Wall clock time and date at job start Tue Mar 31 2020 23:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28416 * 125.20057 * 2 1 4 4 C 1.31315 * 111.03397 * 180.02562 * 3 2 1 5 5 C 1.39149 * 107.35656 * 359.90840 * 4 3 2 6 6 C 1.36702 * 125.20298 * 179.97438 * 2 1 3 7 7 C 1.47170 * 127.03574 * 0.29807 * 6 2 1 8 8 O 1.21624 * 119.99652 * 92.61493 * 7 6 2 9 9 N 1.34773 * 119.99680 * 272.61309 * 7 6 2 10 10 C 1.46507 * 119.99513 * 185.29217 * 9 7 6 11 11 C 1.53005 * 109.46989 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.46948 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46878 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00418 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99751 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00250 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99694 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47073 * 60.00488 * 17 15 13 19 19 H 1.48498 * 109.46841 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47295 * 300.00109 * 17 15 13 21 21 C 1.50641 * 127.16215 * 180.24182 * 5 4 3 22 22 S 1.81856 * 108.39144 * 341.94428 * 21 5 4 23 23 O 1.42105 * 108.71622 * 291.56627 * 22 21 5 24 24 O 1.42096 * 108.85471 * 160.07277 * 22 21 5 25 25 C 1.81721 * 100.91171 * 45.79496 * 22 21 5 26 26 C 1.50583 * 125.31092 * 179.76807 * 4 3 2 27 27 H 1.09009 * 109.47064 * 274.77364 * 1 2 3 28 28 H 1.08998 * 109.47228 * 34.77082 * 1 2 3 29 29 H 1.09001 * 109.47593 * 154.77561 * 1 2 3 30 30 H 0.96996 * 120.00608 * 5.29737 * 9 7 6 31 31 H 1.08998 * 109.47267 * 300.00472 * 10 9 7 32 32 H 1.09001 * 109.47116 * 60.00333 * 10 9 7 33 33 H 1.09005 * 109.46595 * 299.99951 * 11 10 9 34 34 H 1.08993 * 109.47400 * 59.99797 * 11 10 9 35 35 H 1.08997 * 109.47514 * 299.99621 * 12 11 10 36 36 H 1.09001 * 109.47257 * 59.99920 * 12 11 10 37 37 H 0.97002 * 119.99820 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.68098 * 101.66790 * 21 5 4 39 39 H 1.08994 * 109.67811 * 222.22002 * 21 5 4 40 40 H 1.08997 * 109.51679 * 173.32919 * 25 22 21 41 41 H 1.09006 * 109.51710 * 53.16053 * 25 22 21 42 42 H 1.09006 * 109.23678 * 281.07010 * 26 4 3 43 43 H 1.08998 * 109.24119 * 40.46097 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0493 0.0000 4 6 3.4784 0.7280 -0.0005 5 6 3.5559 -0.6614 0.0012 6 6 2.2530 -1.1170 0.0005 7 6 1.8041 -2.5186 -0.0050 8 8 1.6689 -3.1096 -1.0593 9 7 1.5429 -3.1470 1.1583 10 6 1.2086 -4.5734 1.1612 11 6 0.9589 -5.0357 2.5982 12 6 0.6104 -6.5254 2.6013 13 6 0.3650 -6.9809 4.0168 14 1 0.4496 -6.2783 4.8325 15 6 0.0325 -8.2948 4.2703 16 7 -0.0700 -9.1506 3.2770 17 14 -0.2710 -8.8595 6.0249 18 1 -1.3974 -8.0859 6.6061 19 1 -0.6093 -10.3055 6.0279 20 1 0.9531 -8.6364 6.8355 21 6 4.8051 -1.5031 0.0064 22 16 6.1996 -0.4637 -0.5247 23 8 6.0304 -0.1407 -1.8982 24 8 7.4121 -1.0676 -0.0956 25 6 5.9106 1.0321 0.4660 26 6 4.6231 1.7064 -0.0057 27 1 -0.3634 0.0855 1.0242 28 1 -0.3633 0.8441 -0.5861 29 1 -0.3634 -0.9296 -0.4379 30 1 1.5762 -2.6550 1.9935 31 1 0.3105 -4.7373 0.5659 32 1 2.0357 -5.1413 0.7351 33 1 1.8569 -4.8717 3.1939 34 1 0.1318 -4.4678 3.0241 35 1 -0.2874 -6.6899 2.0056 36 1 1.4379 -7.0931 2.1757 37 1 -0.3036 -10.0750 3.4555 38 1 4.9901 -1.8793 1.0125 39 1 4.6872 -2.3393 -0.6828 40 1 6.7479 1.7187 0.3415 41 1 5.8150 0.7598 1.5171 42 1 4.7663 2.0862 -1.0173 43 1 4.3883 2.5374 0.6594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537618669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:29 Heat of formation + Delta-G solvation = -36.136343 kcal Electronic energy + Delta-G solvation = -27260.583767 eV Core-core repulsion = 23241.715289 eV Total energy + Delta-G solvation = -4018.868477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.12181 -39.54209 -37.41968 -36.34655 -35.99201 -35.67263 -33.53424 -33.05773 -32.34594 -31.30502 -29.09566 -27.16540 -26.82706 -24.25910 -23.91332 -22.33679 -21.02915 -20.88159 -19.88981 -18.93744 -18.05377 -17.14302 -17.03914 -16.69662 -16.45196 -16.14899 -15.86523 -15.57455 -15.28005 -14.91604 -14.53867 -14.49115 -14.08486 -14.01389 -13.64715 -13.50692 -13.32495 -13.03979 -12.92750 -12.41833 -12.38380 -12.34901 -12.20537 -11.99410 -11.90911 -11.46317 -11.27519 -10.96216 -10.89209 -10.73844 -10.63798 -10.39926 -10.00741 -9.56190 -9.42069 -9.24152 -9.21811 -9.12447 -8.44960 -6.09568 -4.13381 -0.37528 1.20437 1.71143 1.97760 2.24924 2.42420 3.00542 3.26473 3.28448 3.31986 3.33356 3.47474 3.89016 4.05211 4.16748 4.32820 4.38012 4.47096 4.51575 4.64714 4.67100 4.75356 4.90896 4.97518 5.17867 5.24495 5.26341 5.33221 5.38949 5.48874 5.57320 5.92312 5.96459 6.13262 6.22597 6.41470 6.60627 6.83992 7.29667 7.52893 7.54322 7.64166 7.87554 7.91254 8.28401 8.92847 9.51398 11.01583 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014782 B = 0.002388 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.784389 B =11720.149330 C =12646.786985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.264 5.264 3 N -0.265 5.265 4 C 0.020 3.980 5 C -0.153 4.153 6 C 0.004 3.996 7 C 0.581 3.419 8 O -0.516 6.516 9 N -0.708 5.708 10 C 0.113 3.887 11 C -0.121 4.121 12 C 0.025 3.975 13 C -0.526 4.526 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.530 4.530 22 S 2.426 3.574 23 O -0.926 6.926 24 O -0.935 6.935 25 C -0.600 4.600 26 C -0.018 4.018 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.402 0.598 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.019 0.981 36 H 0.020 0.980 37 H 0.263 0.737 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.139 0.861 42 H 0.104 0.896 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.339 24.635 -5.062 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.051 5.051 3 N -0.097 5.097 4 C -0.138 4.138 5 C -0.164 4.164 6 C -0.126 4.126 7 C 0.363 3.637 8 O -0.390 6.390 9 N -0.358 5.358 10 C -0.009 4.009 11 C -0.159 4.159 12 C -0.013 4.013 13 C -0.564 4.564 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.658 4.658 22 S 2.607 3.393 23 O -0.923 6.923 24 O -0.932 6.932 25 C -0.730 4.730 26 C -0.058 4.058 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.237 0.763 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.157 0.843 42 H 0.122 0.878 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.961 24.689 -6.489 26.460 hybrid contribution -0.456 -0.824 2.026 2.234 sum 6.504 23.866 -4.463 25.135 Atomic orbital electron populations 1.22337 0.72101 1.06062 1.05176 1.45580 1.07730 1.01595 1.50146 1.73185 1.02648 1.13164 1.20705 1.21672 0.92913 0.91932 1.07239 1.18992 0.92006 0.92465 1.12937 1.21381 0.91006 0.89572 1.10686 1.16989 0.78186 0.83705 0.84860 1.90891 1.50764 1.66453 1.30923 1.46251 1.68802 1.12569 1.08205 1.21838 1.01180 0.77427 1.00427 1.21913 1.00829 1.01255 0.91902 1.19019 0.97156 0.87634 0.97468 1.21137 1.47781 0.94775 0.92726 0.92690 1.25024 0.95353 0.96850 0.97128 1.69945 1.48078 1.04112 1.31022 0.86636 0.78715 0.77652 0.84859 1.20244 1.21213 1.20194 1.28748 1.10798 1.12647 1.13639 1.07866 0.76249 0.78419 0.76748 1.93611 1.86345 1.83140 1.29172 1.93625 1.40434 1.75431 1.83678 1.30087 1.06187 1.20703 1.16019 1.19334 0.85935 0.95985 1.04507 0.88888 0.87859 0.88290 0.76335 0.91114 0.91136 0.92516 0.92606 0.96227 0.96182 0.92768 0.83543 0.83634 0.83705 0.84294 0.87822 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 11.22 59.85 0.67 1.24 16 2 N -0.26 -2.75 3.75 -63.95 -0.24 -2.99 16 3 N -0.27 -2.85 11.91 33.57 0.40 -2.45 16 4 C 0.02 0.20 6.91 -82.53 -0.57 -0.37 16 5 C -0.15 -1.65 5.96 -104.39 -0.62 -2.27 16 6 C 0.00 0.05 6.72 -82.15 -0.55 -0.50 16 7 C 0.58 8.00 6.82 -12.64 -0.09 7.91 16 8 O -0.52 -9.07 17.12 5.26 0.09 -8.98 16 9 N -0.71 -8.88 5.55 -61.46 -0.34 -9.22 16 10 C 0.11 1.76 5.68 -4.04 -0.02 1.74 16 11 C -0.12 -2.15 5.27 -26.73 -0.14 -2.29 16 12 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 13 C -0.53 -14.12 9.11 -34.44 -0.31 -14.43 16 14 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 17 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.53 -4.71 6.51 35.98 0.23 -4.47 16 22 S 2.43 20.58 5.34 -107.50 -0.57 20.01 16 23 O -0.93 -11.20 17.83 -57.81 -1.03 -12.23 16 24 O -0.93 -10.66 18.11 -57.81 -1.05 -11.71 16 25 C -0.60 -2.88 6.33 37.06 0.23 -2.64 16 26 C -0.02 -0.12 5.87 -28.04 -0.16 -0.28 16 27 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.69 7.67 -51.93 -0.40 0.30 16 30 H 0.40 4.06 8.46 -40.82 -0.35 3.71 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.15 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.15 1.39 8.14 -51.93 -0.42 0.96 16 40 H 0.14 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.14 0.40 8.14 -51.92 -0.42 -0.03 16 42 H 0.10 0.62 8.12 -51.93 -0.42 0.19 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 376.72 15.07 5.68 5.68 Total: -1.00 -38.38 376.72 -9.12 -47.50 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.20 Total: -1.74 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -1.57 Total: -14.40 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.56 Total: -40.00 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -1.99 Total: -32.91 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 20.58 SS G_CDS: -0.57 Total: 20.01 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.38 -9.12 -47.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537618669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.360 kcal (2) G-P(sol) polarization free energy of solvation -38.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds