Wall clock time and date at job start Tue Mar 31 2020 23:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46650 * 2 1 4 4 C 1.52995 * 109.47190 * 240.00075 * 2 1 3 5 5 N 1.46498 * 109.47613 * 64.99938 * 4 2 1 6 6 C 1.34772 * 120.00438 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99722 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00338 * 179.97438 * 6 5 4 9 9 S 1.80994 * 109.47359 * 179.97438 * 8 6 5 10 10 C 1.76192 * 100.00093 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00142 * 359.97438 * 10 9 8 12 12 C 1.38796 * 120.00298 * 179.97438 * 10 9 8 13 13 N 1.31638 * 119.99740 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00297 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47177 * 90.00089 * 14 12 10 16 16 H 1.48505 * 109.47060 * 209.99932 * 14 12 10 17 17 H 1.48501 * 109.47017 * 330.00210 * 14 12 10 18 18 C 1.52999 * 109.47007 * 119.99491 * 2 1 3 19 19 N 1.46492 * 109.47623 * 295.00368 * 18 2 1 20 20 C 1.34778 * 120.00556 * 180.02562 * 19 18 2 21 21 O 1.21284 * 119.99600 * 359.97438 * 20 19 18 22 22 C 1.50697 * 120.00291 * 180.02562 * 20 19 18 23 23 C 1.50702 * 109.46965 * 179.97438 * 22 20 19 24 24 C 1.41385 * 128.00459 * 90.00055 * 23 22 20 25 25 N 1.30179 * 106.39389 * 179.97438 * 24 23 22 26 26 O 1.20927 * 111.60367 * 359.97438 * 25 24 23 27 27 C 1.34037 * 111.56699 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.46650 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47225 * 300.00001 * 1 2 3 30 30 H 1.08998 * 109.47131 * 60.00664 * 1 2 3 31 31 H 1.09009 * 109.47106 * 185.00090 * 4 2 1 32 32 H 1.09003 * 109.47102 * 304.99336 * 4 2 1 33 33 H 0.97003 * 119.99581 * 359.97438 * 5 4 2 34 34 H 1.09002 * 109.46542 * 300.00225 * 8 6 5 35 35 H 1.09001 * 109.46569 * 59.99644 * 8 6 5 36 36 H 0.97001 * 120.00015 * 179.97438 * 13 12 10 37 37 H 1.09005 * 109.46733 * 175.00270 * 18 2 1 38 38 H 1.08998 * 109.47143 * 55.00924 * 18 2 1 39 39 H 0.97010 * 119.99963 * 359.97438 * 19 18 2 40 40 H 1.08997 * 109.47662 * 59.99660 * 22 20 19 41 41 H 1.08998 * 109.46934 * 299.99061 * 22 20 19 42 42 H 1.07993 * 126.80227 * 359.70041 * 24 23 22 43 43 H 1.08002 * 126.77549 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6525 0.0353 -2.4424 6 6 1.9957 -0.4136 -3.6659 7 8 2.6257 -1.4437 -3.7792 8 6 1.5965 0.3643 -4.8934 9 16 2.2000 -0.4888 -6.3712 10 6 1.6093 0.6058 -7.6191 11 1 1.0560 1.4912 -7.3430 12 6 1.8551 0.3303 -8.9570 13 7 2.5292 -0.7492 -9.2936 14 14 1.2295 1.4912 -10.2800 15 1 2.2596 2.5235 -10.5602 16 1 0.9483 0.7233 -11.5197 17 1 -0.0166 2.1495 -9.8120 18 6 2.0400 -0.7211 1.2493 19 7 1.6524 0.0354 2.4424 20 6 1.9964 -0.4129 3.6660 21 8 2.6265 -1.4430 3.7793 22 6 1.5972 0.3651 4.8933 23 6 2.0996 -0.3452 6.1238 24 6 3.3416 -0.1791 6.7787 25 7 3.3353 -0.9972 7.7913 26 8 2.3019 -1.6223 7.8522 27 6 1.4652 -1.2891 6.8595 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 3.1264 -0.7994 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 1.1483 0.8590 -2.3518 34 1 0.5102 0.4424 -4.9366 35 1 2.0311 1.3629 -4.8478 36 1 2.7006 -0.9420 -10.2287 37 1 3.1264 -0.7993 1.2056 38 1 1.6055 -1.7197 1.2952 39 1 1.1488 0.8596 2.3517 40 1 0.5108 0.4425 4.9370 41 1 2.0311 1.3639 4.8474 42 1 4.1393 0.4903 6.4928 43 1 0.4800 -1.6939 6.6809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001532114519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:03 Heat of formation + Delta-G solvation = -22.857796 kcal Electronic energy + Delta-G solvation = -25226.631209 eV Core-core repulsion = 21208.338533 eV Total energy + Delta-G solvation = -4018.292676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.34851 -40.27014 -39.31129 -37.22171 -35.07692 -34.61060 -32.71554 -32.45263 -32.34231 -29.75184 -29.24441 -27.12888 -25.67887 -25.22077 -23.41983 -22.35764 -21.14743 -20.64254 -20.38943 -18.39547 -18.08648 -17.85825 -17.31023 -16.85717 -16.28410 -16.21403 -15.71684 -15.57374 -15.13624 -14.82613 -14.79334 -14.24206 -13.98712 -13.85333 -13.74507 -13.54379 -13.19048 -13.11169 -12.96361 -12.61751 -12.56904 -11.97272 -11.69378 -11.63841 -11.44328 -11.30535 -11.08396 -11.04731 -10.82365 -10.78499 -10.42205 -9.86134 -9.83571 -9.55488 -9.45638 -9.09403 -8.94714 -8.26143 -6.52580 -6.23812 -3.94703 1.06158 1.76723 2.15546 2.64748 2.84688 3.04522 3.05754 3.20445 3.26418 3.30357 3.67836 3.80456 4.16953 4.18148 4.19224 4.29628 4.36972 4.45670 4.47547 4.63477 4.79354 4.96637 5.08785 5.09852 5.11411 5.18582 5.23292 5.29100 5.38403 5.48725 5.54934 5.58000 5.62793 5.81438 5.84296 5.86312 5.94662 6.09722 6.53960 6.96652 7.57074 7.63831 7.73618 7.82392 8.32772 8.56621 9.21452 10.83603 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.048139 B = 0.001344 C = 0.001328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.514160 B =20828.663885 C =21085.964941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.128 3.872 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.126 3.874 19 N -0.728 5.728 20 C 0.510 3.490 21 O -0.529 6.529 22 C -0.063 4.063 23 C -0.189 4.189 24 C 0.004 3.996 25 N -0.365 5.365 26 O 0.098 5.902 27 C -0.042 4.042 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.397 0.603 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.401 0.599 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.189 0.811 43 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.287 6.862 31.569 33.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 H 0.103 0.897 4 C 0.003 3.997 5 N -0.393 5.393 6 C 0.317 3.683 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.685 4.685 11 H 0.091 0.909 12 C -0.135 4.135 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 C 0.002 3.998 19 N -0.381 5.381 20 C 0.296 3.704 21 O -0.404 6.404 22 C -0.103 4.103 23 C -0.193 4.193 24 C -0.175 4.175 25 N -0.069 5.069 26 O 0.033 5.967 27 C -0.124 4.124 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.231 0.769 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.236 0.764 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.206 0.794 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -4.800 3.944 32.291 32.883 hybrid contribution -2.010 3.141 -1.589 4.053 sum -6.810 7.085 30.702 32.236 Atomic orbital electron populations 1.21896 0.93971 1.02903 1.01980 1.21594 0.97121 1.00734 0.93915 0.89689 1.21165 1.00319 0.95427 0.82760 1.45963 1.59767 1.28128 1.05469 1.20316 0.78698 0.85496 0.83774 1.90715 1.38266 1.23832 1.86164 1.23528 1.04781 1.03449 0.98641 1.85425 1.72748 1.33015 0.92149 1.22863 1.41508 1.11319 0.92795 0.90934 1.24991 0.94847 0.95773 0.97931 1.70020 1.37453 1.24556 1.18211 0.86169 0.79078 0.80070 0.80179 1.20266 1.20730 1.19710 1.21311 1.00626 0.95396 0.82472 1.45964 1.58358 1.28033 1.05763 1.20521 0.79643 0.85884 0.84353 1.90774 1.38931 1.24188 1.86532 1.19876 1.03107 0.99216 0.88117 1.20700 0.95809 1.02629 1.00183 1.24925 0.98847 1.00600 0.93116 1.73885 1.03562 1.08119 1.21298 1.84828 1.19529 1.49718 1.42581 1.25786 0.98791 0.97881 0.89965 0.91909 0.92535 0.91839 0.91249 0.91167 0.76857 0.89237 0.89243 0.92156 0.90849 0.90782 0.76413 0.87281 0.87213 0.79441 0.76811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 8.94 37.16 0.33 -0.42 16 2 C -0.11 -0.67 2.46 -90.62 -0.22 -0.89 16 3 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 4 C 0.13 1.28 5.06 -4.05 -0.02 1.26 16 5 N -0.74 -8.74 5.28 -60.29 -0.32 -9.06 16 6 C 0.53 9.46 7.85 -10.99 -0.09 9.37 16 7 O -0.52 -11.47 15.86 5.56 0.09 -11.39 16 8 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 11 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 14 Si 0.92 21.12 29.55 -169.99 -5.02 16.09 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 C 0.13 0.83 5.06 -4.05 -0.02 0.81 16 19 N -0.73 -3.42 5.28 -60.30 -0.32 -3.74 16 20 C 0.51 3.43 7.82 -10.99 -0.09 3.35 16 21 O -0.53 -6.27 16.03 5.55 0.09 -6.18 16 22 C -0.06 -0.20 6.28 -29.04 -0.18 -0.38 16 23 C -0.19 -1.15 4.82 -104.42 -0.50 -1.65 16 24 C 0.00 0.03 12.16 -17.06 -0.21 -0.17 16 25 N -0.37 -3.59 12.07 30.36 0.37 -3.22 16 26 O 0.10 0.83 11.20 17.18 0.19 1.02 16 27 C -0.04 -0.24 12.26 29.74 0.36 0.13 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.18 7.18 -51.93 -0.37 -0.19 16 30 H 0.06 0.34 7.18 -51.93 -0.37 -0.03 16 31 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.40 3.46 7.65 -40.82 -0.31 3.14 16 34 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 35 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.40 0.68 7.66 -40.82 -0.31 0.37 16 40 H 0.11 0.05 8.14 -51.93 -0.42 -0.37 16 41 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 42 H 0.19 1.01 8.06 -52.49 -0.42 0.58 16 43 H 0.22 0.36 8.06 -52.49 -0.42 -0.07 16 LS Contribution 387.60 15.07 5.84 5.84 Total: -1.00 -39.46 387.60 -6.76 -46.22 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.99 Total: -2.39 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -0.21 Total: -4.17 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.46 Total: -41.24 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.37 Total: -16.55 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.46 -6.76 -46.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532114519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.363 kcal (2) G-P(sol) polarization free energy of solvation -39.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds