.23646 0.98026 1.00074 0.86960 1.70488 1.13885 1.03003 1.34843 1.28507 0.97542 0.99669 0.76961 1.84758 1.57561 1.34311 1.30073 1.21502 0.94586 0.99294 0.82485 0.86956 1.22072 0.97637 1.00696 1.01253 1.21703 0.85494 0.99017 0.95131 1.45931 1.11524 1.62574 1.18667 1.20250 0.82815 0.78571 0.86554 1.90702 1.82356 1.48319 1.17952 1.23276 0.97402 1.03481 1.03345 1.84740 1.04607 1.79018 1.22967 1.22320 0.97945 1.43820 1.02885 0.89427 1.24709 0.95224 0.93514 0.97806 1.69939 1.05549 1.39856 1.36322 0.86736 0.79136 0.81591 0.84384 1.19190 1.19927 1.15946 0.91320 0.91071 0.92175 0.89877 0.89546 0.78671 0.72910 0.91719 0.91518 0.90456 0.90923 0.90077 0.76802 0.88550 0.88707 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.26 37.16 0.34 -1.16 16 2 C 0.10 0.71 4.98 -4.04 -0.02 0.69 16 3 N -0.60 -4.95 1.87 -167.62 -0.31 -5.26 16 4 C 0.61 6.22 7.31 -12.84 -0.09 6.13 16 5 O -0.51 -6.58 16.24 5.19 0.08 -6.50 16 6 C -0.11 -1.03 6.49 -36.84 -0.24 -1.27 16 7 C 0.06 0.53 11.67 -17.42 -0.20 0.33 16 8 N -0.49 -4.62 11.26 -14.67 -0.17 -4.79 16 9 C 0.20 1.26 13.21 52.24 0.69 1.95 16 10 O -0.18 -1.37 5.85 4.44 0.03 -1.34 16 11 C 0.12 0.99 2.79 -67.93 -0.19 0.80 16 12 H 0.11 1.04 6.91 -51.93 -0.36 0.68 16 13 C -0.16 -0.90 9.18 37.16 0.34 -0.56 16 14 C 0.11 1.12 4.33 -4.04 -0.02 1.10 16 15 N -0.73 -9.32 3.99 -60.29 -0.24 -9.56 16 16 C 0.53 9.27 7.61 -10.99 -0.08 9.19 16 17 O -0.52 -10.80 15.86 5.55 0.09 -10.71 16 18 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 19 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 20 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 21 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 22 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -26.67 13.97 55.49 0.78 -25.89 16 24 Si 0.86 21.77 27.74 -169.99 -4.71 17.06 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.78 4.96 -51.93 -0.26 0.52 16 30 H 0.06 0.58 6.34 -51.93 -0.33 0.25 16 31 H 0.08 0.52 5.93 -51.93 -0.31 0.21 16 32 H 0.09 0.47 6.44 -51.93 -0.33 0.14 16 33 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.26 0.37 8.06 -52.48 -0.42 -0.05 16 35 H 0.06 0.32 6.67 -51.93 -0.35 -0.03 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.74 7.02 -51.93 -0.36 0.37 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.40 4.77 7.87 -40.82 -0.32 4.45 16 41 H 0.10 1.81 8.14 -51.91 -0.42 1.39 16 42 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 43 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 368.24 15.07 5.55 5.55 Total: -1.00 -36.34 368.24 -5.52 -41.86 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.58 Total: 2.21 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 0.96 Total: 2.90 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.06 Total: -45.50 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.20 Total: -18.55 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.34 -5.52 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001512382415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.379 kcal (2) G-P(sol) polarization free energy of solvation -36.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds