Wall clock time and date at job start Tue Mar 31 2020 23:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47425 * 2 1 4 4 C 1.53003 * 109.47199 * 120.00268 * 2 1 3 5 5 C 1.50698 * 109.46681 * 294.99761 * 4 2 1 6 6 O 1.21289 * 120.00351 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99717 * 179.72145 * 5 4 2 8 8 C 1.37091 * 120.00229 * 0.02562 * 7 5 4 9 9 H 1.07999 * 120.00184 * 326.01091 * 8 7 5 10 10 C 1.38952 * 120.00353 * 146.00232 * 8 7 5 11 11 N 1.31415 * 120.00068 * 337.82736 * 10 8 7 12 12 Si 1.86808 * 120.00040 * 157.81596 * 10 8 7 13 13 H 1.48500 * 109.46969 * 60.00577 * 12 10 8 14 14 H 1.48498 * 109.46809 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46937 * 300.00709 * 12 10 8 16 16 C 1.46507 * 120.00038 * 179.97438 * 7 5 4 17 17 C 1.52999 * 109.46823 * 84.54203 * 16 7 5 18 18 C 1.50692 * 109.47190 * 179.97438 * 17 16 7 19 19 O 1.20824 * 120.00084 * 0.02562 * 18 17 16 20 20 O 1.34223 * 120.00299 * 180.02562 * 18 17 16 21 21 C 1.50706 * 109.47093 * 240.00042 * 2 1 3 22 22 C 1.38230 * 119.98686 * 299.99884 * 21 2 1 23 23 C 1.38187 * 120.05100 * 180.02562 * 22 21 2 24 24 C 1.38497 * 120.02436 * 359.97438 * 23 22 21 25 25 F 1.35093 * 120.01089 * 179.97438 * 24 23 22 26 26 C 1.38400 * 119.97324 * 359.97438 * 24 23 22 27 27 C 1.38441 * 119.95010 * 359.77150 * 26 24 23 28 28 F 1.35102 * 120.01197 * 180.22884 * 27 26 24 29 29 H 1.08997 * 109.47093 * 60.00225 * 1 2 3 30 30 H 1.08999 * 109.47088 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46951 * 300.00014 * 1 2 3 32 32 H 1.09000 * 109.47162 * 175.00326 * 4 2 1 33 33 H 1.08996 * 109.47320 * 54.99753 * 4 2 1 34 34 H 0.96998 * 119.99746 * 179.97438 * 11 10 8 35 35 H 1.09000 * 109.46904 * 204.54379 * 16 7 5 36 36 H 1.09000 * 109.46646 * 324.54771 * 16 7 5 37 37 H 1.08999 * 109.47329 * 300.00314 * 17 16 7 38 38 H 1.09007 * 109.47135 * 60.00146 * 17 16 7 39 39 H 0.96699 * 117.00315 * 180.02562 * 20 18 17 40 40 H 1.08003 * 119.97455 * 359.97438 * 22 21 2 41 41 H 1.07999 * 119.98692 * 180.02562 * 23 22 21 42 42 H 1.07994 * 120.02250 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4765 6 8 1.0117 1.0875 2.3632 7 7 1.9801 -0.3946 3.7004 8 6 2.6877 -1.5618 3.8287 9 1 2.5247 -2.3714 3.1329 10 6 3.6148 -1.7031 4.8541 11 7 4.1379 -0.6377 5.4184 12 14 4.1173 -3.4074 5.4306 13 1 4.7186 -4.1558 4.2977 14 1 5.1112 -3.2858 6.5273 15 1 2.9212 -4.1352 5.9255 16 6 1.5930 0.3623 4.8936 17 6 0.1671 -0.0174 5.2980 18 6 -0.2308 0.7606 6.5257 19 8 0.5461 1.5393 7.0256 20 8 -1.4484 0.5887 7.0638 21 6 2.0323 -0.7104 -1.2305 22 6 1.6982 -2.0338 -1.4490 23 6 2.1586 -2.6867 -2.5766 24 6 2.9549 -2.0154 -3.4894 25 9 3.4052 -2.6540 -4.5914 26 6 3.2891 -0.6900 -3.2722 27 6 2.8230 -0.0355 -2.1449 28 9 3.1447 1.2596 -1.9340 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.1263 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2951 34 1 4.7848 -0.7364 6.1344 35 1 2.2767 0.1286 5.7097 36 1 1.6372 1.4296 4.6768 37 1 -0.5165 0.2163 4.4818 38 1 0.1229 -1.0848 5.5147 39 1 -1.6582 1.1101 7.8507 40 1 1.0776 -2.5582 -0.7374 41 1 1.8966 -3.7206 -2.7464 42 1 3.9104 -0.1659 -3.9833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592226081.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:53 Heat of formation + Delta-G solvation = -201.104816 kcal Electronic energy + Delta-G solvation = -29662.209928 eV Core-core repulsion = 25050.054744 eV Total energy + Delta-G solvation = -4612.155185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.08334 -48.93885 -39.87193 -39.44478 -38.48849 -35.89575 -35.36865 -34.30058 -31.99554 -30.89013 -30.81401 -29.26352 -27.27388 -25.25806 -24.16227 -23.49535 -22.82325 -20.84231 -19.98285 -19.08412 -18.29473 -17.79552 -17.36463 -16.66956 -16.34255 -16.00957 -15.92269 -15.79841 -15.57152 -15.30434 -15.13031 -14.69396 -14.53196 -14.35768 -14.13038 -13.93824 -13.27143 -12.98979 -12.77016 -12.67961 -12.59720 -12.46689 -12.10822 -11.81040 -11.76275 -11.41383 -11.32549 -11.18781 -11.12702 -10.83325 -10.74906 -10.62181 -10.49106 -10.32981 -10.15184 -10.06696 -9.18744 -9.12320 -8.62695 -8.44961 -7.68754 -6.47407 -4.16493 0.91311 0.94886 2.65227 3.05551 3.15891 3.16598 3.30768 3.39712 3.79765 3.82275 4.04491 4.38346 4.48933 4.54653 4.75624 4.86556 4.95408 5.09887 5.39262 5.53775 5.58694 5.65101 5.71660 5.78050 5.85272 5.90839 5.98627 6.01125 6.10007 6.14961 6.20126 6.29848 6.37118 6.54064 6.67586 6.72525 6.78508 6.81538 6.87916 7.26135 7.39801 7.78546 8.23964 8.29533 8.97094 9.39022 9.81946 10.53957 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012035 B = 0.003197 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.987902 B = 8755.643287 C =10084.810628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.040 4.040 3 H 0.090 0.910 4 C -0.109 4.109 5 C 0.471 3.529 6 O -0.600 6.600 7 N -0.437 5.437 8 C -0.350 4.350 9 H 0.093 0.907 10 C 0.045 3.955 11 N -0.850 5.850 12 Si 0.912 3.088 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.272 1.272 16 C 0.126 3.874 17 C -0.125 4.125 18 C 0.482 3.518 19 O -0.514 6.514 20 O -0.525 6.525 21 C -0.106 4.106 22 C -0.057 4.057 23 C -0.161 4.161 24 C 0.115 3.885 25 F -0.137 7.137 26 C -0.192 4.192 27 C 0.131 3.869 28 F -0.127 7.127 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.273 0.727 35 H 0.117 0.883 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.401 0.599 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.719 -4.444 -9.622 12.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.059 4.059 3 H 0.108 0.892 4 C -0.149 4.149 5 C 0.260 3.740 6 O -0.487 6.487 7 N -0.155 5.155 8 C -0.477 4.477 9 H 0.111 0.889 10 C -0.162 4.162 11 N -0.485 5.485 12 Si 0.738 3.262 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.197 1.197 16 C 0.002 3.998 17 C -0.164 4.164 18 C 0.325 3.675 19 O -0.401 6.401 20 O -0.337 6.337 21 C -0.107 4.107 22 C -0.075 4.075 23 C -0.180 4.180 24 C 0.096 3.904 25 F -0.115 7.115 26 C -0.211 4.211 27 C 0.111 3.889 28 F -0.106 7.106 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.135 0.865 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.259 0.741 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.507 -3.878 -9.749 11.850 hybrid contribution 0.523 -0.498 0.707 1.011 sum -4.984 -4.377 -9.042 11.214 Atomic orbital electron populations 1.21928 0.93559 1.01345 1.03189 1.19910 0.96821 0.99708 0.89426 0.89202 1.21409 1.02697 0.99113 0.91657 1.20360 0.83017 0.85580 0.84996 1.90505 1.45490 1.25904 1.86752 1.43432 1.47310 1.21891 1.02855 1.19387 1.19360 0.91958 1.16999 0.88908 1.25369 0.94630 0.98319 0.97925 1.69928 1.25287 1.29037 1.24266 0.86245 0.78540 0.82604 0.78830 1.19602 1.20854 1.19714 1.21193 0.91185 0.95846 0.91583 1.21864 1.01616 1.00664 0.92227 1.23793 0.78206 0.80479 0.85055 1.90707 1.51914 1.35651 1.61854 1.84588 1.36212 1.66442 1.46427 1.20257 0.98273 0.95037 0.97180 1.20821 0.97647 0.92940 0.96080 1.21184 1.00325 1.01418 0.95072 1.17261 0.97835 0.90368 0.84930 1.91506 1.87516 1.81583 1.50935 1.20968 1.05793 0.94604 0.99779 1.17187 0.97734 0.79250 0.94712 1.91531 1.90851 1.33578 1.94599 0.93596 0.93398 0.89404 0.89396 0.90060 0.91676 0.86493 0.91824 0.88344 0.87920 0.74136 0.83744 0.84187 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.75 37.16 0.33 -1.78 16 2 C -0.04 -0.63 2.19 -91.77 -0.20 -0.83 16 3 H 0.09 1.62 6.94 -51.93 -0.36 1.26 16 4 C -0.11 -1.94 3.57 -27.88 -0.10 -2.04 16 5 C 0.47 10.34 7.31 -10.98 -0.08 10.26 16 6 O -0.60 -14.18 13.64 5.55 0.08 -14.11 16 7 N -0.44 -10.14 2.56 -114.81 -0.29 -10.43 16 8 C -0.35 -8.12 8.71 -14.94 -0.13 -8.25 16 9 H 0.09 2.01 6.97 -52.49 -0.37 1.64 16 10 C 0.04 1.07 4.92 -17.47 -0.09 0.98 16 11 N -0.85 -21.82 11.33 55.50 0.63 -21.19 16 12 Si 0.91 18.38 29.61 -169.99 -5.03 13.35 16 13 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 14 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 15 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 16 C 0.13 2.91 4.18 -4.04 -0.02 2.89 16 17 C -0.12 -2.37 6.10 -27.89 -0.17 -2.54 16 18 C 0.48 8.68 8.33 36.00 0.30 8.98 16 19 O -0.51 -10.83 16.74 -18.75 -0.31 -11.15 16 20 O -0.53 -7.32 13.42 -39.24 -0.53 -7.84 16 21 C -0.11 -1.45 4.79 -104.54 -0.50 -1.95 16 22 C -0.06 -0.65 8.76 -39.60 -0.35 -0.99 16 23 C -0.16 -1.68 10.03 -39.50 -0.40 -2.08 16 24 C 0.12 1.32 7.30 -39.43 -0.29 1.04 16 25 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 26 C -0.19 -2.28 10.01 -39.45 -0.39 -2.67 16 27 C 0.13 1.79 7.24 -39.43 -0.29 1.50 16 28 F -0.13 -1.92 16.19 2.25 0.04 -1.88 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 31 H 0.09 1.52 5.95 -51.93 -0.31 1.21 16 32 H 0.09 1.65 8.10 -51.93 -0.42 1.23 16 33 H 0.08 1.29 7.06 -51.93 -0.37 0.93 16 34 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.12 2.96 5.31 -51.93 -0.28 2.69 16 36 H 0.06 1.59 7.55 -51.93 -0.39 1.20 16 37 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 38 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 39 H 0.40 3.66 9.10 45.56 0.41 4.08 16 40 H 0.14 1.41 7.16 -52.48 -0.38 1.03 16 41 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 364.64 15.07 5.49 5.49 Total: -1.00 -29.23 364.64 -6.35 -35.58 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -4.08 Total: 11.21 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -2.37 Total: 2.52 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.34 Total: -31.62 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.76 Total: -33.10 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.08 Total: -3.42 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.23 -6.35 -35.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592226081.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.530 kcal (2) G-P(sol) polarization free energy of solvation -29.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds