Wall clock time and date at job start Tue Mar 31 2020 22:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47197 * 2 1 4 4 N 1.46899 * 109.46908 * 120.00035 * 2 1 3 5 5 C 1.46904 * 110.99744 * 276.55783 * 4 2 1 6 6 H 1.09001 * 109.47385 * 35.79132 * 5 4 2 7 7 C 1.52999 * 109.47116 * 155.79046 * 5 4 2 8 8 C 1.50707 * 109.47180 * 275.78734 * 5 4 2 9 9 N 1.29391 * 124.70437 * 314.99857 * 8 5 4 10 10 C 1.30905 * 117.46559 * 179.97438 * 9 8 5 11 11 C 1.36761 * 113.93626 * 0.02562 * 10 9 8 12 12 C 1.46501 * 126.18474 * 179.97438 * 11 10 9 13 13 O 1.21608 * 120.00140 * 180.02562 * 12 11 10 14 14 O 1.34880 * 119.99396 * 0.02562 * 12 11 10 15 15 S 1.70917 * 124.70536 * 135.00228 * 8 5 4 16 16 C 1.50701 * 109.47165 * 240.00076 * 2 1 3 17 17 O 1.21281 * 119.99591 * 246.99321 * 16 2 1 18 18 N 1.34776 * 119.99898 * 66.99480 * 16 2 1 19 19 C 1.46495 * 120.00212 * 6.26581 * 18 16 2 20 20 C 1.46501 * 119.99709 * 186.26643 * 18 16 2 21 21 C 1.50704 * 109.47022 * 89.99963 * 20 18 16 22 22 H 1.07997 * 119.99847 * 359.97438 * 21 20 18 23 23 C 1.37873 * 119.99874 * 180.02562 * 21 20 18 24 24 N 1.31513 * 120.00095 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00111 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47039 * 90.00657 * 25 23 21 27 27 H 1.48505 * 109.47250 * 209.99855 * 25 23 21 28 28 H 1.48499 * 109.47204 * 330.00302 * 25 23 21 29 29 H 1.08996 * 109.47011 * 305.92539 * 1 2 3 30 30 H 1.09005 * 109.46982 * 65.91908 * 1 2 3 31 31 H 1.08997 * 109.47477 * 185.92047 * 1 2 3 32 32 H 1.00899 * 111.00162 * 152.60730 * 4 2 1 33 33 H 1.09004 * 109.47122 * 295.17939 * 7 5 4 34 34 H 1.09002 * 109.47355 * 55.17100 * 7 5 4 35 35 H 1.08993 * 109.47855 * 175.18147 * 7 5 4 36 36 H 1.07997 * 123.03976 * 180.02562 * 10 9 8 37 37 H 0.96704 * 116.99261 * 180.02562 * 14 12 11 38 38 H 1.09005 * 109.47195 * 84.51640 * 19 18 16 39 39 H 1.08999 * 109.47060 * 204.51399 * 19 18 16 40 40 H 1.09003 * 109.47438 * 324.51671 * 19 18 16 41 41 H 1.08995 * 109.47228 * 210.00037 * 20 18 16 42 42 H 1.09000 * 109.47278 * 330.00237 * 20 18 16 43 43 H 0.97002 * 120.00646 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0474 0.2132 2.3557 6 1 1.1998 0.8965 2.3025 7 6 1.9631 -0.6044 3.6462 8 6 3.3309 1.0030 2.3445 9 7 4.5024 0.5017 2.1201 10 6 5.5239 1.3200 2.1438 11 6 5.1885 2.6187 2.4105 12 6 6.1146 3.7503 2.5008 13 8 5.6920 4.8639 2.7458 14 8 7.4361 3.5567 2.3123 15 16 3.4408 2.6852 2.6265 16 6 2.0324 -0.7104 -1.2305 17 8 2.6215 -1.7651 -1.1236 18 7 1.8269 -0.1736 -2.4496 19 6 1.2391 1.1626 -2.5720 20 6 2.1915 -0.9265 -3.6523 21 6 1.0175 -1.7593 -4.0987 22 1 0.0925 -1.7309 -3.5420 23 6 1.1247 -2.5582 -5.2173 24 7 0.1000 -3.2845 -5.6072 25 14 2.7249 -2.6078 -6.1798 26 1 3.5967 -3.6799 -5.6358 27 1 2.4342 -2.8843 -7.6096 28 1 3.4159 -1.2989 -6.0592 29 1 -0.3633 0.6029 0.8322 30 1 -0.3633 0.4193 -0.9383 31 1 -0.3634 -1.0221 0.1060 32 1 2.9287 -1.0989 1.0366 33 1 0.9979 -1.1087 3.6944 34 1 2.7616 -1.3464 3.6590 35 1 2.0697 0.0589 4.5044 36 1 6.5400 0.9987 1.9686 37 1 8.0078 4.3335 2.3822 38 1 2.0231 1.9143 -2.4800 39 1 0.7555 1.2591 -3.5441 40 1 0.5013 1.3087 -1.7830 41 1 2.4672 -0.2322 -4.4459 42 1 3.0362 -1.5788 -3.4305 43 1 0.1753 -3.8464 -6.3944 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593203712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:00 Heat of formation + Delta-G solvation = -62.429211 kcal Electronic energy + Delta-G solvation = -27501.489496 eV Core-core repulsion = 23481.480875 eV Total energy + Delta-G solvation = -4020.008621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.76464 -40.09936 -39.39563 -36.76698 -36.51451 -35.01680 -33.11368 -32.31692 -30.63317 -28.95106 -28.00233 -26.59597 -26.16620 -23.98172 -23.59089 -22.56498 -21.59401 -20.00393 -18.99918 -18.49200 -18.04652 -17.17126 -16.97141 -16.52676 -16.29700 -16.21087 -15.24848 -14.97714 -14.91580 -14.60625 -14.51820 -14.11017 -13.95703 -13.80674 -13.38553 -12.77127 -12.52121 -12.45358 -12.29081 -12.16123 -12.06269 -12.04963 -12.00291 -11.65793 -11.59347 -11.40261 -11.37650 -11.21631 -10.82176 -10.53686 -10.16038 -10.14480 -9.98042 -9.55737 -9.39755 -9.01979 -8.68775 -8.60173 -7.74287 -6.10203 -4.09313 -0.35189 0.58954 1.16396 1.81572 2.54629 2.69110 3.22521 3.28356 3.34283 3.36556 3.47918 3.69097 4.18376 4.37970 4.38545 4.53472 4.79027 4.83881 4.92050 4.96754 5.13202 5.23545 5.28816 5.40900 5.50751 5.58876 5.65602 5.76686 5.79562 5.84485 5.93416 6.01726 6.09832 6.43358 6.60012 6.78813 6.93331 7.16351 7.27249 7.32887 7.37088 7.58661 8.18068 8.44711 8.86492 8.94133 9.49953 11.03031 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014089 B = 0.002934 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.907621 B = 9540.420549 C =10507.383276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 H 0.058 0.942 4 N -0.644 5.644 5 C 0.157 3.843 6 H 0.102 0.898 7 C -0.132 4.132 8 C 0.031 3.969 9 N -0.473 5.473 10 C 0.140 3.860 11 C -0.315 4.315 12 C 0.570 3.430 13 O -0.513 6.513 14 O -0.504 6.504 15 S 0.238 5.762 16 C 0.509 3.491 17 O -0.529 6.529 18 N -0.595 5.595 19 C 0.070 3.930 20 C 0.215 3.785 21 C -0.530 4.530 22 H 0.075 0.925 23 C 0.073 3.927 24 N -0.896 5.896 25 Si 0.876 3.124 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.267 1.267 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.371 0.629 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.192 0.808 37 H 0.420 0.580 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.029 0.971 42 H 0.037 0.963 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.579 15.651 19.476 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.050 4.050 3 H 0.075 0.925 4 N -0.279 5.279 5 C 0.042 3.958 6 H 0.120 0.880 7 C -0.192 4.192 8 C -0.245 4.245 9 N -0.187 5.187 10 C -0.021 4.021 11 C -0.437 4.437 12 C 0.412 3.588 13 O -0.403 6.403 14 O -0.317 6.317 15 S 0.497 5.503 16 C 0.294 3.706 17 O -0.406 6.406 18 N -0.327 5.327 19 C -0.074 4.074 20 C 0.095 3.905 21 C -0.568 4.568 22 H 0.094 0.906 23 C -0.129 4.129 24 N -0.535 5.535 25 Si 0.703 3.297 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.191 1.191 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.196 0.804 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.209 0.791 37 H 0.279 0.721 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.095 14.866 19.651 25.383 hybrid contribution 2.906 0.803 -1.083 3.203 sum 9.001 15.669 18.569 25.910 Atomic orbital electron populations 1.21938 0.91979 1.04052 1.02174 1.21551 0.97831 0.96012 0.89624 0.92463 1.60691 1.35247 1.29816 1.02194 1.20720 0.88090 0.92447 0.94510 0.87958 1.21758 1.04254 0.99974 0.93189 1.29316 0.99880 0.96241 0.99056 1.66032 0.97826 1.37646 1.17188 1.22770 0.99722 0.86426 0.93159 1.24909 0.97684 0.97784 1.23358 1.18992 0.80924 0.86278 0.72569 1.90972 1.78499 1.25218 1.45637 1.84567 1.18252 1.44900 1.83950 1.84090 0.98344 1.06987 1.60900 1.20162 0.80180 0.85837 0.84380 1.90671 1.41513 1.22550 1.85835 1.47750 1.61252 1.17033 1.06660 1.21959 0.97756 0.83742 1.03905 1.19692 0.97448 0.91886 0.81493 1.21320 0.99042 1.24964 1.11507 0.90645 1.24847 0.96346 0.94752 0.96995 1.69891 1.30355 1.27709 1.25520 0.86857 0.84284 0.79195 0.79386 1.19849 1.21040 1.19149 0.92224 0.90580 0.90595 0.80377 0.90139 0.91227 0.92205 0.79096 0.72097 0.93938 0.90216 0.91151 0.95268 0.94455 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.96 37.16 0.33 -1.52 16 2 C 0.06 0.92 2.03 -68.86 -0.14 0.78 16 3 H 0.06 0.73 7.24 -51.93 -0.38 0.35 16 4 N -0.64 -8.87 5.87 -102.16 -0.60 -9.47 16 5 C 0.16 1.56 2.91 -68.86 -0.20 1.36 16 6 H 0.10 0.81 7.06 -51.93 -0.37 0.44 16 7 C -0.13 -1.12 9.50 37.16 0.35 -0.77 16 8 C 0.03 0.32 5.82 -13.30 -0.08 0.24 16 9 N -0.47 -5.61 9.86 -11.26 -0.11 -5.72 16 10 C 0.14 1.44 11.20 -18.48 -0.21 1.23 16 11 C -0.31 -3.20 6.51 -36.79 -0.24 -3.44 16 12 C 0.57 5.64 8.30 34.06 0.28 5.92 16 13 O -0.51 -6.35 17.75 -19.35 -0.34 -6.70 16 14 O -0.50 -3.40 13.23 -40.99 -0.54 -3.95 16 15 S 0.24 2.18 23.00 -107.50 -2.47 -0.29 16 16 C 0.51 10.27 6.95 -10.98 -0.08 10.20 16 17 O -0.53 -12.91 15.33 5.56 0.09 -12.82 16 18 N -0.59 -12.14 2.86 -182.95 -0.52 -12.66 16 19 C 0.07 1.06 9.81 59.84 0.59 1.64 16 20 C 0.22 5.27 4.25 -5.19 -0.02 5.25 16 21 C -0.53 -15.12 9.94 -34.44 -0.34 -15.47 16 22 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 23 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 24 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 25 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 26 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 28 H -0.27 -6.21 6.54 56.52 0.37 -5.85 16 29 H 0.06 0.57 7.40 -51.93 -0.38 0.18 16 30 H 0.08 0.99 5.35 -51.93 -0.28 0.71 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.37 6.00 6.88 -39.29 -0.27 5.73 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.19 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.42 0.87 9.11 45.56 0.42 1.28 16 38 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 1.23 8.03 -51.93 -0.42 0.82 16 40 H 0.07 0.88 4.29 -51.93 -0.22 0.66 16 41 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 42 H 0.04 0.98 6.77 -51.93 -0.35 0.63 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 376.13 15.07 5.67 5.67 Total: -1.00 -36.96 376.13 -7.33 -44.29 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.75 Total: 4.01 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 0.15 Total: 7.47 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.46 Total: -54.62 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.80 Total: -23.47 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -2.47 Total: -0.29 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.96 -7.33 -44.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593203712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.140 kcal (2) G-P(sol) polarization free energy of solvation -36.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds