Wall clock time and date at job start Wed Apr 1 2020 00:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34417 * 124.35146 * 2 1 4 4 O 1.21279 * 124.94464 * 359.59579 * 3 2 1 5 5 C 1.51283 * 110.11678 * 179.57049 * 3 2 1 6 6 C 1.54627 * 104.19534 * 343.74279 * 5 3 2 7 7 C 1.46769 * 124.34688 * 179.97438 * 2 1 3 8 8 H 1.08998 * 110.24703 * 78.04283 * 7 2 1 9 9 C 1.50699 * 110.24426 * 316.03863 * 7 2 1 10 10 O 1.21280 * 120.00395 * 343.94965 * 9 7 2 11 11 N 1.34784 * 119.99653 * 163.95214 * 9 7 2 12 12 C 1.47064 * 136.05665 * 359.63044 * 11 9 7 13 13 C 1.53757 * 87.88479 * 152.96280 * 12 11 9 14 14 N 1.46505 * 114.08541 * 139.78244 * 13 12 11 15 15 C 1.34768 * 120.00061 * 111.56068 * 14 13 12 16 16 O 1.21286 * 120.00633 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99926 * 179.97438 * 15 14 13 18 18 S 1.81000 * 109.47306 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00221 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99851 * 359.97438 * 19 18 17 21 21 C 1.38794 * 119.99896 * 180.02562 * 19 18 17 22 22 N 1.31637 * 119.99799 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00324 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47226 * 90.00034 * 23 21 19 25 25 H 1.48501 * 109.47579 * 210.00117 * 23 21 19 26 26 H 1.48506 * 109.47178 * 330.00131 * 23 21 19 27 27 C 1.47067 * 136.05501 * 180.02562 * 11 9 7 28 28 H 1.09003 * 109.46705 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46487 * 119.97968 * 1 2 3 30 30 H 1.08995 * 109.47234 * 239.97605 * 1 2 3 31 31 H 1.09005 * 110.48620 * 225.07199 * 5 3 2 32 32 H 1.08997 * 110.60275 * 102.47583 * 5 3 2 33 33 H 1.09000 * 110.97423 * 142.92020 * 6 5 3 34 34 H 1.08997 * 110.97122 * 266.68394 * 6 5 3 35 35 H 1.08997 * 113.46982 * 267.69611 * 12 11 9 36 36 H 1.08999 * 113.46693 * 38.13477 * 12 11 9 37 37 H 1.09005 * 114.57740 * 272.65756 * 13 12 11 38 38 H 0.97000 * 119.99369 * 291.55640 * 14 13 12 39 39 H 1.09008 * 109.47104 * 299.99756 * 17 15 14 40 40 H 1.09000 * 109.47582 * 60.00052 * 17 15 14 41 41 H 0.97000 * 119.99764 * 180.02562 * 22 21 19 42 42 H 1.09000 * 113.46746 * 321.86105 * 27 11 9 43 43 H 1.09000 * 113.46754 * 92.30986 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7947 2.2442 -0.0070 5 6 3.6898 0.7378 0.0106 6 6 3.7009 -0.7486 0.4367 7 6 2.2931 -1.2118 0.0005 8 1 2.3310 -1.6432 -0.9997 9 6 1.7470 -2.2161 0.9825 10 8 0.9518 -1.8663 1.8288 11 7 2.1424 -3.5031 0.9202 12 6 3.0479 -4.2928 0.0721 13 6 3.2465 -5.2414 1.2658 14 7 3.2901 -6.6598 0.9015 15 6 4.4411 -7.3507 1.0196 16 8 5.4411 -6.7983 1.4269 17 6 4.4858 -8.8099 0.6454 18 16 6.1576 -9.4502 0.9121 19 6 5.9279 -11.1237 0.4105 20 1 4.9587 -11.4573 0.0703 21 6 6.9923 -12.0134 0.4537 22 7 6.8206 -13.2637 0.0795 23 14 8.6685 -11.4366 1.0428 24 1 8.7704 -11.6297 2.5116 25 1 9.7295 -12.2244 0.3653 26 1 8.8384 -9.9971 0.7198 27 6 1.8529 -4.7371 1.6661 28 1 -0.3633 1.0277 0.0005 29 1 -0.3632 -0.5136 -0.8902 30 1 -0.3633 -0.5142 0.8897 31 1 4.2325 1.3460 0.7344 32 1 4.1220 0.8529 -0.9834 33 1 4.4754 -1.3012 -0.0952 34 1 3.8263 -0.8444 1.5152 35 1 2.5495 -4.7614 -0.7764 36 1 3.9530 -3.7567 -0.2134 37 1 4.0421 -4.9479 1.9507 38 1 2.4904 -7.1015 0.5755 39 1 3.7806 -9.3653 1.2639 40 1 4.2166 -8.9242 -0.4046 41 1 7.5644 -13.8856 0.1100 42 1 1.7397 -4.5795 2.7387 43 1 1.0397 -5.3227 1.2373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581939316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:17 Heat of formation + Delta-G solvation = -51.473617 kcal Electronic energy + Delta-G solvation = -26447.335576 eV Core-core repulsion = 22427.802025 eV Total energy + Delta-G solvation = -4019.533551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.57941 -40.60807 -39.21434 -38.14151 -36.55071 -34.06282 -33.27438 -32.50858 -30.73084 -29.34731 -27.70179 -27.07136 -26.48927 -25.68896 -23.31798 -22.26540 -20.84666 -20.23361 -19.44203 -18.19919 -17.94094 -17.22346 -17.10685 -16.62959 -16.51260 -16.33527 -15.34933 -15.26621 -15.03761 -14.86910 -14.53947 -14.35342 -13.98124 -13.87263 -13.63471 -13.43698 -13.27602 -13.11762 -12.95356 -12.86377 -12.75664 -12.44217 -12.33391 -12.23368 -11.69728 -11.52650 -11.34231 -11.07331 -10.72917 -10.59929 -10.26046 -9.93909 -9.74783 -9.38462 -9.24581 -9.13545 -9.06928 -8.60164 -7.01083 -6.35771 -4.08739 1.84066 1.97124 2.20142 2.55415 2.68161 2.70148 3.20463 3.27864 3.43674 3.53502 3.58030 3.74305 3.87105 3.97427 4.26101 4.28900 4.33400 4.38667 4.57318 4.64752 4.73382 4.83639 4.90842 4.94838 5.03318 5.08183 5.11063 5.12243 5.18186 5.19111 5.26824 5.34289 5.52549 5.60492 5.63315 5.88767 5.91421 6.23113 6.57496 7.06810 7.33449 7.50702 7.70858 7.87019 8.23917 8.34498 9.10085 10.73323 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029593 B = 0.001826 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.939108 B =15333.980525 C =15918.341360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.603 5.603 3 C 0.520 3.480 4 O -0.528 6.528 5 C -0.153 4.153 6 C -0.121 4.121 7 C 0.121 3.879 8 H 0.106 0.894 9 C 0.542 3.458 10 O -0.523 6.523 11 N -0.641 5.641 12 C 0.079 3.921 13 C 0.119 3.881 14 N -0.725 5.725 15 C 0.536 3.464 16 O -0.513 6.513 17 C -0.126 4.126 18 S -0.140 6.140 19 C -0.523 4.523 20 H 0.089 0.911 21 C 0.096 3.904 22 N -0.879 5.879 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.096 3.904 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.135 0.865 38 H 0.404 0.596 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.271 0.729 42 H 0.088 0.912 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.855 22.353 -2.480 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.337 5.337 3 C 0.308 3.692 4 O -0.404 6.404 5 C -0.193 4.193 6 C -0.159 4.159 7 C 0.013 3.987 8 H 0.124 0.876 9 C 0.330 3.670 10 O -0.398 6.398 11 N -0.378 5.378 12 C -0.046 4.046 13 C 0.012 3.988 14 N -0.379 5.379 15 C 0.322 3.678 16 O -0.387 6.387 17 C -0.276 4.276 18 S 0.086 5.914 19 C -0.671 4.671 20 H 0.107 0.893 21 C -0.113 4.113 22 N -0.515 5.515 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.028 4.028 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.152 0.848 38 H 0.239 0.761 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.933 24.130 -1.360 26.130 hybrid contribution -0.986 -1.200 -0.562 1.652 sum -10.919 22.930 -1.922 25.470 Atomic orbital electron populations 1.21787 0.77290 1.03946 1.02619 1.47857 1.06887 1.05619 1.73330 1.20864 0.89280 0.84134 0.74907 1.90741 1.78668 1.20734 1.50290 1.22373 0.94702 0.96871 1.05368 1.22620 0.93831 0.95755 1.03697 1.21535 0.92059 0.85964 0.99192 0.87632 1.20180 0.81001 0.80572 0.85265 1.90725 1.33962 1.77926 1.37201 1.49251 1.46759 1.05960 1.35812 1.23806 0.93679 0.91156 0.95945 1.22692 0.98295 0.81087 0.96771 1.45797 1.13342 1.09578 1.69174 1.20376 0.82474 0.88461 0.76478 1.90718 1.33702 1.70476 1.43760 1.23292 1.05417 0.93587 1.05338 1.84814 1.07494 1.11581 1.87530 1.22295 1.01337 0.92382 1.51057 0.89332 1.24720 0.98930 0.94026 0.93642 1.69937 1.32719 1.03360 1.45487 0.86735 0.83517 0.81547 0.80033 1.19191 1.19915 1.15931 1.23402 0.97284 0.82826 0.99281 0.89821 0.92385 0.89977 0.87310 0.87105 0.87764 0.89148 0.88769 0.89267 0.84774 0.76078 0.88264 0.88225 0.91878 0.89323 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 10.49 59.85 0.63 1.35 16 2 N -0.60 -5.34 3.01 -174.01 -0.52 -5.87 16 3 C 0.52 5.16 8.02 -10.86 -0.09 5.08 16 4 O -0.53 -7.34 17.35 5.56 0.10 -7.24 16 5 C -0.15 -0.86 6.86 -26.74 -0.18 -1.04 16 6 C -0.12 -0.57 6.68 -25.10 -0.17 -0.74 16 7 C 0.12 0.78 3.54 -68.16 -0.24 0.54 16 8 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 9 C 0.54 4.73 6.98 -10.98 -0.08 4.66 16 10 O -0.52 -6.55 15.11 5.56 0.08 -6.47 16 11 N -0.64 -4.45 3.69 -185.06 -0.68 -5.13 16 12 C 0.08 0.42 8.24 -8.37 -0.07 0.35 16 13 C 0.12 0.87 4.63 -67.67 -0.31 0.56 16 14 N -0.72 -6.30 5.38 -53.47 -0.29 -6.59 16 15 C 0.54 7.66 7.85 -10.99 -0.09 7.57 16 16 O -0.51 -9.32 15.45 5.55 0.09 -9.24 16 17 C -0.13 -2.09 6.16 36.01 0.22 -1.87 16 18 S -0.14 -3.29 18.55 -107.50 -1.99 -5.28 16 19 C -0.52 -14.28 10.04 30.94 0.31 -13.97 16 20 H 0.09 2.52 8.03 -52.49 -0.42 2.10 16 21 C 0.10 2.69 5.50 -17.43 -0.10 2.59 16 22 N -0.88 -25.60 13.97 55.49 0.78 -24.83 16 23 Si 0.86 20.85 27.74 -169.99 -4.71 16.14 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.24 -5.67 6.74 56.52 0.38 -5.29 16 27 C 0.10 0.61 8.38 -8.49 -0.07 0.54 16 28 H 0.08 0.75 7.53 -51.93 -0.39 0.36 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.81 6.08 -51.93 -0.32 0.49 16 31 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 0.51 7.90 -51.93 -0.41 0.10 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.13 1.23 7.45 -51.93 -0.39 0.85 16 38 H 0.40 2.35 8.75 -40.82 -0.36 1.99 16 39 H 0.10 1.53 8.14 -51.91 -0.42 1.11 16 40 H 0.10 1.51 8.14 -51.92 -0.42 1.09 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.44 8.13 -51.93 -0.42 0.01 16 LS Contribution 378.17 15.07 5.70 5.70 Total: -1.00 -37.63 378.17 -7.78 -45.41 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.09 Total: -2.21 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -0.23 Total: 5.61 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.72 Total: -42.41 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.27 Total: -22.95 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.71 Total: 16.14 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -1.99 Total: -5.28 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.63 -7.78 -45.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581939316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.065 kcal (2) G-P(sol) polarization free energy of solvation -37.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds