Wall clock time and date at job start Tue Mar 31 2020 23:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 5 5 C 1.34784 * 120.00075 * 85.00024 * 4 2 1 6 6 O 1.21707 * 119.99262 * 0.02562 * 5 4 2 7 7 C 1.46576 * 120.00539 * 180.02562 * 5 4 2 8 8 C 1.36649 * 125.46043 * 180.02562 * 7 5 4 9 9 C 1.37474 * 113.29596 * 179.97438 * 8 7 5 10 10 C 1.33816 * 115.10131 * 0.02562 * 9 8 7 11 11 S 1.70616 * 110.95651 * 359.75999 * 10 9 8 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.21279 * 120.00072 * 119.99863 * 12 2 1 14 14 N 1.34777 * 119.99762 * 300.00068 * 12 2 1 15 15 C 1.46496 * 120.00258 * 180.02562 * 14 12 2 16 16 C 1.52993 * 109.47551 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47318 * 64.99550 * 16 15 14 18 18 C 1.52999 * 109.47457 * 184.99901 * 16 15 14 19 19 O 1.42903 * 109.47194 * 54.99873 * 18 16 15 20 20 N 1.46501 * 109.46854 * 304.99739 * 16 15 14 21 21 C 1.36938 * 120.00168 * 155.00178 * 20 16 15 22 22 H 1.08002 * 120.00014 * 359.97438 * 21 20 16 23 23 C 1.38811 * 120.00241 * 180.02562 * 21 20 16 24 24 N 1.31619 * 120.00033 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99971 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47390 * 59.99547 * 25 23 21 27 27 H 1.48498 * 109.46816 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46859 * 299.99333 * 25 23 21 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.96996 * 120.00792 * 265.00493 * 4 2 1 33 33 H 1.07993 * 123.35298 * 359.93907 * 8 7 5 34 34 H 1.07999 * 122.44960 * 180.02562 * 9 8 7 35 35 H 1.08002 * 124.51858 * 180.02562 * 10 9 8 36 36 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 37 37 H 1.09004 * 109.46875 * 299.99676 * 15 14 12 38 38 H 1.09000 * 109.47024 * 59.99522 * 15 14 12 39 39 H 1.08996 * 109.47278 * 174.99624 * 18 16 15 40 40 H 1.09000 * 109.47255 * 295.00017 * 18 16 15 41 41 H 0.96699 * 114.00011 * 180.02562 * 19 18 16 42 42 H 0.96998 * 120.00221 * 334.99940 * 20 16 15 43 43 H 0.96996 * 120.00088 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3572 6 8 1.8580 1.1626 -2.4117 7 6 2.6351 -0.7095 -3.5541 8 6 2.8083 -0.1390 -4.7837 9 6 3.2799 -1.0182 -5.7294 10 6 3.4860 -2.2659 -5.2919 11 16 3.0975 -2.4039 -3.6363 12 6 2.0324 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1955 -0.9402 3.6508 16 6 1.6859 -0.2187 4.9000 17 1 0.5996 -0.2956 4.9463 18 6 2.2964 -0.8634 6.1460 19 8 3.7208 -0.8668 6.0312 20 7 2.0735 1.1929 4.8408 21 6 1.3461 2.1318 5.5224 22 1 0.4865 1.8317 6.1033 23 6 1.7130 3.4693 5.4659 24 7 2.7603 3.8351 4.7576 25 14 0.7211 4.7500 6.3963 26 1 0.7409 4.4335 7.8470 27 1 1.3152 6.0929 6.1749 28 1 -0.6809 4.7417 5.9069 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2490 -1.6318 -1.1526 33 1 2.5953 0.8991 -4.9919 34 1 3.4702 -0.7235 -6.7508 35 1 3.8535 -3.0763 -5.9040 36 1 1.1494 0.5389 2.5436 37 1 1.8325 -1.9680 3.6509 38 1 3.2855 -0.9398 3.6506 39 1 2.0045 -0.2951 7.0291 40 1 1.9369 -1.8882 6.2381 41 1 4.1754 -1.2622 6.7876 42 1 2.8453 1.4624 4.3188 43 1 3.0169 4.7697 4.7184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571436106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:31 Heat of formation + Delta-G solvation = -75.008199 kcal Electronic energy + Delta-G solvation = -26939.499545 eV Core-core repulsion = 22918.945458 eV Total energy + Delta-G solvation = -4020.554087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.35695 -39.20408 -37.71642 -37.15569 -35.11034 -34.83494 -33.60187 -31.81526 -31.01097 -29.53546 -28.28644 -25.73968 -25.36421 -23.91674 -23.48373 -21.45440 -20.22164 -20.11275 -19.45386 -18.94695 -17.66712 -16.85688 -16.66007 -16.44033 -15.94870 -15.74206 -15.36465 -15.05423 -14.81061 -14.48795 -14.06350 -13.84798 -13.52939 -13.39088 -13.26529 -13.12868 -13.03034 -12.85259 -12.62787 -12.53374 -12.33031 -11.96901 -11.63495 -11.44363 -11.24445 -10.90024 -10.85095 -10.62332 -10.22818 -10.14904 -9.82586 -9.72877 -9.41021 -9.32095 -9.10332 -8.99561 -8.88422 -8.69362 -7.06647 -5.82882 -3.14027 0.24249 1.19126 1.60063 2.13640 2.76137 2.77775 3.06425 3.38718 3.43607 3.45683 3.56762 4.50988 4.56842 4.69006 4.84448 4.90103 5.00609 5.03616 5.17560 5.18830 5.36853 5.47153 5.52575 5.57620 5.64467 5.73809 5.84396 5.89153 5.98329 6.00935 6.02886 6.07434 6.19303 6.31689 6.47224 6.69283 6.79264 7.31214 7.60084 7.78127 8.01678 8.17370 8.33625 8.40333 9.45994 10.00352 10.36589 11.38409 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014999 B = 0.002467 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.290136 B =11349.140475 C =12584.853716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 H 0.121 0.879 4 N -0.707 5.707 5 C 0.593 3.407 6 O -0.526 6.526 7 C -0.264 4.264 8 C -0.056 4.056 9 C -0.151 4.151 10 C -0.233 4.233 11 S 0.209 5.791 12 C 0.510 3.490 13 O -0.552 6.552 14 N -0.703 5.703 15 C 0.118 3.882 16 C 0.165 3.835 17 H 0.066 0.934 18 C 0.059 3.941 19 O -0.560 6.560 20 N -0.713 5.713 21 C -0.251 4.251 22 H 0.070 0.930 23 C -0.006 4.006 24 N -0.924 5.924 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.285 1.285 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.406 0.594 33 H 0.155 0.845 34 H 0.145 0.855 35 H 0.169 0.831 36 H 0.412 0.588 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.026 0.974 41 H 0.364 0.636 42 H 0.389 0.611 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.017 -14.940 -15.749 21.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 H 0.138 0.862 4 N -0.360 5.360 5 C 0.379 3.621 6 O -0.404 6.404 7 C -0.384 4.384 8 C -0.090 4.090 9 C -0.182 4.182 10 C -0.371 4.371 11 S 0.476 5.524 12 C 0.294 3.706 13 O -0.431 6.431 14 N -0.354 5.354 15 C -0.006 4.006 16 C 0.054 3.946 17 H 0.084 0.916 18 C -0.022 4.022 19 O -0.364 6.364 20 N -0.355 5.355 21 C -0.382 4.382 22 H 0.088 0.912 23 C -0.203 4.203 24 N -0.571 5.571 25 Si 0.737 3.263 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.212 1.212 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.243 0.757 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.186 0.814 36 H 0.249 0.751 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.209 0.791 42 H 0.223 0.777 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.945 -15.576 -15.263 21.894 hybrid contribution -0.178 1.624 -0.008 1.634 sum -2.123 -13.953 -15.271 20.794 Atomic orbital electron populations 1.22132 0.92563 1.02962 1.04066 1.20826 0.95865 0.98496 0.83165 0.86165 1.45583 1.67395 1.14493 1.08519 1.16903 0.77443 0.86092 0.81700 1.90858 1.50226 1.14720 1.84577 1.24619 1.16021 0.98812 0.98954 1.20825 0.96411 1.01509 0.90245 1.20055 1.04074 0.92465 1.01592 1.25372 1.08570 1.02344 1.00842 1.83237 1.58526 1.06029 1.04562 1.20379 0.80532 0.84712 0.84979 1.90658 1.38669 1.26931 1.86797 1.45913 1.52559 1.32046 1.04899 1.21593 1.00538 0.94841 0.83613 1.20592 0.96913 0.86613 0.90461 0.91597 1.23037 0.81199 0.97111 1.00876 1.86569 1.18919 1.84831 1.46042 1.42370 1.34767 0.99345 1.58998 1.19148 1.07791 0.87424 1.23867 0.91237 1.24756 0.98043 0.97201 1.00324 1.69660 1.27049 1.16494 1.43928 0.86299 0.79309 0.81159 0.79511 1.21356 1.21692 1.21191 0.90812 0.90248 0.91878 0.75701 0.82766 0.83693 0.81377 0.75079 0.91951 0.90439 0.93276 0.95546 0.79131 0.77666 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.38 37.16 0.35 -1.51 16 2 C 0.12 1.75 2.98 -69.08 -0.21 1.55 16 3 H 0.12 1.85 7.58 -51.93 -0.39 1.46 16 4 N -0.71 -9.49 4.95 -56.27 -0.28 -9.76 16 5 C 0.59 8.41 7.75 -12.90 -0.10 8.31 16 6 O -0.53 -9.02 16.50 5.18 0.09 -8.94 16 7 C -0.26 -3.05 6.45 -36.80 -0.24 -3.29 16 8 C -0.06 -0.58 10.01 -40.43 -0.40 -0.98 16 9 C -0.15 -1.20 10.15 -41.41 -0.42 -1.62 16 10 C -0.23 -1.72 10.92 29.18 0.32 -1.40 16 11 S 0.21 1.83 22.16 -107.50 -2.38 -0.55 16 12 C 0.51 8.15 7.22 -10.98 -0.08 8.07 16 13 O -0.55 -10.03 15.84 5.56 0.09 -9.94 16 14 N -0.70 -11.36 5.28 -60.30 -0.32 -11.68 16 15 C 0.12 2.01 5.12 -4.05 -0.02 1.99 16 16 C 0.17 3.02 2.84 -67.93 -0.19 2.82 16 17 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 18 C 0.06 0.99 6.86 37.16 0.25 1.25 16 19 O -0.56 -9.76 12.64 -35.23 -0.45 -10.21 16 20 N -0.71 -16.55 4.51 -53.43 -0.24 -16.79 16 21 C -0.25 -6.48 9.93 -15.06 -0.15 -6.63 16 22 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 23 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 24 N -0.92 -27.09 13.06 55.49 0.72 -26.36 16 25 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.88 7.56 -51.93 -0.39 0.49 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.41 5.09 6.90 -40.82 -0.28 4.81 16 33 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 34 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.41 6.71 7.56 -40.82 -0.31 6.40 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.50 7.39 -51.93 -0.38 1.12 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.36 4.55 9.12 45.56 0.42 4.96 16 42 H 0.39 10.11 7.80 -40.82 -0.32 9.79 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -33.30 383.92 -8.00 -41.30 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -5.01 Total: 22.32 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -0.99 Total: 8.28 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -0.11 Total: -64.59 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.27 Total: -29.09 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.38 Total: -0.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.30 -8.00 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571436106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.707 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds