Wall clock time and date at job start Tue Mar 31 2020 23:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46852 * 2 1 4 4 C 1.53000 * 109.47129 * 119.99800 * 2 1 3 5 5 N 1.46500 * 109.47014 * 295.00263 * 4 2 1 6 6 C 1.34778 * 119.99409 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00700 * 359.97438 * 6 5 4 8 8 C 1.50708 * 119.99448 * 179.97438 * 6 5 4 9 9 S 1.80999 * 109.46806 * 179.97438 * 8 6 5 10 10 C 1.76195 * 100.00134 * 179.97438 * 9 8 6 11 11 H 1.08010 * 119.99787 * 359.97438 * 10 9 8 12 12 C 1.38799 * 120.00255 * 180.02562 * 10 9 8 13 13 N 1.31624 * 120.00159 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99761 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47021 * 60.00440 * 14 12 10 16 16 H 1.48500 * 109.46894 * 179.97438 * 14 12 10 17 17 H 1.48488 * 109.47545 * 300.00087 * 14 12 10 18 18 C 1.52999 * 109.47043 * 240.00270 * 2 1 3 19 19 N 1.46492 * 109.47623 * 64.99919 * 18 2 1 20 20 C 1.34778 * 120.00556 * 180.02562 * 19 18 2 21 21 O 1.21284 * 119.99600 * 359.97438 * 20 19 18 22 22 C 1.50697 * 120.00291 * 180.02562 * 20 19 18 23 23 C 1.50702 * 109.46965 * 179.97438 * 22 20 19 24 24 C 1.41385 * 128.00459 * 90.00055 * 23 22 20 25 25 N 1.30179 * 106.39389 * 179.97438 * 24 23 22 26 26 O 1.20927 * 111.60367 * 359.97438 * 25 24 23 27 27 C 1.34037 * 111.56699 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47077 * 300.00234 * 1 2 3 29 29 H 1.09002 * 109.47147 * 59.99850 * 1 2 3 30 30 H 1.09000 * 109.47250 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46981 * 55.00304 * 4 2 1 32 32 H 1.09002 * 109.46927 * 174.99687 * 4 2 1 33 33 H 0.96994 * 120.00397 * 359.97438 * 5 4 2 34 34 H 1.08999 * 109.47047 * 299.99306 * 8 6 5 35 35 H 1.08997 * 109.46858 * 60.00025 * 8 6 5 36 36 H 0.97002 * 120.00306 * 179.97438 * 13 12 10 37 37 H 1.09005 * 109.46733 * 304.99822 * 18 2 1 38 38 H 1.08998 * 109.47143 * 185.00476 * 18 2 1 39 39 H 0.97010 * 119.99963 * 359.97438 * 19 18 2 40 40 H 1.08997 * 109.47662 * 59.99660 * 22 20 19 41 41 H 1.08998 * 109.46934 * 299.99061 * 22 20 19 42 42 H 1.07993 * 126.80227 * 359.70041 * 24 23 22 43 43 H 1.08002 * 126.77549 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 0.0354 2.4424 6 6 1.9964 -0.4131 3.6659 7 8 2.6265 -1.4431 3.7793 8 6 1.5982 0.3656 4.8932 9 16 2.2014 -0.4877 6.3711 10 6 1.6133 0.6085 7.6188 11 1 1.0618 1.4951 7.3425 12 6 1.8596 0.3332 8.9568 13 7 2.5330 -0.7464 9.2935 14 14 1.2367 1.4959 10.2795 15 1 -0.2432 1.5897 10.1992 16 1 1.6275 0.9800 11.6161 17 1 1.8298 2.8417 10.0751 18 6 2.0400 -0.7212 -1.2493 19 7 1.6525 0.0353 -2.4424 20 6 1.9956 -0.4136 -3.6660 21 8 2.6256 -1.4437 -3.7793 22 6 1.5974 0.3650 -4.8933 23 6 2.0997 -0.3455 -6.1237 24 6 1.4376 -1.3315 -6.8908 25 7 2.2505 -1.6540 -7.8551 26 8 3.2837 -1.0285 -7.7944 27 6 3.2889 -0.1858 -6.7520 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6054 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 1.1488 0.8594 2.3517 34 1 2.0329 1.3641 4.8469 35 1 0.5119 0.4438 4.9372 36 1 2.7055 -0.9386 10.2285 37 1 1.6053 -1.7198 -1.2951 38 1 3.1263 -0.7995 -1.2056 39 1 1.1482 0.8591 -2.3518 40 1 2.0327 1.3632 -4.8475 41 1 0.5112 0.4439 -4.9369 42 1 0.4544 -1.7398 -6.7098 43 1 4.0847 0.4871 -6.4686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001532114521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:05 Heat of formation + Delta-G solvation = -53.554784 kcal Electronic energy + Delta-G solvation = -25227.820729 eV Core-core repulsion = 21208.196932 eV Total energy + Delta-G solvation = -4019.623797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.87392 -40.90443 -40.52457 -38.01003 -35.63772 -35.42193 -34.57210 -33.45705 -33.00111 -30.89848 -29.89640 -27.80373 -27.56245 -26.18996 -23.94284 -22.87438 -21.84628 -21.60760 -21.16285 -19.80595 -18.86806 -18.58753 -17.98509 -17.66950 -17.50775 -16.86918 -16.84405 -16.68335 -16.48925 -15.92103 -15.63802 -15.52698 -14.83169 -14.73338 -14.50707 -14.33549 -14.15822 -13.99169 -13.82120 -13.63295 -13.33599 -13.15640 -12.96450 -12.84983 -12.62803 -12.19532 -12.14677 -12.10067 -11.84074 -11.72918 -11.37986 -11.11552 -11.04440 -10.93423 -10.30928 -10.25838 -10.12567 -10.06541 -8.65725 -8.33152 -6.11564 0.61160 1.25819 1.29115 1.45191 1.48510 1.57724 1.63082 1.68481 2.13686 2.28967 2.40664 2.52840 3.01129 3.33794 3.39217 3.70674 3.79910 3.82235 3.86951 3.88873 4.04076 4.11424 4.28458 4.32338 4.43003 4.51994 4.53176 4.64529 4.77775 4.78822 4.79501 4.83874 4.91367 4.99778 5.14854 5.20737 5.35154 5.42760 5.46277 5.48201 6.20762 6.52424 6.60721 7.08070 7.27101 7.32177 7.32656 8.75775 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.048155 B = 0.001344 C = 0.001328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.312552 B =20829.159440 C =21086.181292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 H 0.111 0.889 4 C 0.124 3.876 5 N -0.707 5.707 6 C 0.532 3.468 7 O -0.569 6.569 8 C -0.128 4.128 9 S -0.157 6.157 10 C -0.547 4.547 11 H 0.085 0.915 12 C 0.014 3.986 13 N -0.912 5.912 14 Si 0.998 3.002 15 H -0.261 1.261 16 H -0.281 1.281 17 H -0.261 1.261 18 C 0.129 3.871 19 N -0.711 5.711 20 C 0.508 3.492 21 O -0.589 6.589 22 C -0.052 4.052 23 C -0.199 4.199 24 C -0.007 4.007 25 N -0.406 5.406 26 O 0.078 5.922 27 C -0.041 4.041 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.418 0.582 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.271 0.729 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.420 0.580 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.203 0.797 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.820 12.124 -32.135 35.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 H 0.129 0.871 4 C 0.000 4.000 5 N -0.362 5.362 6 C 0.317 3.683 7 O -0.447 6.447 8 C -0.280 4.280 9 S 0.070 5.930 10 C -0.695 4.695 11 H 0.103 0.897 12 C -0.191 4.191 13 N -0.549 5.549 14 Si 0.820 3.180 15 H -0.186 1.186 16 H -0.206 1.206 17 H -0.186 1.186 18 C 0.004 3.996 19 N -0.364 5.364 20 C 0.296 3.704 21 O -0.468 6.468 22 C -0.092 4.092 23 C -0.204 4.204 24 C -0.186 4.186 25 N -0.113 5.113 26 O 0.017 5.983 27 C -0.122 4.122 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.256 0.744 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.259 0.741 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.220 0.780 43 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -5.317 8.726 -32.954 34.502 hybrid contribution -1.283 2.051 1.696 2.955 sum -6.600 10.777 -31.258 33.716 Atomic orbital electron populations 1.21923 0.92845 1.02500 1.03514 1.21421 0.97751 1.01079 0.90997 0.87110 1.21300 0.99771 0.95325 0.83623 1.45640 1.58093 1.28399 1.04052 1.20100 0.78446 0.84706 0.85006 1.90706 1.40974 1.26096 1.86964 1.23368 1.05813 1.03355 0.95430 1.85639 1.74393 1.35921 0.96999 1.23184 1.41632 1.11374 0.93264 0.89726 1.26128 0.94774 0.97536 1.00672 1.70181 1.38954 1.26884 1.18842 0.85006 0.79009 0.77982 0.76017 1.18599 1.20581 1.18565 1.21108 0.99630 0.95146 0.83674 1.45776 1.57759 1.28283 1.04623 1.21178 0.78439 0.85235 0.85550 1.90764 1.41851 1.26877 1.87344 1.19996 1.05350 0.99280 0.84589 1.21094 0.95902 1.02278 1.01080 1.25396 1.02656 0.97958 0.92549 1.73869 0.95567 1.17493 1.24370 1.84770 1.30983 1.40441 1.42152 1.26571 1.00638 0.96528 0.88460 0.91547 0.89763 0.93384 0.92684 0.92433 0.74405 0.86976 0.87026 0.92043 0.92625 0.92376 0.74114 0.83577 0.84347 0.78009 0.73312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.94 71.98 0.64 -0.39 16 2 C -0.09 -0.83 2.46 -10.79 -0.03 -0.86 16 3 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 4 C 0.12 2.35 5.06 86.38 0.44 2.79 16 5 N -0.71 -15.23 5.28 -463.05 -2.45 -17.68 16 6 C 0.53 18.55 7.85 87.66 0.69 19.24 16 7 O -0.57 -25.96 15.86 -3.03 -0.05 -26.01 16 8 C -0.13 -4.82 6.16 71.24 0.44 -4.38 16 9 S -0.16 -8.57 20.57 -56.49 -1.16 -9.73 16 10 C -0.55 -30.66 9.50 67.95 0.65 -30.01 16 11 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 12 C 0.01 0.77 5.49 84.86 0.47 1.23 16 13 N -0.91 -55.71 13.22 21.65 0.29 -55.43 16 14 Si 1.00 42.75 29.55 68.60 2.03 44.78 16 15 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 16 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 18 C 0.13 1.52 5.06 86.38 0.44 1.96 16 19 N -0.71 -4.52 5.28 -463.07 -2.45 -6.97 16 20 C 0.51 5.69 7.82 87.66 0.69 6.38 16 21 O -0.59 -13.77 16.03 -3.04 -0.05 -13.82 16 22 C -0.05 -0.15 6.28 29.10 0.18 0.04 16 23 C -0.20 -2.07 4.82 -19.73 -0.10 -2.17 16 24 C -0.01 -0.10 12.16 85.71 1.04 0.94 16 25 N -0.41 -8.19 12.07 -59.25 -0.72 -8.91 16 26 O 0.08 1.34 11.20 71.65 0.80 2.14 16 27 C -0.04 -0.41 12.26 67.17 0.82 0.42 16 28 H 0.07 0.45 7.18 -2.39 -0.02 0.44 16 29 H 0.08 0.15 7.18 -2.39 -0.02 0.13 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.42 5.67 7.66 -92.71 -0.71 4.96 16 34 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 35 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 36 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 37 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.42 -0.57 7.65 -92.70 -0.71 -1.28 16 40 H 0.15 -0.62 8.14 -2.39 -0.02 -0.64 16 41 H 0.14 -0.36 8.14 -2.39 -0.02 -0.38 16 42 H 0.20 2.03 8.06 -2.91 -0.02 2.00 16 43 H 0.25 0.23 8.06 -2.91 -0.02 0.21 16 Total: -1.00 -92.54 387.59 2.25 -90.29 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -0.37 Total: 6.16 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 6.37 Total: -4.83 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -5.32 Total: -88.98 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: 0.71 Total: -37.69 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -92.54 2.25 -90.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532114521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.737 kcal (2) G-P(sol) polarization free energy of solvation -92.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds