Wall clock time and date at job start Tue Mar 31 2020 23:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47626 * 2 1 4 4 C 1.46492 * 120.00058 * 89.99883 * 3 2 1 5 5 C 1.53000 * 109.47069 * 270.00474 * 4 3 2 6 6 C 1.53004 * 109.46992 * 180.02562 * 5 4 3 7 7 N 1.46504 * 109.46932 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99858 * 180.02562 * 7 6 5 9 9 O 1.21503 * 119.99892 * 359.97438 * 8 7 6 10 10 C 1.48329 * 119.99999 * 180.27206 * 8 7 6 11 11 C 1.42268 * 126.93781 * 179.43261 * 10 8 7 12 12 C 1.35318 * 103.92043 * 179.85802 * 11 10 8 13 13 O 1.34013 * 106.67050 * 0.40002 * 12 11 10 14 14 N 1.20905 * 111.83953 * 359.72964 * 13 12 11 15 15 C 1.34781 * 119.99674 * 270.00082 * 3 2 1 16 16 O 1.21275 * 119.99671 * 179.97438 * 15 3 2 17 17 C 1.50701 * 120.00085 * 359.97438 * 15 3 2 18 18 S 1.81001 * 109.46997 * 179.97438 * 17 15 3 19 19 C 1.76196 * 100.00072 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99563 * 359.97438 * 19 18 17 21 21 C 1.38793 * 120.00325 * 179.97438 * 19 18 17 22 22 N 1.31639 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00392 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47223 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47189 * 119.99946 * 23 21 19 26 26 H 1.48500 * 109.47188 * 240.00061 * 23 21 19 27 27 H 1.09008 * 109.47195 * 300.00079 * 1 2 3 28 28 H 1.09005 * 109.47435 * 59.99606 * 1 2 3 29 29 H 1.08997 * 109.47557 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47060 * 239.99386 * 2 1 3 31 31 H 1.09006 * 109.47138 * 119.99938 * 2 1 3 32 32 H 1.08998 * 109.47276 * 150.00185 * 4 3 2 33 33 H 1.08997 * 109.47264 * 30.00133 * 4 3 2 34 34 H 1.08993 * 109.47616 * 60.00389 * 5 4 3 35 35 H 1.09005 * 109.47129 * 299.99432 * 5 4 3 36 36 H 1.08998 * 109.47524 * 59.99606 * 6 5 4 37 37 H 1.08997 * 109.47093 * 299.99507 * 6 5 4 38 38 H 0.96991 * 120.00424 * 359.97438 * 7 6 5 39 39 H 1.08006 * 128.04186 * 0.02562 * 11 10 8 40 40 H 1.08001 * 126.66415 * 180.13247 * 12 11 10 41 41 H 1.08995 * 109.47082 * 299.99879 * 17 15 3 42 42 H 1.08998 * 109.47297 * 59.99970 * 17 15 3 43 43 H 0.97002 * 119.99884 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2687 5 6 0.9876 2.7930 1.7103 6 6 1.2429 3.5148 3.0351 7 7 0.0222 4.2059 3.4577 8 6 0.0112 4.9136 4.6046 9 8 1.0136 4.9780 5.2884 10 6 -1.2264 5.6084 5.0356 11 6 -1.4059 6.3816 6.2163 12 6 -2.6925 6.7942 6.1428 13 8 -3.1963 6.2823 5.0114 14 7 -2.3763 5.6292 4.4089 15 6 2.2430 2.0165 -1.1673 16 8 2.6470 3.1600 -1.1673 17 6 1.9923 1.3058 -2.4724 18 16 2.3836 2.4150 -3.8481 19 6 2.0117 1.3585 -5.2083 20 1 1.6580 0.3536 -5.0304 21 6 2.1733 1.8175 -6.5081 22 7 2.6039 3.0425 -6.7247 23 14 1.7797 0.6972 -7.9501 24 1 1.3162 -0.6191 -7.4422 25 1 0.7108 1.3122 -8.7773 26 1 2.9985 0.5080 -8.7770 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5140 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.0645 2.7984 1.1383 33 1 2.5506 1.3451 2.0283 34 1 0.1857 2.0665 1.8408 35 1 0.6996 3.5198 0.9507 36 1 2.0447 4.2415 2.9044 37 1 1.5311 2.7885 3.7949 38 1 -0.7778 4.1549 2.9117 39 1 -0.6825 6.5927 6.9900 40 1 -3.2136 7.4121 6.8591 41 1 2.6228 0.4186 -2.5299 42 1 0.9445 1.0113 -2.5303 43 1 2.7172 3.3632 -7.6332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577483070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:05 Heat of formation + Delta-G solvation = -11.338123 kcal Electronic energy + Delta-G solvation = -26014.051749 eV Core-core repulsion = 21996.258604 eV Total energy + Delta-G solvation = -4017.793146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.55826 -40.04362 -39.59658 -36.43016 -35.43600 -34.46927 -32.77738 -32.43979 -32.07859 -30.18299 -29.25830 -26.38314 -25.48715 -24.26627 -23.46158 -23.34300 -22.00753 -20.93223 -19.17023 -18.94673 -18.21506 -17.72438 -17.23836 -16.87754 -16.48532 -15.91967 -15.61885 -15.24734 -14.95828 -14.81624 -14.48935 -14.13191 -13.92207 -13.82016 -13.73610 -13.38591 -13.30496 -12.76089 -12.52657 -12.33346 -12.22231 -12.15068 -11.85859 -11.60581 -11.33789 -11.08297 -11.02458 -10.93965 -10.80573 -10.72216 -10.70963 -10.27446 -9.80703 -9.50348 -9.38640 -9.08519 -8.63934 -8.23224 -6.51326 -6.22914 -3.93518 0.67388 1.22655 2.44008 2.68907 2.76036 2.93016 3.03255 3.20454 3.24939 3.29976 3.50201 3.58631 4.15429 4.18998 4.53714 4.60211 4.65714 4.78515 4.87458 4.88455 4.92079 4.99893 5.12005 5.15933 5.24194 5.30876 5.36169 5.38593 5.51560 5.56806 5.62665 5.74696 5.88090 5.91298 5.92621 6.00524 6.07571 6.20664 6.64087 6.95920 7.50078 7.50195 7.58723 7.68809 8.34148 8.53298 9.22526 10.84531 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.001865 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.043178 B =15012.643626 C =15576.191365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.106 3.894 3 N -0.620 5.620 4 C 0.123 3.877 5 C -0.151 4.151 6 C 0.122 3.878 7 N -0.711 5.711 8 C 0.598 3.402 9 O -0.522 6.522 10 C -0.030 4.030 11 C -0.185 4.185 12 C -0.058 4.058 13 O 0.124 5.876 14 N -0.331 5.331 15 C 0.534 3.466 16 O -0.514 6.514 17 C -0.150 4.150 18 S -0.063 6.063 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.408 0.592 39 H 0.182 0.818 40 H 0.226 0.774 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.337 -0.136 27.113 29.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.017 4.017 3 N -0.356 5.356 4 C -0.001 4.001 5 C -0.190 4.190 6 C -0.002 4.002 7 N -0.363 5.363 8 C 0.382 3.618 9 O -0.396 6.396 10 C -0.189 4.189 11 C -0.207 4.207 12 C -0.138 4.138 13 O 0.048 5.952 14 N -0.031 5.031 15 C 0.322 3.678 16 O -0.388 6.388 17 C -0.301 4.301 18 S 0.164 5.836 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.244 0.756 39 H 0.199 0.801 40 H 0.242 0.758 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.290 1.139 26.283 27.900 hybrid contribution -0.802 -1.783 -0.434 2.002 sum -10.092 -0.643 25.849 27.756 Atomic orbital electron populations 1.22303 0.96066 1.02226 1.02709 1.21561 0.94449 0.82410 1.03271 1.47991 1.67868 1.14261 1.05481 1.21207 0.96807 0.96909 0.85132 1.22288 0.99945 1.00531 0.96260 1.21402 0.86421 0.96291 0.96044 1.45867 1.16152 1.51010 1.23298 1.16857 0.85202 0.78469 0.81305 1.90820 1.32997 1.61686 1.54134 1.23614 0.94574 1.04449 0.96261 1.22803 0.97624 1.00724 0.99582 1.26100 0.94826 1.01798 0.91105 1.84813 1.34921 1.47291 1.28217 1.74201 0.99819 1.10630 1.18433 1.20362 0.76328 0.86514 0.84632 1.90699 1.43797 1.17452 1.86809 1.23581 1.04743 1.04515 0.97253 1.85406 1.86916 1.17879 0.93405 1.22893 1.51727 1.01432 0.92193 0.90903 1.24997 0.94681 0.95550 0.98397 1.70033 1.43053 1.15598 1.21560 0.86118 0.78180 0.80074 0.81134 1.19616 1.20574 1.20554 0.92417 0.91886 0.91626 0.89879 0.90595 0.89412 0.90523 0.90854 0.90246 0.90497 0.90834 0.75646 0.80054 0.75765 0.89303 0.89251 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.24 37.15 0.38 -1.25 16 2 C 0.11 1.07 5.97 -4.04 -0.02 1.05 16 3 N -0.62 -8.20 2.47 -173.69 -0.43 -8.63 16 4 C 0.12 1.35 5.45 -4.05 -0.02 1.33 16 5 C -0.15 -1.49 5.65 -26.73 -0.15 -1.64 16 6 C 0.12 1.17 5.67 -4.04 -0.02 1.14 16 7 N -0.71 -7.10 5.55 -61.09 -0.34 -7.44 16 8 C 0.60 6.88 7.85 -12.11 -0.10 6.79 16 9 O -0.52 -7.36 16.95 5.36 0.09 -7.27 16 10 C -0.03 -0.29 7.19 -82.53 -0.59 -0.88 16 11 C -0.18 -1.26 10.99 -39.08 -0.43 -1.69 16 12 C -0.06 -0.24 12.28 29.69 0.36 0.12 16 13 O 0.12 0.89 11.18 17.25 0.19 1.09 16 14 N -0.33 -3.14 11.84 33.29 0.39 -2.75 16 15 C 0.53 9.85 7.69 -10.98 -0.08 9.76 16 16 O -0.51 -11.46 15.44 5.56 0.09 -11.37 16 17 C -0.15 -3.01 4.71 36.01 0.17 -2.84 16 18 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 19 C -0.53 -15.14 9.50 30.94 0.29 -14.85 16 20 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 23 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H 0.06 0.49 6.26 -51.92 -0.33 0.17 16 28 H 0.06 0.72 7.22 -51.93 -0.38 0.34 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.88 6.44 -51.93 -0.33 0.54 16 31 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 32 H 0.09 1.12 7.42 -51.93 -0.39 0.73 16 33 H 0.08 0.62 7.89 -51.93 -0.41 0.21 16 34 H 0.07 0.63 6.26 -51.93 -0.33 0.31 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.41 3.65 8.23 -40.82 -0.34 3.32 16 39 H 0.18 0.96 8.06 -52.48 -0.42 0.53 16 40 H 0.23 -0.16 8.06 -52.49 -0.42 -0.58 16 41 H 0.09 1.65 7.40 -51.92 -0.38 1.27 16 42 H 0.09 1.67 7.19 -51.92 -0.37 1.29 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -37.24 383.81 -6.77 -44.01 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.74 Total: 0.55 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -0.31 Total: -0.99 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.36 Total: -44.21 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.37 Total: -17.56 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.24 -6.77 -44.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577483070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.674 kcal (2) G-P(sol) polarization free energy of solvation -37.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds