Wall clock time and date at job start Tue Mar 31 2020 23:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47065 * 2 1 4 4 C 1.50697 * 109.47677 * 239.99354 * 2 1 3 5 5 H 1.08001 * 120.00254 * 240.00032 * 4 2 1 6 6 C 1.37884 * 119.99611 * 60.00047 * 4 2 1 7 7 N 1.31513 * 119.99535 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 120.00017 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.47174 * 269.99791 * 8 6 4 10 10 H 1.48499 * 109.47578 * 29.99714 * 8 6 4 11 11 H 1.48494 * 109.47049 * 150.00175 * 8 6 4 12 12 C 1.50701 * 109.46877 * 119.99501 * 2 1 3 13 13 O 1.21280 * 120.00221 * 109.52210 * 12 2 1 14 14 N 1.34777 * 119.99914 * 289.52501 * 12 2 1 15 15 C 1.46504 * 120.00380 * 6.79770 * 14 12 2 16 16 C 1.52998 * 109.47165 * 95.87722 * 15 14 12 17 17 C 1.50700 * 109.47368 * 184.73638 * 16 15 14 18 18 O 1.20832 * 119.99673 * 0.02562 * 17 16 15 19 19 O 1.34227 * 120.00027 * 180.02562 * 17 16 15 20 20 C 1.46500 * 120.00209 * 186.79768 * 14 12 2 21 21 C 1.50705 * 109.47206 * 89.99749 * 20 14 12 22 22 C 1.38253 * 119.99862 * 104.99958 * 21 20 14 23 23 C 1.38222 * 120.07251 * 180.02562 * 22 21 20 24 24 C 1.38262 * 120.06625 * 359.97438 * 23 22 21 25 25 C 1.38363 * 119.99816 * 0.02562 * 24 23 22 26 26 F 1.35103 * 120.03194 * 180.02562 * 25 24 23 27 27 C 1.38367 * 120.00122 * 284.73238 * 21 20 14 28 28 F 1.35102 * 120.03674 * 359.97425 * 27 21 20 29 29 H 1.09003 * 109.47003 * 187.13421 * 1 2 3 30 30 H 1.08995 * 109.47435 * 307.13975 * 1 2 3 31 31 H 1.09005 * 109.46855 * 67.14299 * 1 2 3 32 32 H 0.97001 * 119.99766 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.47423 * 215.88370 * 15 14 12 34 34 H 1.09000 * 109.46462 * 335.88049 * 15 14 12 35 35 H 1.09003 * 109.46947 * 304.73845 * 16 15 14 36 36 H 1.09001 * 109.46916 * 64.73538 * 16 15 14 37 37 H 0.96701 * 116.99844 * 180.02562 * 19 17 16 38 38 H 1.08999 * 109.47544 * 209.99800 * 20 14 12 39 39 H 1.08997 * 109.47246 * 330.00346 * 20 14 12 40 40 H 1.08001 * 119.97062 * 0.02562 * 22 21 20 41 41 H 1.07999 * 119.96570 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.99586 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 2.6534 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4827 7 7 2.1375 -0.8599 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8742 -2.6995 10 1 0.8491 2.1772 -1.4924 11 1 0.9774 1.9950 -3.9071 12 6 2.0323 -0.7103 1.2305 13 8 2.5653 -1.7950 1.1295 14 7 1.8891 -0.1402 2.4434 15 6 1.1157 1.0960 2.5851 16 6 -0.3170 0.7564 3.0011 17 6 -1.1427 2.0167 3.0339 18 8 -0.6372 3.0776 2.7529 19 8 -2.4396 1.9606 3.3753 20 6 2.5068 -0.7566 3.6201 21 6 3.8973 -0.2054 3.8043 22 6 4.1492 0.7149 4.8048 23 6 5.4238 1.2218 4.9747 24 6 6.4498 0.8091 4.1449 25 6 6.2009 -0.1119 3.1427 26 9 7.2030 -0.5161 2.3317 27 6 4.9231 -0.6246 2.9757 28 9 4.6791 -1.5284 2.0016 29 1 -0.3633 -1.0197 0.1276 30 1 -0.3634 0.6204 0.8192 31 1 -0.3633 0.3992 -0.9470 32 1 1.9029 -0.5288 -4.4374 33 1 1.5752 1.7269 3.3459 34 1 1.1015 1.6267 1.6331 35 1 -0.7479 0.0583 2.2834 36 1 -0.3094 0.3011 3.9914 37 1 -2.9283 2.7950 3.3818 38 1 1.9080 -0.5343 4.5033 39 1 2.5597 -1.8361 3.4793 40 1 3.3492 1.0383 5.4543 41 1 5.6187 1.9404 5.7571 42 1 7.4454 1.2055 4.2789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592211227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:06 Heat of formation + Delta-G solvation = -172.799031 kcal Electronic energy + Delta-G solvation = -31038.268780 eV Core-core repulsion = 26427.341026 eV Total energy + Delta-G solvation = -4610.927754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.20508 -48.20682 -40.54843 -39.67774 -38.67551 -36.40219 -35.53248 -34.14309 -32.52273 -31.03366 -30.63122 -30.29433 -26.76589 -25.19917 -24.85157 -22.91533 -22.79439 -21.58886 -21.20081 -18.71638 -18.12596 -17.61004 -17.25844 -16.91292 -16.89209 -16.77819 -16.41389 -16.12400 -15.56587 -15.45711 -15.01030 -14.78096 -14.53251 -14.41049 -14.13146 -13.93420 -13.44312 -13.41881 -13.13631 -12.90872 -12.63997 -12.38785 -12.28617 -12.10956 -11.90702 -11.70102 -11.59460 -11.55959 -11.27312 -11.23462 -10.93057 -10.75339 -10.56804 -10.30351 -9.60000 -9.17073 -9.08171 -8.71757 -8.62823 -8.56039 -8.45210 -6.04001 -4.04081 0.85332 0.93571 2.06486 2.73743 3.17679 3.22740 3.33197 3.37020 3.48571 3.64646 3.84675 4.38398 4.44380 4.48050 4.56662 4.69340 4.81313 4.90193 4.92167 5.07440 5.19842 5.24467 5.34062 5.52701 5.56627 5.64199 5.74881 5.78082 5.86234 5.93653 6.00851 6.07086 6.12885 6.26436 6.33750 6.37834 6.63980 6.73803 6.83355 7.11110 7.51058 7.72315 7.86344 8.53561 8.99250 9.15762 9.54619 11.08864 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.008412 B = 0.005423 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3327.666004 B = 5161.937083 C = 7543.827505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.001 4.001 3 H 0.049 0.951 4 C -0.504 4.504 5 H 0.094 0.906 6 C 0.072 3.928 7 N -0.894 5.894 8 Si 0.879 3.121 9 H -0.278 1.278 10 H -0.266 1.266 11 H -0.295 1.295 12 C 0.526 3.474 13 O -0.502 6.502 14 N -0.626 5.626 15 C 0.122 3.878 16 C -0.145 4.145 17 C 0.483 3.517 18 O -0.513 6.513 19 O -0.518 6.518 20 C 0.154 3.846 21 C -0.117 4.117 22 C -0.092 4.092 23 C -0.111 4.111 24 C -0.127 4.127 25 C 0.059 3.941 26 F -0.129 7.129 27 C 0.093 3.907 28 F -0.094 7.094 29 H 0.058 0.942 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.264 0.736 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.108 0.892 37 H 0.409 0.591 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.855 6.866 22.005 23.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.023 4.023 3 H 0.066 0.934 4 C -0.542 4.542 5 H 0.112 0.888 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.709 3.291 9 H -0.205 1.205 10 H -0.191 1.191 11 H -0.222 1.222 12 C 0.316 3.684 13 O -0.373 6.373 14 N -0.362 5.362 15 C -0.002 4.002 16 C -0.184 4.184 17 C 0.325 3.675 18 O -0.401 6.401 19 O -0.330 6.330 20 C 0.031 3.969 21 C -0.119 4.119 22 C -0.111 4.111 23 C -0.129 4.129 24 C -0.146 4.146 25 C 0.039 3.961 26 F -0.107 7.107 27 C 0.072 3.928 28 F -0.072 7.072 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.141 0.859 36 H 0.126 0.874 37 H 0.268 0.732 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.156 6.077 21.534 22.405 hybrid contribution -0.792 1.320 -0.576 1.644 sum -1.948 7.397 20.958 22.311 Atomic orbital electron populations 1.22460 0.97583 1.01196 1.00160 1.19298 0.93092 0.97386 0.92509 0.93362 1.20914 1.32117 1.14023 0.87111 0.88833 1.24966 0.95822 0.96424 0.95796 1.69880 1.45373 1.40071 0.97854 0.86994 0.80720 0.84012 0.77375 1.20489 1.19104 1.22197 1.21443 0.77606 0.85792 0.83525 1.90632 1.41027 1.20399 1.85218 1.48250 1.53577 1.26842 1.07555 1.21322 0.87800 0.86530 1.04559 1.22145 0.95695 0.94368 1.06185 1.23381 0.80485 0.91380 0.72219 1.90753 1.72329 1.32199 1.44773 1.84545 1.24344 1.42590 1.81529 1.20171 0.87968 0.99574 0.89228 1.20390 0.96146 0.99204 0.96198 1.20986 0.97386 0.95570 0.97161 1.20977 0.92163 1.00257 0.99484 1.21066 1.01355 0.97362 0.94820 1.17805 0.84434 1.00027 0.93834 1.91540 1.58597 1.89342 1.71235 1.17788 0.92319 0.92575 0.90144 1.91800 1.94347 1.62764 1.58318 0.92270 0.94328 0.92923 0.92566 0.90079 0.88065 0.85912 0.87414 0.73225 0.89379 0.88252 0.84570 0.84513 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 7.68 37.16 0.29 -2.90 16 2 C 0.00 -0.03 1.39 -92.92 -0.13 -0.16 16 3 H 0.05 1.13 6.19 -51.92 -0.32 0.81 16 4 C -0.50 -14.62 8.95 -34.44 -0.31 -14.93 16 5 H 0.09 3.10 7.05 -52.49 -0.37 2.73 16 6 C 0.07 2.09 5.45 -17.82 -0.10 2.00 16 7 N -0.89 -27.92 13.96 55.43 0.77 -27.14 16 8 Si 0.88 21.67 24.42 -169.99 -4.15 17.51 16 9 H -0.28 -6.58 6.81 56.52 0.39 -6.20 16 10 H -0.27 -6.18 6.53 56.52 0.37 -5.82 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 12 C 0.53 11.15 6.55 -10.98 -0.07 11.08 16 13 O -0.50 -12.39 12.16 5.56 0.07 -12.32 16 14 N -0.63 -9.72 2.46 -175.06 -0.43 -10.15 16 15 C 0.12 1.59 4.22 -4.04 -0.02 1.57 16 16 C -0.15 -1.53 5.19 -27.88 -0.14 -1.68 16 17 C 0.48 5.37 8.24 36.01 0.30 5.67 16 18 O -0.51 -7.25 16.68 -18.75 -0.31 -7.56 16 19 O -0.52 -4.47 13.42 -39.25 -0.53 -5.00 16 20 C 0.15 1.94 5.43 -5.19 -0.03 1.92 16 21 C -0.12 -1.52 5.47 -104.57 -0.57 -2.09 16 22 C -0.09 -0.86 9.66 -39.58 -0.38 -1.24 16 23 C -0.11 -0.96 10.04 -39.58 -0.40 -1.36 16 24 C -0.13 -1.36 10.02 -39.53 -0.40 -1.75 16 25 C 0.06 0.88 7.31 -39.37 -0.29 0.59 16 26 F -0.13 -2.13 17.18 2.25 0.04 -2.09 16 27 C 0.09 1.52 7.20 -39.37 -0.28 1.24 16 28 F -0.09 -1.99 13.29 2.25 0.03 -1.96 16 29 H 0.06 1.18 8.13 -51.93 -0.42 0.75 16 30 H 0.04 0.63 3.52 -51.93 -0.18 0.45 16 31 H 0.05 1.15 3.22 -51.93 -0.17 0.98 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 34 H 0.10 1.58 5.13 -51.93 -0.27 1.32 16 35 H 0.12 1.42 5.85 -51.93 -0.30 1.12 16 36 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.41 1.85 9.10 45.56 0.41 2.27 16 38 H 0.09 0.73 7.88 -51.93 -0.41 0.32 16 39 H 0.10 1.44 7.27 -51.93 -0.38 1.06 16 40 H 0.14 0.84 8.00 -52.49 -0.42 0.42 16 41 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 348.86 15.07 5.26 5.26 Total: -1.00 -37.43 348.86 -5.49 -42.92 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.70 Total: 2.56 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -2.53 Total: -2.04 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.34 Total: -37.29 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.77 Total: -24.88 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.07 Total: -4.05 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.15 Total: 17.51 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.43 -5.49 -42.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.879 kcal (2) G-P(sol) polarization free energy of solvation -37.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds