Wall clock time and date at job start Tue Mar 31 2020 23:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47006 * 2 1 4 4 C 1.34772 * 120.00410 * 269.99841 * 3 2 1 5 5 O 1.21281 * 120.00471 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.99805 * 0.02562 * 4 3 2 7 7 S 1.81000 * 109.47105 * 179.97438 * 6 4 3 8 8 C 1.76202 * 100.00059 * 179.97438 * 7 6 4 9 9 H 1.08000 * 119.99972 * 0.02562 * 8 7 6 10 10 C 1.38798 * 120.00100 * 179.97438 * 8 7 6 11 11 N 1.31625 * 120.00030 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00000 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46743 * 60.00325 * 12 10 8 14 14 H 1.48495 * 109.46779 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47144 * 300.00241 * 12 10 8 16 16 C 1.46504 * 119.99653 * 90.00294 * 3 2 1 17 17 H 1.09009 * 109.46872 * 179.97438 * 16 3 2 18 18 C 1.53004 * 109.47432 * 60.00120 * 16 3 2 19 19 C 1.52997 * 109.46947 * 299.99595 * 16 3 2 20 20 N 1.46496 * 109.47293 * 305.00074 * 19 16 3 21 21 C 1.34777 * 119.99967 * 180.02562 * 20 19 16 22 22 O 1.21606 * 120.00196 * 359.97438 * 21 20 19 23 23 C 1.47424 * 119.99772 * 180.02562 * 21 20 19 24 24 C 1.36096 * 126.44322 * 179.97438 * 23 21 20 25 25 O 1.34261 * 106.94281 * 180.02562 * 24 23 21 26 26 C 1.34050 * 108.22996 * 0.02562 * 25 24 23 27 27 N 1.29933 * 109.24333 * 0.26514 * 26 25 24 28 28 H 1.08999 * 109.47305 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47295 * 300.00107 * 1 2 3 30 30 H 1.09001 * 109.47044 * 59.99666 * 1 2 3 31 31 H 1.09003 * 109.47111 * 240.00340 * 2 1 3 32 32 H 1.09001 * 109.47044 * 120.00334 * 2 1 3 33 33 H 1.09008 * 109.47135 * 299.99456 * 6 4 3 34 34 H 1.08996 * 109.47152 * 59.99776 * 6 4 3 35 35 H 0.96998 * 120.00400 * 180.02562 * 11 10 8 36 36 H 1.08995 * 109.47145 * 59.99655 * 18 16 3 37 37 H 1.08991 * 109.47136 * 180.02562 * 18 16 3 38 38 H 1.09004 * 109.46275 * 299.99895 * 18 16 3 39 39 H 1.09006 * 109.46830 * 185.00071 * 19 16 3 40 40 H 1.09001 * 109.47034 * 65.00419 * 19 16 3 41 41 H 0.96999 * 120.00114 * 359.97438 * 20 19 16 42 42 H 1.07993 * 126.52884 * 359.96944 * 24 23 21 43 43 H 1.08002 * 125.37508 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1671 5 8 2.6468 3.1602 -1.1671 6 6 1.9913 1.3064 -2.4722 7 16 2.3828 2.4156 -3.8479 8 6 2.0097 1.3596 -5.2082 9 1 1.6546 0.3552 -5.0305 10 6 2.1711 1.8188 -6.5080 11 7 2.6034 3.0430 -6.7245 12 14 1.7762 0.6989 -7.9501 13 1 0.3485 0.2954 -7.8868 14 1 2.0311 1.4215 -9.2221 15 1 2.6356 -0.5104 -7.8875 16 6 2.2625 2.0718 1.2688 17 1 2.6201 3.0821 1.0696 18 6 3.3172 1.3069 2.0711 19 6 0.9615 2.1397 2.0711 20 7 -0.0824 2.7663 1.2564 21 6 -1.3212 2.9335 1.7605 22 8 -1.5724 2.5637 2.8914 23 6 -2.3718 3.5636 0.9405 24 6 -3.6595 3.7953 1.3151 25 8 -4.2704 4.3823 0.2735 26 6 -3.3784 4.5081 -0.7193 27 7 -2.2385 4.0165 -0.3356 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.6213 0.4187 -2.5302 34 1 0.9433 1.0126 -2.5298 35 1 2.7159 3.3641 -7.6329 36 1 4.2439 1.2585 1.4995 37 1 3.4985 1.8204 3.0152 38 1 2.9598 0.2965 2.2702 39 1 1.1215 2.7299 2.9734 40 1 0.6514 1.1316 2.3464 41 1 0.1180 3.0617 0.3545 42 1 -4.1054 3.5524 2.2682 43 1 -3.5773 4.9446 -1.6869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001512389342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:09 Heat of formation + Delta-G solvation = -42.631896 kcal Electronic energy + Delta-G solvation = -27883.345863 eV Core-core repulsion = 23864.195718 eV Total energy + Delta-G solvation = -4019.150145 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.62029 -40.33609 -39.24135 -36.68431 -35.07713 -34.44224 -32.60488 -32.42959 -30.62807 -30.01484 -28.65062 -26.98099 -25.48569 -23.95037 -23.40825 -22.87996 -21.67768 -20.68817 -19.17108 -18.54645 -17.77134 -17.09364 -16.92429 -16.77217 -16.42587 -15.69632 -15.27296 -15.11359 -15.02639 -14.80586 -14.23436 -14.11741 -13.77458 -13.72945 -13.41656 -13.29054 -13.15626 -12.86885 -12.58032 -12.41221 -12.11877 -11.97362 -11.67736 -11.56733 -11.05892 -11.04018 -11.00029 -10.97452 -10.93885 -10.75904 -10.40063 -9.81451 -9.48339 -9.38815 -9.14242 -9.05949 -8.64409 -8.22447 -6.49213 -6.21567 -3.91717 0.89073 1.86642 2.45423 2.82158 2.99842 3.01389 3.15024 3.22710 3.24931 3.28301 3.58596 3.86413 4.20279 4.47277 4.59275 4.61737 4.83898 4.89074 5.01238 5.07712 5.13398 5.25401 5.29318 5.30468 5.34837 5.38328 5.43792 5.48039 5.55661 5.73938 5.79685 5.85967 5.90495 5.92070 5.99786 6.09519 6.23096 6.27908 6.65019 7.14747 7.44478 7.49309 7.59232 7.98596 8.34883 8.51273 9.23734 10.85737 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009923 B = 0.003579 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.990433 B = 7820.523988 C = 9669.907172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.106 3.894 3 N -0.616 5.616 4 C 0.535 3.465 5 O -0.514 6.514 6 C -0.150 4.150 7 S -0.059 6.059 8 C -0.535 4.535 9 H 0.071 0.929 10 C 0.075 3.925 11 N -0.868 5.868 12 Si 0.917 3.083 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.274 1.274 16 C 0.123 3.877 17 H 0.110 0.890 18 C -0.157 4.157 19 C 0.109 3.891 20 N -0.702 5.702 21 C 0.603 3.397 22 O -0.545 6.545 23 C -0.076 4.076 24 C 0.012 3.988 25 O -0.201 6.201 26 C 0.184 3.816 27 N -0.459 5.459 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.269 0.731 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.416 0.584 42 H 0.229 0.771 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.267 -3.029 18.245 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.017 4.017 3 N -0.352 5.352 4 C 0.323 3.677 5 O -0.388 6.388 6 C -0.300 4.300 7 S 0.168 5.832 8 C -0.683 4.683 9 H 0.089 0.911 10 C -0.134 4.134 11 N -0.503 5.503 12 Si 0.743 3.257 13 H -0.200 1.200 14 H -0.208 1.208 15 H -0.200 1.200 16 C 0.019 3.981 17 H 0.128 0.872 18 C -0.215 4.215 19 C -0.015 4.015 20 N -0.354 5.354 21 C 0.388 3.612 22 O -0.423 6.423 23 C -0.196 4.196 24 C -0.063 4.063 25 O -0.086 6.086 26 C -0.044 4.044 27 N -0.188 5.188 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.253 0.747 42 H 0.245 0.755 43 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -8.214 -1.476 18.524 20.317 hybrid contribution -1.270 -1.972 -1.124 2.601 sum -9.483 -3.448 17.399 20.114 Atomic orbital electron populations 1.22411 0.96002 1.02141 1.03177 1.21510 0.94397 0.82535 1.03260 1.48091 1.67658 1.14397 1.05084 1.20396 0.76183 0.86496 0.84632 1.90703 1.43992 1.17453 1.86701 1.23574 1.04763 1.04494 0.97183 1.85377 1.86800 1.17796 0.93223 1.22814 1.51814 1.01433 0.92267 0.91087 1.24964 0.94674 0.95499 0.98301 1.70004 1.42944 1.15610 1.21722 0.86256 0.78946 0.80091 0.80397 1.19967 1.20816 1.19961 1.21275 0.93743 0.99312 0.83790 0.87227 1.22053 0.98813 1.00522 1.00149 1.21869 0.86790 0.98843 0.94022 1.45794 1.09527 1.60613 1.19445 1.16729 0.81426 0.78039 0.84964 1.90808 1.81649 1.51632 1.18204 1.21802 0.95480 1.09116 0.93167 1.25258 0.92159 0.96424 0.92439 1.84457 1.41961 1.60264 1.21927 1.28273 0.81772 0.99759 0.94639 1.70885 1.25254 1.12688 1.09930 0.91874 0.91812 0.92051 0.89884 0.90451 0.89377 0.89244 0.92162 0.91308 0.91163 0.92001 0.90289 0.90644 0.74685 0.75499 0.72673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 9.65 37.16 0.36 -1.59 16 2 C 0.11 1.13 5.38 -4.04 -0.02 1.11 16 3 N -0.62 -8.09 1.88 -166.10 -0.31 -8.40 16 4 C 0.53 9.65 7.40 -10.99 -0.08 9.56 16 5 O -0.51 -11.13 15.19 5.56 0.08 -11.04 16 6 C -0.15 -2.98 4.71 36.01 0.17 -2.81 16 7 S -0.06 -1.56 20.57 -107.50 -2.21 -3.78 16 8 C -0.54 -15.04 9.50 30.94 0.29 -14.75 16 9 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 10 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 11 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 12 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 13 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 C 0.12 1.39 2.80 -67.93 -0.19 1.20 16 17 H 0.11 1.47 6.90 -51.92 -0.36 1.11 16 18 C -0.16 -1.35 9.17 37.16 0.34 -1.01 16 19 C 0.11 1.17 4.30 -4.05 -0.02 1.15 16 20 N -0.70 -9.03 3.99 -61.38 -0.24 -9.27 16 21 C 0.60 8.13 7.55 -12.52 -0.09 8.03 16 22 O -0.54 -8.09 16.89 5.27 0.09 -8.00 16 23 C -0.08 -0.95 6.99 -83.02 -0.58 -1.53 16 24 C 0.01 0.11 11.95 29.96 0.36 0.47 16 25 O -0.20 -1.84 10.73 6.50 0.07 -1.77 16 26 C 0.18 1.74 13.19 51.96 0.69 2.43 16 27 N -0.46 -6.01 11.06 -11.48 -0.13 -6.14 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.73 4.50 -51.93 -0.23 0.49 16 30 H 0.06 0.79 7.22 -51.93 -0.37 0.42 16 31 H 0.08 0.91 6.44 -51.93 -0.33 0.58 16 32 H 0.08 0.64 6.43 -51.93 -0.33 0.31 16 33 H 0.09 1.64 7.40 -51.91 -0.38 1.25 16 34 H 0.09 1.69 7.18 -51.92 -0.37 1.32 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.46 6.66 -51.93 -0.35 0.11 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.77 6.62 -51.93 -0.34 0.42 16 41 H 0.42 6.12 7.60 -40.82 -0.31 5.81 16 42 H 0.23 1.47 8.06 -52.49 -0.42 1.04 16 43 H 0.26 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -36.19 374.24 -5.65 -41.84 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.47 Total: 5.61 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 1.12 Total: 4.28 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.05 Total: -48.95 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: 0.24 Total: -20.82 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.19 -5.65 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001512389342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.792 kcal (2) G-P(sol) polarization free energy of solvation -36.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds