Wall clock time and date at job start Tue Mar 31 2020 23:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36440 * 124.85352 * 2 1 4 4 C 1.34490 * 108.85859 * 179.97438 * 3 2 1 5 5 C 1.46688 * 106.33116 * 0.02562 * 4 3 2 6 6 C 1.47260 * 126.94288 * 179.97438 * 5 4 3 7 7 O 1.21622 * 120.00178 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99793 * 0.02562 * 6 5 4 9 9 C 1.46497 * 119.99638 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46900 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.47164 * 60.00014 * 10 9 8 12 12 O 1.42903 * 109.47171 * 299.99748 * 10 9 8 13 13 C 1.53003 * 109.47376 * 180.02562 * 10 9 8 14 14 N 1.46494 * 109.47283 * 185.00021 * 13 10 9 15 15 C 1.34779 * 119.99921 * 179.97438 * 14 13 10 16 16 O 1.21281 * 120.00109 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99840 * 179.97438 * 15 14 13 18 18 S 1.80996 * 109.47109 * 180.02562 * 17 15 14 19 19 C 1.76197 * 100.00355 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99942 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00190 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00277 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99904 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47069 * 90.00667 * 23 21 19 25 25 H 1.48502 * 109.47299 * 210.00539 * 23 21 19 26 26 H 1.48501 * 109.47224 * 330.00519 * 23 21 19 27 27 C 1.34662 * 124.84938 * 180.26830 * 2 1 3 28 28 H 1.08992 * 109.47426 * 90.01885 * 1 2 3 29 29 H 1.09006 * 109.47481 * 210.02454 * 1 2 3 30 30 H 1.09007 * 109.46589 * 330.02014 * 1 2 3 31 31 H 1.08005 * 125.57206 * 359.96404 * 3 2 1 32 32 H 1.08004 * 126.83511 * 180.02562 * 4 3 2 33 33 H 0.96996 * 120.00052 * 0.02562 * 8 6 5 34 34 H 1.08999 * 109.47200 * 60.00094 * 9 8 6 35 35 H 1.08997 * 109.47487 * 300.00148 * 9 8 6 36 36 H 0.96700 * 114.00311 * 300.00378 * 12 10 9 37 37 H 1.09005 * 109.46682 * 304.99749 * 13 10 9 38 38 H 1.08999 * 109.47221 * 64.99915 * 13 10 9 39 39 H 0.96999 * 120.00388 * 359.97438 * 14 13 10 40 40 H 1.08992 * 109.47506 * 300.00283 * 17 15 14 41 41 H 1.08999 * 109.46876 * 60.00368 * 17 15 14 42 42 H 0.97001 * 120.00624 * 179.97438 * 22 21 19 43 43 H 1.08004 * 125.80265 * 0.06109 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1196 0.0000 4 6 3.5375 0.7491 0.0006 5 6 3.5461 -0.7178 0.0003 6 6 4.7283 -1.5959 0.0002 7 8 4.5884 -2.8041 -0.0005 8 7 5.9653 -1.0607 0.0009 9 6 7.1413 -1.9344 0.0014 10 6 8.4108 -1.0805 0.0027 11 1 8.4249 -0.4518 0.8930 12 8 8.4311 -0.2552 -1.1637 13 6 9.6391 -1.9928 0.0026 14 7 10.8515 -1.1796 0.1242 15 6 12.0615 -1.7728 0.1463 16 8 12.1466 -2.9800 0.0659 17 6 13.3087 -0.9362 0.2709 18 16 14.7617 -2.0154 0.2709 19 6 16.0381 -0.8104 0.4238 20 1 15.7863 0.2380 0.4855 21 6 17.3670 -1.2086 0.4662 22 7 17.6739 -2.4864 0.3916 23 14 18.7201 0.0690 0.6276 24 1 19.0050 0.3094 2.0651 25 1 19.9491 -0.4238 -0.0448 26 1 18.2821 1.3371 -0.0091 27 6 2.2345 -1.1051 -0.0052 28 1 -0.3634 -0.0003 -1.0276 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5136 31 1 1.8828 2.1373 -0.0006 32 1 4.3982 1.4016 0.0011 33 1 6.0768 -0.0972 0.0018 34 1 7.1270 -2.5634 -0.8887 35 1 7.1261 -2.5636 0.8912 36 1 8.4201 -0.7488 -1.9951 37 1 9.5789 -2.6833 0.8438 38 1 9.6723 -2.5573 -0.9293 39 1 10.7835 -0.2141 0.1889 40 1 13.3691 -0.2463 -0.5707 41 1 13.2755 -0.3710 1.2024 42 1 18.6027 -2.7647 0.4208 43 1 1.8766 -2.1241 -0.0109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001582988183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:32 Heat of formation + Delta-G solvation = -76.847178 kcal Electronic energy + Delta-G solvation = -25241.547326 eV Core-core repulsion = 21220.913495 eV Total energy + Delta-G solvation = -4020.633831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65554 -39.77154 -39.12909 -37.79695 -34.55706 -34.14721 -33.27658 -32.41477 -30.82566 -29.66732 -29.01360 -27.27700 -25.62837 -25.22533 -22.73712 -22.21168 -20.64376 -20.31867 -19.94008 -18.44914 -17.94001 -17.22046 -16.66882 -16.37193 -16.13498 -15.92254 -15.52709 -15.23052 -15.14393 -14.78895 -14.61679 -14.57871 -13.96154 -13.79475 -13.62572 -13.55995 -13.14749 -13.05843 -13.03488 -12.81744 -12.55419 -12.48243 -12.45278 -11.73674 -11.41256 -11.05006 -11.01036 -10.77497 -10.61443 -10.16009 -9.79990 -9.41141 -9.38989 -9.06338 -9.05655 -8.91688 -8.77089 -8.22160 -6.48569 -6.20214 -3.90786 1.40493 1.98022 2.29209 2.85781 3.09661 3.14469 3.23692 3.29766 3.30769 3.34662 3.70891 4.01963 4.15384 4.21894 4.38955 4.42539 4.49528 4.51581 4.52923 4.67949 4.78248 4.86615 5.01583 5.14982 5.17890 5.22414 5.39048 5.45134 5.53343 5.63427 5.68569 5.78311 5.91258 6.14153 6.16201 6.28604 6.54327 6.57071 6.72302 7.19783 7.33795 7.61060 7.70396 8.08670 8.36715 8.60851 9.25136 10.87246 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.038925 B = 0.001422 C = 0.001382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.155080 B =19679.387015 C =20257.427232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.448 5.448 3 C -0.018 4.018 4 C -0.168 4.168 5 C -0.236 4.236 6 C 0.591 3.409 7 O -0.554 6.554 8 N -0.720 5.720 9 C 0.092 3.908 10 C 0.087 3.913 11 H 0.113 0.887 12 O -0.555 6.555 13 C 0.093 3.907 14 N -0.733 5.733 15 C 0.532 3.468 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.075 3.925 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.167 0.833 32 H 0.147 0.853 33 H 0.405 0.595 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.381 0.619 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.402 0.598 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.268 0.732 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.227 9.729 -1.139 37.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.123 5.123 3 C -0.144 4.144 4 C -0.192 4.192 5 C -0.246 4.246 6 C 0.380 3.620 7 O -0.434 6.434 8 N -0.372 5.372 9 C -0.033 4.033 10 C 0.027 3.973 11 H 0.131 0.869 12 O -0.361 6.361 13 C -0.032 4.032 14 N -0.389 5.389 15 C 0.318 3.682 16 O -0.392 6.392 17 C -0.303 4.303 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.060 4.060 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.185 0.815 32 H 0.164 0.836 33 H 0.240 0.760 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.230 0.770 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.237 0.763 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -36.380 7.202 -0.837 37.095 hybrid contribution 0.737 2.694 -0.138 2.796 sum -35.643 9.897 -0.975 37.004 Atomic orbital electron populations 1.22148 0.76729 1.04808 1.03697 1.43651 1.06896 1.05947 1.55852 1.21780 0.90594 0.91350 1.10677 1.22067 0.96291 0.93140 1.07680 1.20300 0.92466 0.93354 1.18465 1.17374 0.82313 0.86975 0.75295 1.90787 1.86626 1.14762 1.51201 1.45579 1.04870 1.10598 1.76133 1.21922 0.84271 0.93266 1.03868 1.22396 0.92018 0.92705 0.90217 0.86911 1.86576 1.96762 1.36792 1.15993 1.21829 0.83973 0.93971 1.03476 1.45849 1.05052 1.10546 1.77412 1.20333 0.83989 0.88673 0.75230 1.90710 1.86517 1.14478 1.47525 1.23522 0.98172 1.03732 1.04917 1.85396 0.92524 1.09432 1.96048 1.22873 0.92708 0.94408 1.58416 0.90909 1.24985 0.98032 0.95960 0.94558 1.70016 1.19079 1.14447 1.46771 0.86170 0.80287 0.80656 0.78393 1.20277 1.20753 1.19690 1.21810 0.89826 0.91828 1.02562 0.90527 0.89484 0.89475 0.81540 0.83561 0.75966 0.90640 0.90043 0.77040 0.90336 0.90902 0.76343 0.89146 0.89194 0.92184 0.80794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.10 11.03 59.85 0.66 0.76 16 2 N -0.45 -2.41 3.09 -124.53 -0.38 -2.79 16 3 C -0.02 -0.10 11.34 -16.83 -0.19 -0.29 16 4 C -0.17 -1.14 10.56 -37.50 -0.40 -1.54 16 5 C -0.24 -2.14 6.29 -103.35 -0.65 -2.79 16 6 C 0.59 6.47 7.81 -12.59 -0.10 6.38 16 7 O -0.55 -8.05 16.91 5.26 0.09 -7.96 16 8 N -0.72 -6.00 5.44 -61.44 -0.33 -6.34 16 9 C 0.09 0.74 5.34 -4.04 -0.02 0.72 16 10 C 0.09 0.64 3.09 -26.73 -0.08 0.55 16 11 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 12 O -0.56 -4.14 13.03 -35.23 -0.46 -4.60 16 13 C 0.09 0.97 5.31 -4.04 -0.02 0.95 16 14 N -0.73 -9.43 5.50 -60.29 -0.33 -9.76 16 15 C 0.53 9.83 7.85 -10.98 -0.09 9.75 16 16 O -0.52 -11.73 15.86 5.56 0.09 -11.64 16 17 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 20 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 23 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.08 0.57 11.12 -16.84 -0.19 0.39 16 28 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.09 0.04 8.13 -51.93 -0.42 -0.38 16 30 H 0.09 0.00 8.13 -51.93 -0.42 -0.42 16 31 H 0.17 0.42 8.06 -52.48 -0.42 0.00 16 32 H 0.15 0.73 7.70 -52.48 -0.40 0.32 16 33 H 0.41 2.69 7.47 -40.82 -0.30 2.38 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.38 2.09 9.05 45.56 0.41 2.51 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.40 4.22 8.47 -40.82 -0.35 3.88 16 40 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.17 1.13 8.06 -52.48 -0.42 0.70 16 LS Contribution 391.70 15.07 5.90 5.90 Total: -1.00 -39.49 391.70 -7.84 -47.34 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.26 Total: 3.80 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.65 Total: -0.99 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.32 Total: -44.43 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.28 Total: -24.20 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -39.49 -7.84 -47.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582988183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.512 kcal (2) G-P(sol) polarization free energy of solvation -39.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds