Wall clock time and date at job start Tue Mar 31 2020 23:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47370 * 2 1 4 4 C 1.53001 * 109.47290 * 239.99387 * 2 1 3 5 5 C 1.50706 * 109.46721 * 65.00351 * 4 2 1 6 6 O 1.21298 * 119.99782 * 6.16487 * 5 4 2 7 7 N 1.34772 * 119.99691 * 185.88535 * 5 4 2 8 8 C 1.37090 * 120.00562 * 355.20875 * 7 5 4 9 9 H 1.08010 * 119.99800 * 325.60032 * 8 7 5 10 10 C 1.38947 * 120.00595 * 145.59460 * 8 7 5 11 11 N 1.31414 * 119.99480 * 337.12370 * 10 8 7 12 12 Si 1.86796 * 120.00325 * 157.11951 * 10 8 7 13 13 H 1.48497 * 109.47078 * 60.00246 * 12 10 8 14 14 H 1.48501 * 109.47208 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47209 * 300.00051 * 12 10 8 16 16 C 1.46505 * 119.99529 * 175.20997 * 7 5 4 17 17 C 1.52999 * 109.47333 * 90.00132 * 16 7 5 18 18 C 1.50699 * 109.47317 * 179.97438 * 17 16 7 19 19 O 1.20822 * 119.99817 * 0.02562 * 18 17 16 20 20 O 1.34224 * 120.00048 * 180.02562 * 18 17 16 21 21 C 1.50702 * 109.46664 * 119.99836 * 2 1 3 22 22 C 1.38228 * 119.99069 * 59.72774 * 21 2 1 23 23 C 1.38184 * 120.05255 * 179.76402 * 22 21 2 24 24 C 1.38492 * 120.02667 * 0.51125 * 23 22 21 25 25 F 1.35099 * 120.01760 * 179.76761 * 24 23 22 26 26 C 1.38404 * 119.97230 * 359.73653 * 24 23 22 27 27 C 1.38437 * 119.94934 * 0.02562 * 26 24 23 28 28 F 1.35099 * 120.01443 * 180.02562 * 27 26 24 29 29 H 1.08998 * 109.47467 * 300.00265 * 1 2 3 30 30 H 1.08999 * 109.46640 * 60.00090 * 1 2 3 31 31 H 1.08997 * 109.47370 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47229 * 305.00934 * 4 2 1 33 33 H 1.08997 * 109.46949 * 184.99943 * 4 2 1 34 34 H 0.97004 * 119.99892 * 185.51183 * 11 10 8 35 35 H 1.08999 * 109.46996 * 209.99853 * 16 7 5 36 36 H 1.08997 * 109.47501 * 330.00130 * 16 7 5 37 37 H 1.08999 * 109.46852 * 299.99810 * 17 16 7 38 38 H 1.08997 * 109.46828 * 59.99586 * 17 16 7 39 39 H 0.96700 * 117.00322 * 180.02562 * 20 18 17 40 40 H 1.08006 * 119.97271 * 0.02562 * 22 21 2 41 41 H 1.08007 * 119.98469 * 180.25053 * 23 22 21 42 42 H 1.08000 * 120.02411 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 8 1.1104 1.1414 -2.3611 7 7 1.8799 -0.4495 -3.7025 8 6 2.5724 -1.6252 -3.8357 9 1 3.3662 -1.8657 -3.1440 10 6 2.2529 -2.5075 -4.8605 11 7 1.0594 -2.4724 -5.4094 12 14 3.5199 -3.7432 -5.4581 13 1 3.9168 -4.6282 -4.3336 14 1 2.9358 -4.5620 -6.5506 15 1 4.7144 -3.0215 -5.9654 16 6 1.3993 0.2564 -4.8929 17 6 2.4706 1.2388 -5.3706 18 6 1.9764 1.9645 -6.5954 19 8 0.8797 1.7213 -7.0403 20 8 2.7546 2.8811 -7.1921 21 6 2.0322 -0.7104 1.2305 22 6 1.6934 -2.0321 1.4519 23 6 2.1572 -2.6862 2.5774 24 6 2.9535 -2.0149 3.4903 25 9 3.4030 -2.6532 4.5929 26 6 3.2891 -0.6900 3.2723 27 6 2.8279 -0.0372 2.1419 28 9 3.1552 1.2559 1.9275 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7199 -1.2951 33 1 3.1263 -0.7995 -1.2054 34 1 0.8088 -3.1389 -6.0682 35 1 1.1894 -0.4646 -5.6829 36 1 0.4885 0.8029 -4.6483 37 1 2.6805 1.9598 -4.5806 38 1 3.3814 0.6924 -5.6152 39 1 2.3943 3.3206 -7.9745 40 1 1.0692 -2.5553 0.7426 41 1 1.8952 -3.7201 2.7472 42 1 3.9103 -0.1659 3.9834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592226083.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:56 Heat of formation + Delta-G solvation = -201.711918 kcal Electronic energy + Delta-G solvation = -29647.828431 eV Core-core repulsion = 25035.646920 eV Total energy + Delta-G solvation = -4612.181511 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.08064 -48.95943 -39.85566 -39.43093 -38.47518 -35.88327 -35.35320 -34.30287 -31.98852 -30.88012 -30.79658 -29.25071 -27.25770 -25.26974 -24.15185 -23.48092 -22.81743 -20.80052 -20.00690 -19.05842 -18.29401 -17.77946 -17.36117 -16.65113 -16.33666 -16.00814 -15.95156 -15.79036 -15.54696 -15.32007 -15.15729 -14.59997 -14.44518 -14.41642 -14.22363 -13.95312 -13.14695 -12.92657 -12.89670 -12.65785 -12.63055 -12.42168 -11.92316 -11.89343 -11.72758 -11.52848 -11.28409 -11.16601 -11.10741 -10.86184 -10.68124 -10.57334 -10.48739 -10.33591 -10.13742 -10.06034 -9.25454 -9.11801 -8.63060 -8.45509 -7.66058 -6.48448 -4.16833 0.91432 0.95360 2.66524 3.03897 3.15143 3.15564 3.31320 3.41716 3.79426 3.81371 4.03370 4.38212 4.49256 4.56486 4.77085 4.84320 4.95910 5.11054 5.42165 5.54816 5.59296 5.68196 5.72260 5.80343 5.86601 5.95487 5.98454 6.03087 6.12930 6.19425 6.28457 6.33377 6.38423 6.47126 6.70700 6.74958 6.78840 6.83210 6.88972 7.24834 7.42488 7.78340 8.24950 8.30685 8.96681 9.39177 9.82372 10.52423 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012059 B = 0.003209 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.448987 B = 8724.670486 C =10155.384590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 H 0.090 0.910 4 C -0.109 4.109 5 C 0.471 3.529 6 O -0.601 6.601 7 N -0.437 5.437 8 C -0.350 4.350 9 H 0.092 0.908 10 C 0.047 3.953 11 N -0.851 5.851 12 Si 0.912 3.088 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.272 1.272 16 C 0.123 3.877 17 C -0.124 4.124 18 C 0.483 3.517 19 O -0.515 6.515 20 O -0.525 6.525 21 C -0.106 4.106 22 C -0.056 4.056 23 C -0.160 4.160 24 C 0.115 3.885 25 F -0.137 7.137 26 C -0.193 4.193 27 C 0.129 3.871 28 F -0.128 7.128 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.274 0.726 35 H 0.119 0.881 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.401 0.599 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.658 0.799 9.530 10.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.058 4.058 3 H 0.108 0.892 4 C -0.149 4.149 5 C 0.261 3.739 6 O -0.488 6.488 7 N -0.155 5.155 8 C -0.478 4.478 9 H 0.110 0.890 10 C -0.160 4.160 11 N -0.487 5.487 12 Si 0.738 3.262 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.197 1.197 16 C -0.001 4.001 17 C -0.163 4.163 18 C 0.325 3.675 19 O -0.402 6.402 20 O -0.336 6.336 21 C -0.108 4.108 22 C -0.074 4.074 23 C -0.179 4.179 24 C 0.096 3.904 25 F -0.116 7.116 26 C -0.212 4.212 27 C 0.110 3.890 28 F -0.107 7.107 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.136 0.864 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.258 0.742 40 H 0.165 0.835 41 H 0.159 0.841 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.183 1.006 9.621 10.184 hybrid contribution 0.705 -0.403 -0.699 1.072 sum 3.888 0.603 8.922 9.751 Atomic orbital electron populations 1.21875 0.93481 1.01600 1.02899 1.19907 0.96926 0.99575 0.89426 0.89218 1.21414 1.01706 1.00147 0.91619 1.20365 0.81397 0.87079 0.85096 1.90522 1.48255 1.23111 1.86908 1.43422 1.48923 1.20304 1.02839 1.19386 1.15395 0.96585 1.16400 0.88994 1.25382 0.95673 0.97638 0.97330 1.69823 1.17206 1.34140 1.27502 0.86231 0.80931 0.80114 0.78886 1.19608 1.20842 1.19681 1.21244 0.93335 0.94242 0.91281 1.21853 1.03274 0.99123 0.92052 1.23814 0.82619 0.76394 0.84667 1.90698 1.21903 1.63261 1.64375 1.84593 1.50841 1.52819 1.45388 1.20261 0.98168 0.95081 0.97250 1.20878 0.97468 0.92950 0.96068 1.21204 1.00198 1.01465 0.95063 1.17268 0.97882 0.90372 0.84902 1.91507 1.87544 1.81608 1.50893 1.20953 1.05943 0.94629 0.99692 1.17179 0.97857 0.79266 0.94738 1.91522 1.90757 1.33821 1.94564 0.93550 0.89818 0.93116 0.89127 0.90329 0.91558 0.86367 0.91735 0.88433 0.87852 0.74162 0.83544 0.84143 0.83782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.75 37.16 0.33 -1.89 16 2 C -0.04 -0.63 2.19 -91.77 -0.20 -0.83 16 3 H 0.09 1.58 6.85 -51.93 -0.36 1.23 16 4 C -0.11 -1.96 3.59 -27.88 -0.10 -2.06 16 5 C 0.47 10.39 7.23 -10.98 -0.08 10.31 16 6 O -0.60 -14.33 13.85 5.54 0.08 -14.26 16 7 N -0.44 -10.13 2.54 -114.81 -0.29 -10.43 16 8 C -0.35 -8.10 8.58 -14.94 -0.13 -8.23 16 9 H 0.09 2.02 7.17 -52.48 -0.38 1.64 16 10 C 0.05 1.11 4.95 -17.47 -0.09 1.02 16 11 N -0.85 -21.39 11.33 55.50 0.63 -20.76 16 12 Si 0.91 18.26 29.61 -169.99 -5.03 13.22 16 13 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 14 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 15 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 16 C 0.12 2.84 4.26 -4.04 -0.02 2.82 16 17 C -0.12 -2.41 6.13 -27.88 -0.17 -2.58 16 18 C 0.48 8.81 8.33 36.01 0.30 9.11 16 19 O -0.51 -10.90 16.74 -18.75 -0.31 -11.21 16 20 O -0.52 -7.49 13.42 -39.24 -0.53 -8.01 16 21 C -0.11 -1.45 4.79 -104.54 -0.50 -1.95 16 22 C -0.06 -0.66 8.76 -39.60 -0.35 -1.00 16 23 C -0.16 -1.72 10.02 -39.51 -0.40 -2.11 16 24 C 0.12 1.32 7.30 -39.43 -0.29 1.03 16 25 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 26 C -0.19 -2.24 10.01 -39.45 -0.39 -2.64 16 27 C 0.13 1.73 7.24 -39.43 -0.29 1.44 16 28 F -0.13 -1.86 16.19 2.25 0.04 -1.82 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.56 6.18 -51.93 -0.32 1.24 16 31 H 0.05 0.72 7.37 -51.93 -0.38 0.34 16 32 H 0.09 1.60 7.45 -51.93 -0.39 1.21 16 33 H 0.08 1.36 7.81 -51.93 -0.41 0.95 16 34 H 0.27 6.57 8.32 -40.82 -0.34 6.23 16 35 H 0.12 2.99 5.30 -51.93 -0.28 2.71 16 36 H 0.06 1.59 7.46 -51.93 -0.39 1.20 16 37 H 0.10 1.86 8.14 -51.93 -0.42 1.43 16 38 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 39 H 0.40 3.76 9.10 45.56 0.41 4.18 16 40 H 0.15 1.58 7.16 -52.48 -0.38 1.20 16 41 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 42 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -28.73 365.12 -6.35 -35.08 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -4.10 Total: 11.78 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.37 Total: 2.44 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: 0.34 Total: -31.18 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.76 Total: -33.48 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.08 Total: -3.36 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.73 -6.35 -35.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592226083.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.629 kcal (2) G-P(sol) polarization free energy of solvation -28.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds