Wall clock time and date at job start Tue Mar 31 2020 23:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46792 * 2 1 4 4 C 1.46503 * 120.00074 * 90.00187 * 3 2 1 5 5 C 1.52994 * 109.47078 * 269.99746 * 4 3 2 6 6 N 1.46503 * 109.47077 * 179.97438 * 5 4 3 7 7 C 1.34775 * 119.99823 * 180.02562 * 6 5 4 8 8 O 1.21606 * 120.00140 * 0.02562 * 7 6 5 9 9 C 1.47400 * 120.00046 * 180.02562 * 7 6 5 10 10 C 1.37367 * 128.56254 * 0.02562 * 9 7 6 11 11 O 1.33488 * 106.33950 * 180.24692 * 10 9 7 12 12 N 1.20658 * 113.15744 * 359.51382 * 11 10 9 13 13 C 1.30015 * 112.30289 * 0.50925 * 12 11 10 14 14 C 1.50700 * 127.33713 * 179.67974 * 13 12 11 15 15 C 1.34777 * 120.00029 * 269.99831 * 3 2 1 16 16 O 1.21281 * 120.00009 * 180.02562 * 15 3 2 17 17 C 1.50694 * 120.00018 * 0.02562 * 15 3 2 18 18 S 1.81003 * 109.47165 * 179.97438 * 17 15 3 19 19 C 1.76197 * 100.00026 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00091 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00233 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99437 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00294 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47227 * 60.00303 * 23 21 19 25 25 H 1.48499 * 109.46846 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47059 * 300.00039 * 23 21 19 27 27 H 1.09003 * 109.47220 * 59.99751 * 1 2 3 28 28 H 1.09001 * 109.46711 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46774 * 299.99854 * 1 2 3 30 30 H 1.09000 * 109.46914 * 240.00680 * 2 1 3 31 31 H 1.08996 * 109.47509 * 119.99989 * 2 1 3 32 32 H 1.08996 * 109.47425 * 149.99656 * 4 3 2 33 33 H 1.08998 * 109.46947 * 29.99740 * 4 3 2 34 34 H 1.09004 * 109.46911 * 59.99964 * 5 4 3 35 35 H 1.08998 * 109.47226 * 299.99823 * 5 4 3 36 36 H 0.97000 * 119.99949 * 0.02562 * 6 5 4 37 37 H 1.08002 * 126.82638 * 359.97438 * 10 9 7 38 38 H 1.09000 * 109.47074 * 270.02603 * 14 13 12 39 39 H 1.09004 * 109.46787 * 30.02678 * 14 13 12 40 40 H 1.09000 * 109.46867 * 150.02256 * 14 13 12 41 41 H 1.09000 * 109.46977 * 299.99560 * 17 15 3 42 42 H 1.08994 * 109.47623 * 59.99806 * 17 15 3 43 43 H 0.97004 * 119.99389 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 1.2687 5 6 0.9875 2.7931 1.7104 6 7 1.2315 3.4832 2.9794 7 6 0.2431 4.1894 3.5633 8 8 -0.8513 4.2534 3.0370 9 6 0.4887 4.8842 4.8399 10 6 1.6444 4.9308 5.5810 11 8 1.3726 5.6766 6.6541 12 7 0.2399 6.0921 6.6687 13 6 -0.4431 5.6993 5.6344 14 6 -1.8827 6.0121 5.3173 15 6 2.2429 2.0166 -1.1672 16 8 2.6475 3.1599 -1.1672 17 6 1.9913 1.3064 -2.4723 18 16 2.3827 2.4156 -3.8480 19 6 2.0096 1.3595 -5.2082 20 1 1.6546 0.3551 -5.0305 21 6 2.1710 1.8186 -6.5081 22 7 2.6033 3.0430 -6.7246 23 14 1.7748 0.6993 -7.9500 24 1 0.3468 0.2968 -7.8865 25 1 2.0299 1.4217 -9.2221 26 1 2.6334 -0.5108 -7.8878 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.0643 2.7985 1.1385 33 1 2.5505 1.3452 2.0284 34 1 0.1856 2.0663 1.8407 35 1 0.6994 3.5198 0.9508 36 1 2.1043 3.4319 3.3994 37 1 2.5845 4.4545 5.3447 38 1 -2.5254 5.2484 5.7552 39 1 -2.1424 6.9865 5.7311 40 1 -2.0215 6.0278 4.2363 41 1 2.6212 0.4188 -2.5302 42 1 0.9433 1.0125 -2.5299 43 1 2.7165 3.3637 -7.6330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581176545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:25 Heat of formation + Delta-G solvation = -11.216736 kcal Electronic energy + Delta-G solvation = -26371.149252 eV Core-core repulsion = 22353.361371 eV Total energy + Delta-G solvation = -4017.787882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.33128 -40.11113 -39.48251 -36.30147 -35.11030 -34.81020 -32.72661 -32.44891 -31.25867 -29.92609 -29.13809 -28.05911 -25.54520 -25.07107 -23.40995 -22.92194 -21.74362 -20.99826 -19.33595 -18.61908 -18.14361 -17.76010 -17.00176 -16.86869 -16.43014 -15.83660 -15.54848 -15.33287 -14.82709 -14.79817 -14.04873 -14.01948 -13.94354 -13.77438 -13.59011 -13.46544 -13.37394 -13.12174 -12.82615 -12.60059 -12.41290 -11.94361 -11.91110 -11.70491 -11.57645 -11.10534 -11.06490 -11.03685 -10.78358 -10.49009 -10.31627 -10.20651 -9.84314 -9.48258 -9.42031 -9.07892 -8.77248 -8.26360 -6.53054 -6.23567 -3.94651 0.61187 1.39548 2.33749 2.65871 2.84529 2.94427 3.04587 3.21969 3.25039 3.27952 3.55349 3.63671 3.86474 4.18146 4.39665 4.46073 4.56844 4.69213 4.82526 4.89613 4.97366 5.11171 5.12742 5.14707 5.19693 5.22880 5.29581 5.37085 5.48349 5.55413 5.69961 5.72349 5.78097 5.83919 5.87262 5.97064 6.02569 6.19439 6.52633 7.03048 7.38658 7.57234 7.75854 7.80953 8.32819 8.43944 9.21604 10.83768 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021456 B = 0.001940 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.693655 B =14432.574054 C =14727.818738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 N -0.618 5.618 4 C 0.109 3.891 5 C 0.102 3.898 6 N -0.719 5.719 7 C 0.595 3.405 8 O -0.522 6.522 9 C -0.253 4.253 10 C -0.005 4.005 11 O 0.098 5.902 12 N -0.360 5.360 13 C 0.072 3.928 14 C -0.079 4.079 15 C 0.535 3.465 16 O -0.511 6.511 17 C -0.151 4.151 18 S -0.062 6.062 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.398 0.602 37 H 0.227 0.773 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.087 -3.567 26.163 26.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.017 4.017 3 N -0.354 5.354 4 C -0.016 4.016 5 C -0.022 4.022 6 N -0.372 5.372 7 C 0.381 3.619 8 O -0.398 6.398 9 C -0.260 4.260 10 C -0.088 4.088 11 O 0.039 5.961 12 N -0.067 5.067 13 C -0.091 4.091 14 C -0.137 4.137 15 C 0.323 3.677 16 O -0.385 6.385 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.232 0.768 37 H 0.243 0.757 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.482 -0.943 26.671 26.803 hybrid contribution -0.229 -2.627 -1.449 3.009 sum -2.711 -3.570 25.223 25.618 Atomic orbital electron populations 1.22326 0.95845 1.02410 1.02959 1.21604 0.94600 0.82029 1.03421 1.47897 1.68170 1.14351 1.04999 1.21438 0.96841 0.97269 0.86010 1.21962 0.98797 0.96862 0.84618 1.45639 1.14377 1.52476 1.24666 1.16785 0.84439 0.78245 0.82443 1.90829 1.23584 1.61307 1.64113 1.22357 0.94744 1.08566 1.00367 1.26434 1.00291 0.94850 0.87206 1.84583 1.23913 1.49530 1.38077 1.73706 0.91852 1.19438 1.21746 1.24911 0.99099 0.95337 0.89755 1.20304 0.86296 1.02539 1.04537 1.20415 0.76181 0.86482 0.84607 1.90708 1.43632 1.17396 1.86734 1.23582 1.04909 1.04551 0.97060 1.85408 1.86834 1.17886 0.93362 1.22803 1.51974 1.01429 0.92169 0.90968 1.24996 0.94646 0.95550 0.98386 1.70010 1.42821 1.15610 1.21793 0.86225 0.78972 0.80014 0.80300 1.19917 1.20809 1.19936 0.91726 0.91453 0.92305 0.89632 0.90511 0.89102 0.90192 0.90734 0.90263 0.76759 0.75717 0.89668 0.90298 0.88443 0.89187 0.89072 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 10.24 37.16 0.38 -1.25 16 2 C 0.11 0.99 5.98 -4.04 -0.02 0.96 16 3 N -0.62 -7.60 2.47 -173.69 -0.43 -8.03 16 4 C 0.11 1.03 5.56 -4.04 -0.02 1.01 16 5 C 0.10 1.06 6.00 -4.04 -0.02 1.03 16 6 N -0.72 -5.87 5.55 -61.39 -0.34 -6.21 16 7 C 0.60 6.38 7.81 -12.53 -0.10 6.28 16 8 O -0.52 -7.62 15.69 5.27 0.08 -7.54 16 9 C -0.25 -2.25 6.47 -102.89 -0.67 -2.91 16 10 C -0.01 -0.03 11.85 30.42 0.36 0.33 16 11 O 0.10 0.78 11.06 18.66 0.21 0.98 16 12 N -0.36 -3.64 12.01 34.78 0.42 -3.23 16 13 C 0.07 0.72 7.58 -79.77 -0.60 0.11 16 14 C -0.08 -0.68 10.15 36.01 0.37 -0.31 16 15 C 0.54 9.47 7.69 -10.99 -0.08 9.38 16 16 O -0.51 -10.99 15.44 5.56 0.09 -10.91 16 17 C -0.15 -2.93 4.71 36.00 0.17 -2.76 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.00 9.50 30.94 0.29 -14.71 16 20 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.93 13.22 55.49 0.73 -25.19 16 23 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 27 H 0.06 0.73 7.22 -51.93 -0.37 0.36 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.53 6.26 -51.93 -0.33 0.20 16 30 H 0.09 0.83 6.44 -51.93 -0.33 0.49 16 31 H 0.08 0.50 7.89 -51.93 -0.41 0.09 16 32 H 0.09 0.97 7.42 -51.93 -0.39 0.58 16 33 H 0.08 0.48 7.89 -51.93 -0.41 0.07 16 34 H 0.07 0.78 6.26 -51.93 -0.33 0.45 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.40 1.72 7.66 -40.82 -0.31 1.41 16 37 H 0.23 0.04 7.68 -52.49 -0.40 -0.36 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.94 7.11 -51.93 -0.37 0.57 16 41 H 0.09 1.60 7.40 -51.92 -0.38 1.22 16 42 H 0.09 1.66 7.18 -51.92 -0.37 1.29 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -37.83 381.04 -6.43 -44.26 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.64 Total: -1.33 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -0.05 Total: -0.84 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.38 Total: -42.65 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.37 Total: -17.47 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.83 -6.43 -44.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581176545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.045 kcal (2) G-P(sol) polarization free energy of solvation -37.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds