Wall clock time and date at job start Tue Mar 31 2020 22:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.46849 * 2 1 4 4 N 1.46907 * 109.46842 * 119.99068 * 2 1 3 5 5 C 1.46898 * 111.00098 * 205.29627 * 4 2 1 6 6 H 1.09001 * 109.47163 * 325.65854 * 5 4 2 7 7 C 1.53006 * 109.46997 * 85.65982 * 5 4 2 8 8 C 1.50699 * 109.47052 * 205.65675 * 5 4 2 9 9 O 1.21281 * 120.00432 * 0.02562 * 8 5 4 10 10 N 1.34774 * 120.00038 * 179.97438 * 8 5 4 11 11 C 1.46500 * 120.00075 * 0.02562 * 10 8 5 12 12 C 1.46499 * 120.00211 * 180.02562 * 10 8 5 13 13 C 1.50704 * 109.46994 * 90.00639 * 12 10 8 14 14 H 1.08008 * 119.99986 * 359.97438 * 13 12 10 15 15 C 1.37873 * 120.00279 * 180.02562 * 13 12 10 16 16 N 1.31514 * 119.99853 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00342 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46849 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47414 * 119.99605 * 17 15 13 20 20 H 1.48503 * 109.47455 * 240.00114 * 17 15 13 21 21 C 1.50693 * 109.47590 * 239.99571 * 2 1 3 22 22 N 1.29392 * 124.70642 * 285.02380 * 21 2 1 23 23 C 1.30908 * 117.46961 * 179.97438 * 22 21 2 24 24 C 1.36763 * 113.93325 * 0.02562 * 23 22 21 25 25 C 1.46502 * 126.18173 * 179.97438 * 24 23 22 26 26 O 1.21609 * 120.00224 * 180.02562 * 25 24 23 27 27 O 1.34885 * 119.99633 * 0.02562 * 25 24 23 28 28 S 1.70928 * 124.70678 * 104.72377 * 21 2 1 29 29 H 1.09007 * 109.46977 * 64.24310 * 1 2 3 30 30 H 1.09002 * 109.47455 * 184.23527 * 1 2 3 31 31 H 1.08997 * 109.47837 * 304.24252 * 1 2 3 32 32 H 1.00896 * 111.00151 * 329.25769 * 4 2 1 33 33 H 1.09000 * 109.46951 * 307.85757 * 7 5 4 34 34 H 1.09006 * 109.46696 * 67.85098 * 7 5 4 35 35 H 1.08996 * 109.46722 * 187.85048 * 7 5 4 36 36 H 1.08999 * 109.47232 * 89.99399 * 11 10 8 37 37 H 1.08994 * 109.47430 * 209.99784 * 11 10 8 38 38 H 1.09000 * 109.47159 * 329.99891 * 11 10 8 39 39 H 1.08998 * 109.47141 * 209.99992 * 12 10 8 40 40 H 1.09001 * 109.47346 * 330.00626 * 12 10 8 41 41 H 0.97003 * 119.99911 * 180.02562 * 16 15 13 42 42 H 1.08006 * 123.03723 * 179.97438 * 23 22 21 43 43 H 0.96701 * 116.99473 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6923 1.1996 5 6 3.3640 -0.2264 1.5645 6 1 3.9253 0.0079 0.6600 7 6 3.2507 1.0278 2.4336 8 6 4.0788 -1.3074 2.3335 9 8 3.5233 -2.3624 2.5553 10 7 5.3360 -1.1023 2.7739 11 6 6.0074 0.1718 2.5055 12 6 6.0311 -2.1534 3.5210 13 6 6.7816 -3.0398 2.5606 14 1 6.7441 -2.8403 1.4997 15 6 7.5152 -4.1060 3.0360 16 7 7.5604 -4.3492 4.3277 17 14 8.4448 -5.2051 1.8456 18 1 8.2327 -4.7221 0.4574 19 1 9.8941 -5.1685 2.1668 20 1 7.9460 -6.5987 1.9659 21 6 2.0324 -0.7104 -1.2303 22 7 2.0180 -1.9934 -1.3977 23 6 2.4908 -2.4606 -2.5255 24 6 2.9421 -1.4936 -3.3809 25 6 3.5220 -1.7149 -4.7079 26 8 3.8887 -0.7678 -5.3769 27 8 3.6492 -2.9691 -5.1876 28 16 2.6935 0.0672 -2.6014 29 1 -0.3633 0.4466 -0.9256 30 1 -0.3634 -1.0249 0.0759 31 1 -0.3635 0.5782 0.8495 32 1 1.3768 -0.5806 1.9693 33 1 2.6152 1.7594 1.9346 34 1 2.8138 0.7640 3.3968 35 1 4.2421 1.4532 2.5886 36 1 5.8036 0.8683 3.3188 37 1 7.0821 0.0071 2.4290 38 1 5.6360 0.5881 1.5691 39 1 6.7331 -1.6988 4.2199 40 1 5.3036 -2.7491 4.0724 41 1 8.0769 -5.0991 4.6622 42 1 2.5226 -3.5146 -2.7590 43 1 4.0372 -3.0650 -6.0682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593203711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:57 Heat of formation + Delta-G solvation = -62.615026 kcal Electronic energy + Delta-G solvation = -27647.883356 eV Core-core repulsion = 23627.866677 eV Total energy + Delta-G solvation = -4020.016679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.51509 -39.83314 -39.16994 -36.82298 -36.32505 -34.74437 -33.17311 -32.29582 -30.49631 -28.56662 -27.34836 -26.53740 -26.01709 -24.02685 -23.45071 -22.55992 -21.89693 -19.98299 -18.63763 -18.40923 -17.76190 -17.03613 -16.53265 -16.33426 -16.00702 -15.77459 -15.52069 -14.86614 -14.67916 -14.46854 -14.32908 -14.01532 -13.78789 -13.66704 -13.35650 -12.95608 -12.46679 -12.36435 -12.22999 -12.06386 -11.93132 -11.89729 -11.86683 -11.78750 -11.34776 -11.32852 -11.19323 -11.12200 -10.81438 -10.55450 -10.11742 -9.76819 -9.66104 -9.56425 -9.16815 -8.91692 -8.40333 -8.33068 -7.56856 -6.00938 -4.05034 -0.11426 0.78833 1.36634 2.06985 2.81368 2.90132 3.32018 3.39541 3.43163 3.52725 3.65225 3.85514 4.25857 4.48033 4.58268 4.70654 4.76367 4.90956 4.94377 5.09650 5.13759 5.14300 5.32274 5.34060 5.44727 5.54709 5.63939 5.71675 5.82995 5.89009 5.90731 5.97897 6.11941 6.23539 6.72582 7.12037 7.28934 7.48533 7.49920 7.59831 7.60586 7.96327 8.27796 8.48941 8.95770 9.21246 9.60267 11.07130 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008964 B = 0.003947 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.997191 B = 7091.824434 C = 9221.542875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.158 3.842 3 H 0.069 0.931 4 N -0.642 5.642 5 C 0.066 3.934 6 H 0.091 0.909 7 C -0.189 4.189 8 C 0.510 3.490 9 O -0.514 6.514 10 N -0.606 5.606 11 C 0.083 3.917 12 C 0.248 3.752 13 C -0.523 4.523 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.282 1.282 21 C 0.076 3.924 22 N -0.442 5.442 23 C 0.141 3.859 24 C -0.314 4.314 25 C 0.571 3.429 26 O -0.517 6.517 27 O -0.504 6.504 28 S 0.213 5.787 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.358 0.642 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.031 0.969 40 H 0.043 0.957 41 H 0.262 0.738 42 H 0.191 0.809 43 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.727 13.846 -13.265 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.044 3.956 3 H 0.087 0.913 4 N -0.276 5.276 5 C -0.048 4.048 6 H 0.109 0.891 7 C -0.248 4.248 8 C 0.295 3.705 9 O -0.388 6.388 10 N -0.340 5.340 11 C -0.061 4.061 12 C 0.129 3.871 13 C -0.562 4.562 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.724 3.276 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.208 1.208 21 C -0.199 4.199 22 N -0.154 5.154 23 C -0.021 4.021 24 C -0.436 4.436 25 C 0.414 3.586 26 O -0.407 6.407 27 O -0.316 6.316 28 S 0.472 5.528 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.180 0.820 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.208 0.792 43 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -12.822 13.673 -12.943 22.779 hybrid contribution 0.993 -0.865 -1.152 1.750 sum -11.830 12.808 -14.095 22.420 Atomic orbital electron populations 1.21958 0.91711 1.04391 1.02700 1.20105 0.95854 0.93366 0.86273 0.91289 1.59754 1.02617 1.59080 1.06136 1.21583 0.91144 0.93292 0.98765 0.89150 1.22687 1.04115 0.97259 1.00750 1.20002 0.81942 0.88088 0.80484 1.90683 1.66009 1.26369 1.55780 1.48121 1.13713 1.16354 1.55797 1.21747 0.99221 0.86192 0.98969 1.19249 0.91889 0.84763 0.91245 1.21470 1.28970 1.12041 0.93676 0.92597 1.24918 0.96699 0.97245 0.95202 1.69941 1.41551 1.29794 1.12190 0.86471 0.79230 0.80693 0.81210 1.19882 1.20994 1.20822 1.27907 0.99047 0.92964 1.00031 1.66090 1.17705 1.11775 1.19821 1.22915 0.91441 1.01442 0.86268 1.24843 1.19855 0.98144 1.00769 1.19004 0.74582 0.80675 0.84342 1.90955 1.47473 1.43017 1.59258 1.84580 1.77181 1.30020 1.39777 1.83918 1.53721 1.06229 1.08917 0.91501 0.90153 0.91040 0.82009 0.92258 0.91551 0.90058 0.93601 0.90932 0.92763 0.95129 0.93883 0.92828 0.79199 0.72238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.15 37.15 0.34 -0.81 16 2 C 0.16 1.61 2.90 -68.87 -0.20 1.41 16 3 H 0.07 0.54 7.15 -51.93 -0.37 0.17 16 4 N -0.64 -8.64 5.50 -102.17 -0.56 -9.21 16 5 C 0.07 0.95 2.00 -68.86 -0.14 0.81 16 6 H 0.09 1.27 6.90 -51.93 -0.36 0.91 16 7 C -0.19 -1.98 8.72 37.16 0.32 -1.66 16 8 C 0.51 10.64 7.14 -10.99 -0.08 10.56 16 9 O -0.51 -13.27 16.01 5.56 0.09 -13.18 16 10 N -0.61 -12.86 2.86 -182.96 -0.52 -13.38 16 11 C 0.08 1.29 8.79 59.85 0.53 1.82 16 12 C 0.25 6.56 5.16 -5.19 -0.03 6.54 16 13 C -0.52 -15.15 9.39 -34.44 -0.32 -15.48 16 14 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 17 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 18 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 21 C 0.08 0.94 5.91 -13.31 -0.08 0.86 16 22 N -0.44 -6.51 10.45 -11.26 -0.12 -6.62 16 23 C 0.14 1.84 11.20 -18.48 -0.21 1.64 16 24 C -0.31 -3.94 6.51 -36.79 -0.24 -4.17 16 25 C 0.57 6.91 8.30 34.06 0.28 7.20 16 26 O -0.52 -7.38 17.75 -19.35 -0.34 -7.72 16 27 O -0.50 -4.55 13.23 -41.00 -0.54 -5.09 16 28 S 0.21 2.34 23.00 -107.50 -2.47 -0.14 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.36 4.31 8.09 -39.29 -0.32 3.99 16 33 H 0.06 0.46 7.41 -51.93 -0.38 0.07 16 34 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16 35 H 0.08 0.81 4.79 -51.93 -0.25 0.56 16 36 H 0.05 0.60 7.13 -51.93 -0.37 0.23 16 37 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 38 H 0.05 0.70 5.92 -51.93 -0.31 0.39 16 39 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 40 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.19 2.14 8.06 -52.48 -0.42 1.72 16 43 H 0.42 1.74 9.11 45.56 0.42 2.16 16 LS Contribution 380.37 15.07 5.73 5.73 Total: -1.00 -38.61 380.37 -7.76 -46.38 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -4.82 Total: 1.72 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 0.08 Total: 10.38 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.47 Total: -55.46 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.80 Total: -25.99 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.47 Total: -0.14 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.61 -7.76 -46.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593203711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.239 kcal (2) G-P(sol) polarization free energy of solvation -38.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds