Wall clock time and date at job start Tue Mar 31 2020 23:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47209 * 2 1 4 4 N 1.46501 * 109.47772 * 239.99878 * 2 1 3 5 5 C 1.34780 * 119.99753 * 84.99527 * 4 2 1 6 6 O 1.21692 * 120.00280 * 0.02562 * 5 4 2 7 7 C 1.46583 * 119.99647 * 180.02562 * 5 4 2 8 8 C 1.36650 * 125.45747 * 180.02562 * 7 5 4 9 9 C 1.37473 * 113.29562 * 179.97438 * 8 7 5 10 10 C 1.33815 * 115.10496 * 0.02562 * 9 8 7 11 11 S 1.70624 * 110.95254 * 359.75567 * 10 9 8 12 12 C 1.50700 * 109.47128 * 119.99621 * 2 1 3 13 13 O 1.21280 * 120.00133 * 120.00237 * 12 2 1 14 14 N 1.34775 * 120.00028 * 299.99974 * 12 2 1 15 15 C 1.46502 * 119.99947 * 179.97438 * 14 12 2 16 16 C 1.53004 * 109.46925 * 180.02562 * 15 14 12 17 17 H 1.08995 * 109.47216 * 295.00133 * 16 15 14 18 18 C 1.52999 * 109.47083 * 175.00128 * 16 15 14 19 19 O 1.42898 * 109.47018 * 305.00136 * 18 16 15 20 20 N 1.46498 * 109.47065 * 55.00022 * 16 15 14 21 21 C 1.36943 * 119.99752 * 204.72207 * 20 16 15 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 16 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 16 24 24 N 1.31611 * 120.00081 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99814 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47483 * 90.00178 * 25 23 21 27 27 H 1.48498 * 109.47011 * 210.00042 * 25 23 21 28 28 H 1.48502 * 109.47495 * 329.99664 * 25 23 21 29 29 H 1.09001 * 109.46707 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47454 * 300.00110 * 1 2 3 31 31 H 1.09005 * 109.46765 * 60.00891 * 1 2 3 32 32 H 0.97001 * 119.99863 * 265.00540 * 4 2 1 33 33 H 1.07999 * 123.35175 * 359.93775 * 8 7 5 34 34 H 1.07999 * 122.44558 * 180.02562 * 9 8 7 35 35 H 1.07994 * 124.52766 * 179.97438 * 10 9 8 36 36 H 0.96997 * 119.99994 * 0.02562 * 14 12 2 37 37 H 1.08997 * 109.46993 * 60.00870 * 15 14 12 38 38 H 1.08999 * 109.47017 * 300.00291 * 15 14 12 39 39 H 1.09003 * 109.47083 * 65.00130 * 18 16 15 40 40 H 1.08995 * 109.47300 * 184.99893 * 18 16 15 41 41 H 0.96709 * 114.00043 * 179.97438 * 19 18 16 42 42 H 0.97001 * 120.00384 * 25.00562 * 20 16 15 43 43 H 0.97008 * 120.00329 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1472 -0.0182 -2.3571 6 8 1.8580 1.1626 -2.4117 7 6 2.6354 -0.7094 -3.5540 8 6 2.8086 -0.1389 -4.7836 9 6 3.2804 -1.0181 -5.7293 10 6 3.4866 -2.2658 -5.2918 11 16 3.0981 -2.4038 -3.6361 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1946 -0.9407 3.6508 16 6 1.6842 -0.2196 4.9000 17 1 2.1188 0.7789 4.9462 18 6 2.0885 -1.0100 6.1461 19 8 1.6170 -2.3541 6.0313 20 7 0.2242 -0.1144 4.8408 21 6 -0.4189 0.8811 5.5269 22 1 0.1506 1.5912 6.1081 23 6 -1.8027 0.9773 5.4755 24 7 -2.4208 1.9343 6.1345 25 14 -2.7877 -0.2515 4.4709 26 1 -3.1485 -1.4123 5.3240 27 1 -4.0255 0.3980 3.9697 28 1 -1.9724 -0.7171 3.3204 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 2.2491 -1.6318 -1.1525 33 1 2.5955 0.8992 -4.9919 34 1 3.4707 -0.7233 -6.7507 35 1 3.8534 -3.0763 -5.9039 36 1 1.1488 0.5386 2.5435 37 1 3.2846 -0.9410 3.6510 38 1 1.8309 -1.9682 3.6506 39 1 3.1746 -1.0125 6.2382 40 1 1.6501 -0.5453 7.0292 41 1 1.8382 -2.9145 6.7878 42 1 -0.2873 -0.7523 4.3189 43 1 -3.3878 2.0018 6.0983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571436107.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:34 Heat of formation + Delta-G solvation = -71.871042 kcal Electronic energy + Delta-G solvation = -27087.015091 eV Core-core repulsion = 23066.597041 eV Total energy + Delta-G solvation = -4020.418050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.47040 -39.32603 -37.79926 -37.31847 -35.23480 -34.96516 -33.72501 -31.90363 -31.19382 -29.66150 -28.80880 -25.84069 -25.45100 -23.91035 -23.27462 -21.54321 -20.35320 -20.18807 -19.56029 -19.05493 -18.01153 -16.94755 -16.91849 -16.58214 -16.01517 -15.80265 -15.42106 -15.26391 -14.94594 -14.46847 -14.19882 -13.82523 -13.76951 -13.52957 -13.30283 -13.13439 -13.07536 -12.88244 -12.70224 -12.60272 -12.40795 -12.31504 -11.74742 -11.60684 -11.30412 -11.05738 -10.90797 -10.77408 -10.32066 -10.17474 -9.87265 -9.69051 -9.53597 -9.41481 -9.17670 -9.05087 -8.94886 -8.85302 -7.40343 -5.86998 -3.24051 0.17364 1.12693 1.53844 2.06645 2.61044 2.68633 2.96773 3.31724 3.37996 3.41192 3.44857 4.48245 4.51354 4.62082 4.72085 4.77376 4.94114 4.97523 5.05610 5.12255 5.15555 5.27370 5.41148 5.54729 5.58711 5.69489 5.74754 5.82233 5.85289 5.87322 5.96264 6.09342 6.10077 6.16363 6.32594 6.53683 6.64338 7.21822 7.62663 7.85909 7.91447 8.05359 8.25244 8.31634 9.09180 9.81579 10.01176 11.30540 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.002581 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.479551 B =10844.848329 C =11798.575850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.126 3.874 3 H 0.118 0.882 4 N -0.707 5.707 5 C 0.594 3.406 6 O -0.528 6.528 7 C -0.266 4.266 8 C -0.056 4.056 9 C -0.151 4.151 10 C -0.232 4.232 11 S 0.210 5.790 12 C 0.509 3.491 13 O -0.548 6.548 14 N -0.708 5.708 15 C 0.115 3.885 16 C 0.171 3.829 17 H 0.075 0.925 18 C 0.059 3.941 19 O -0.565 6.565 20 N -0.738 5.738 21 C -0.252 4.252 22 H 0.091 0.909 23 C 0.011 3.989 24 N -0.929 5.929 25 Si 0.885 3.115 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.276 1.276 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.407 0.593 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.169 0.831 36 H 0.412 0.588 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.031 0.969 40 H 0.055 0.945 41 H 0.367 0.633 42 H 0.366 0.634 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.841 -8.638 -18.779 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.018 3.982 3 H 0.136 0.864 4 N -0.361 5.361 5 C 0.380 3.620 6 O -0.406 6.406 7 C -0.386 4.386 8 C -0.089 4.089 9 C -0.182 4.182 10 C -0.370 4.370 11 S 0.478 5.522 12 C 0.293 3.707 13 O -0.427 6.427 14 N -0.359 5.359 15 C -0.009 4.009 16 C 0.061 3.939 17 H 0.093 0.907 18 C -0.022 4.022 19 O -0.369 6.369 20 N -0.381 5.381 21 C -0.382 4.382 22 H 0.109 0.891 23 C -0.186 4.186 24 N -0.576 5.576 25 Si 0.715 3.285 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.202 1.202 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.244 0.756 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.187 0.813 36 H 0.249 0.751 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.212 0.788 42 H 0.199 0.801 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.873 -9.244 -18.237 24.161 hybrid contribution -0.750 -0.030 -1.033 1.277 sum 12.122 -9.274 -19.270 24.582 Atomic orbital electron populations 1.22178 0.92248 1.03450 1.04294 1.20816 0.96088 0.98129 0.83147 0.86386 1.45606 1.67341 1.14575 1.08532 1.16894 0.77354 0.86085 0.81665 1.90843 1.50348 1.14807 1.84583 1.24608 1.16189 0.98850 0.98962 1.20821 0.96353 1.01512 0.90216 1.20059 1.04102 0.92468 1.01605 1.25385 1.08443 1.02335 1.00855 1.83276 1.58417 1.05965 1.04586 1.20425 0.80507 0.84779 0.84974 1.90667 1.38714 1.26548 1.86777 1.45956 1.52615 1.32330 1.05018 1.21653 0.98368 0.97382 0.83483 1.20577 0.86431 0.96448 0.90494 0.90676 1.22994 0.95416 0.83032 1.00767 1.86511 1.81796 1.22254 1.46363 1.42728 1.00516 1.35393 1.59503 1.19034 0.90270 1.05312 1.23559 0.89144 1.24650 0.96274 0.97934 0.99721 1.69695 1.08568 1.33762 1.45587 0.86567 0.80068 0.81420 0.80467 1.21104 1.21806 1.20231 0.91703 0.89952 0.90683 0.75606 0.82771 0.83658 0.81336 0.75122 0.91493 0.90424 0.95095 0.92692 0.78813 0.80083 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.38 37.16 0.35 -1.75 16 2 C 0.13 1.68 2.98 -69.08 -0.21 1.47 16 3 H 0.12 1.55 7.58 -51.93 -0.39 1.15 16 4 N -0.71 -9.01 4.95 -56.27 -0.28 -9.29 16 5 C 0.59 7.90 7.75 -12.89 -0.10 7.80 16 6 O -0.53 -8.44 16.50 5.20 0.09 -8.35 16 7 C -0.27 -2.90 6.45 -36.79 -0.24 -3.13 16 8 C -0.06 -0.53 10.01 -40.43 -0.40 -0.93 16 9 C -0.15 -1.12 10.15 -41.41 -0.42 -1.54 16 10 C -0.23 -1.60 10.92 29.18 0.32 -1.28 16 11 S 0.21 1.75 22.16 -107.50 -2.38 -0.63 16 12 C 0.51 7.65 7.22 -10.99 -0.08 7.57 16 13 O -0.55 -9.44 15.84 5.56 0.09 -9.35 16 14 N -0.71 -10.70 5.28 -60.29 -0.32 -11.02 16 15 C 0.12 1.82 5.12 -4.04 -0.02 1.80 16 16 C 0.17 2.95 2.84 -67.93 -0.19 2.76 16 17 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 18 C 0.06 0.93 6.85 37.16 0.25 1.19 16 19 O -0.57 -9.02 12.64 -35.23 -0.45 -9.46 16 20 N -0.74 -15.86 4.31 -53.43 -0.23 -16.09 16 21 C -0.25 -6.53 10.41 -15.06 -0.16 -6.69 16 22 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 23 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 24 N -0.93 -27.91 13.97 55.49 0.78 -27.14 16 25 Si 0.88 21.40 27.74 -169.99 -4.71 16.69 16 26 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.07 7.56 -51.93 -0.39 0.68 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.41 4.92 6.90 -40.82 -0.28 4.64 16 33 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 36 H 0.41 6.20 7.55 -40.82 -0.31 5.89 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.36 7.39 -51.93 -0.38 0.98 16 39 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.37 4.12 9.12 45.56 0.42 4.53 16 42 H 0.37 8.14 5.66 -40.82 -0.23 7.91 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -33.61 380.80 -7.64 -41.25 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: -4.97 Total: 20.18 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -0.99 Total: 7.47 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -0.05 Total: -63.53 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.27 Total: -27.17 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.71 Total: 16.69 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.38 Total: -0.63 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.61 -7.64 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571436107.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.618 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds