Wall clock time and date at job start Tue Mar 31 2020 22:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 N 1.46904 * 109.46688 * 240.00352 * 2 1 3 5 5 C 1.46900 * 110.99880 * 85.00502 * 4 2 1 6 6 H 1.09005 * 109.46923 * 324.99138 * 5 4 2 7 7 C 1.53000 * 109.47270 * 84.99727 * 5 4 2 8 8 C 1.50706 * 109.46901 * 204.99485 * 5 4 2 9 9 N 1.29387 * 124.70605 * 314.69981 * 8 5 4 10 10 C 1.30915 * 117.46389 * 179.76234 * 9 8 5 11 11 C 1.36754 * 113.93518 * 0.51493 * 10 9 8 12 12 C 1.46497 * 126.17975 * 179.70703 * 11 10 9 13 13 O 1.21616 * 120.00042 * 180.02562 * 12 11 10 14 14 O 1.34870 * 120.00287 * 0.02605 * 12 11 10 15 15 S 1.70927 * 124.70379 * 134.99564 * 8 5 4 16 16 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 17 17 O 1.21283 * 119.99803 * 119.99700 * 16 2 1 18 18 N 1.34777 * 119.99675 * 300.27576 * 16 2 1 19 19 C 1.46496 * 120.00345 * 359.72090 * 18 16 2 20 20 C 1.46497 * 119.99525 * 179.72583 * 18 16 2 21 21 C 1.50709 * 109.47273 * 89.99834 * 20 18 16 22 22 H 1.07999 * 119.99476 * 359.97438 * 21 20 18 23 23 C 1.37873 * 120.00210 * 179.97438 * 21 20 18 24 24 N 1.31517 * 119.99914 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00074 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46996 * 90.00193 * 25 23 21 27 27 H 1.48502 * 109.46931 * 210.00078 * 25 23 21 28 28 H 1.48498 * 109.47167 * 330.00145 * 25 23 21 29 29 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 30 30 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 31 31 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 32 32 H 1.00893 * 111.00020 * 321.04498 * 4 2 1 33 33 H 1.09005 * 109.46867 * 179.97438 * 7 5 4 34 34 H 1.08997 * 109.46847 * 299.99377 * 7 5 4 35 35 H 1.08993 * 109.47242 * 59.99825 * 7 5 4 36 36 H 1.08005 * 123.03131 * 180.26409 * 10 9 8 37 37 H 0.96704 * 117.00649 * 179.97438 * 14 12 11 38 38 H 1.08997 * 109.47115 * 90.00316 * 19 18 16 39 39 H 1.08995 * 109.47364 * 210.00706 * 19 18 16 40 40 H 1.09002 * 109.47090 * 330.00257 * 19 18 16 41 41 H 1.09000 * 109.46889 * 209.99487 * 20 18 16 42 42 H 1.09001 * 109.47460 * 330.00097 * 20 18 16 43 43 H 0.97000 * 120.00447 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 1 1.2575 0.9331 -2.2906 7 6 3.4111 0.9810 -2.3223 8 6 1.9786 -0.5674 -3.6260 9 7 2.6280 -1.6590 -3.8724 10 6 2.4263 -2.2331 -5.0315 11 6 1.5420 -1.5668 -5.8342 12 6 1.1273 -1.9653 -7.1815 13 8 0.3299 -1.2852 -7.7984 14 8 1.6300 -3.0863 -7.7379 15 16 0.9919 -0.1420 -4.9553 16 6 2.0323 -0.7105 1.2304 17 8 2.7295 -1.6966 1.1190 18 7 1.7021 -0.2534 2.4545 19 6 0.8599 0.9377 2.5891 20 6 2.1855 -0.9476 3.6505 21 6 3.5117 -0.3659 4.0676 22 1 3.9508 0.4401 3.4983 23 6 4.1645 -0.8625 5.1758 24 7 3.6301 -1.8443 5.8687 25 14 5.8087 -0.1420 5.6922 26 1 5.5821 0.9811 6.6370 27 1 6.6223 -1.1915 6.3569 28 1 6.5288 0.3573 4.4933 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.4495 -1.4978 -1.4101 33 1 3.4579 1.6597 -3.1740 34 1 3.4862 1.5525 -1.3972 35 1 4.2359 0.2707 -2.3786 36 1 2.9172 -3.1480 -5.3287 37 1 1.3264 -3.3086 -8.6288 38 1 -0.1883 0.6403 2.6175 39 1 1.1144 1.4604 3.5110 40 1 1.0271 1.5988 1.7387 41 1 1.4644 -0.8242 4.4586 42 1 2.3070 -2.0083 3.4308 43 1 4.0895 -2.1940 6.6481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593203713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:03 Heat of formation + Delta-G solvation = -61.922701 kcal Electronic energy + Delta-G solvation = -26927.004513 eV Core-core repulsion = 22907.017856 eV Total energy + Delta-G solvation = -4019.986657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.74842 -40.01769 -39.26773 -36.81677 -36.53538 -34.76550 -33.15832 -32.30649 -30.55279 -28.66496 -27.36944 -26.68359 -26.02821 -24.17687 -23.55680 -22.67960 -21.66098 -20.11271 -19.01190 -18.51776 -17.93959 -17.25909 -16.53231 -16.30539 -16.23785 -15.83791 -15.40021 -14.97044 -14.88930 -14.51168 -14.45509 -13.98940 -13.87272 -13.54444 -13.35492 -13.04582 -12.52947 -12.34674 -12.14773 -12.08797 -12.07724 -12.03950 -11.90595 -11.81230 -11.44111 -11.30333 -11.21615 -11.10324 -10.84093 -10.54055 -10.11923 -10.00144 -9.95530 -9.58653 -9.41666 -8.90190 -8.40452 -8.30934 -7.57971 -6.01009 -4.05425 -0.36751 0.54999 1.13699 1.82071 2.55657 2.67138 3.32187 3.39162 3.42966 3.51681 3.57787 3.66644 4.25102 4.41262 4.49005 4.52160 4.81295 4.90070 4.91721 5.02977 5.11138 5.15527 5.33211 5.40594 5.53361 5.60579 5.64832 5.71568 5.74628 5.89680 5.91393 5.96876 6.18197 6.24275 6.74221 7.11172 7.22604 7.28021 7.36055 7.48497 7.59441 7.95950 8.27203 8.47941 8.95131 9.20039 9.59749 11.07019 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021944 B = 0.002215 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.657311 B =12638.002257 C =13035.905280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.065 3.935 3 H 0.101 0.899 4 N -0.641 5.641 5 C 0.161 3.839 6 H 0.068 0.932 7 C -0.138 4.138 8 C 0.060 3.940 9 N -0.453 5.453 10 C 0.138 3.862 11 C -0.315 4.315 12 C 0.570 3.430 13 O -0.514 6.514 14 O -0.504 6.504 15 S 0.236 5.764 16 C 0.511 3.489 17 O -0.516 6.516 18 N -0.605 5.605 19 C 0.083 3.917 20 C 0.247 3.753 21 C -0.524 4.524 22 H 0.057 0.943 23 C 0.060 3.940 24 N -0.896 5.896 25 Si 0.898 3.102 26 H -0.281 1.281 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.352 0.648 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.193 0.807 37 H 0.420 0.580 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.031 0.969 42 H 0.043 0.957 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.891 5.460 -24.151 26.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.049 4.049 3 H 0.119 0.881 4 N -0.274 5.274 5 C 0.048 3.952 6 H 0.085 0.915 7 C -0.197 4.197 8 C -0.214 4.214 9 N -0.165 5.165 10 C -0.023 4.023 11 C -0.437 4.437 12 C 0.413 3.587 13 O -0.404 6.404 14 O -0.316 6.316 15 S 0.495 5.505 16 C 0.295 3.705 17 O -0.390 6.390 18 N -0.339 5.339 19 C -0.062 4.062 20 C 0.128 3.872 21 C -0.562 4.562 22 H 0.075 0.925 23 C -0.142 4.142 24 N -0.535 5.535 25 Si 0.725 3.275 26 H -0.207 1.207 27 H -0.211 1.211 28 H -0.199 1.199 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.172 0.828 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.210 0.790 37 H 0.279 0.721 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.061 0.939 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.265 5.842 -23.426 25.519 hybrid contribution 0.181 -0.505 -0.719 0.897 sum -8.085 5.337 -24.145 26.016 Atomic orbital electron populations 1.22738 0.95628 1.03343 1.03530 1.21613 0.93659 0.98861 0.90721 0.88125 1.60172 1.58682 1.07910 1.00641 1.20288 0.99723 0.91861 0.83356 0.91483 1.21862 0.95996 0.99758 1.02081 1.27908 0.96024 0.96132 1.01338 1.66164 1.23179 1.08306 1.18893 1.22884 0.93172 0.99554 0.86687 1.24928 1.13315 1.05249 1.00218 1.18990 0.77279 0.78078 0.84376 1.90974 1.33005 1.53293 1.63159 1.84563 1.67660 1.41987 1.37428 1.84085 1.39662 1.20162 1.06549 1.20000 0.81373 0.85391 0.83719 1.90690 1.36466 1.26057 1.85798 1.48121 1.50192 1.28348 1.07273 1.21756 0.93732 0.88294 1.02380 1.19258 0.94180 0.93652 0.80112 1.21436 1.04972 1.18861 1.10980 0.92494 1.24939 0.97911 0.94976 0.96369 1.69931 1.39112 1.25960 1.18479 0.86503 0.83742 0.78632 0.78581 1.20725 1.21115 1.19869 0.89692 0.92400 0.91844 0.82772 0.92369 0.90934 0.90397 0.79008 0.72103 0.93626 0.90892 0.92565 0.95128 0.93891 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.06 8.78 37.16 0.33 -1.73 16 2 C 0.07 0.90 2.01 -68.86 -0.14 0.77 16 3 H 0.10 1.24 6.38 -51.93 -0.33 0.91 16 4 N -0.64 -8.85 5.51 -102.16 -0.56 -9.42 16 5 C 0.16 1.67 2.92 -68.86 -0.20 1.47 16 6 H 0.07 0.53 7.11 -51.93 -0.37 0.16 16 7 C -0.14 -1.44 9.38 37.16 0.35 -1.09 16 8 C 0.06 0.62 5.89 -13.31 -0.08 0.54 16 9 N -0.45 -5.36 10.46 -11.26 -0.12 -5.48 16 10 C 0.14 1.34 11.20 -18.48 -0.21 1.14 16 11 C -0.31 -2.99 6.51 -36.79 -0.24 -3.23 16 12 C 0.57 5.27 8.30 34.06 0.28 5.55 16 13 O -0.51 -6.06 17.75 -19.36 -0.34 -6.40 16 14 O -0.50 -3.06 13.23 -40.96 -0.54 -3.61 16 15 S 0.24 2.05 23.00 -107.50 -2.47 -0.43 16 16 C 0.51 10.39 7.15 -10.98 -0.08 10.31 16 17 O -0.52 -13.15 16.01 5.55 0.09 -13.06 16 18 N -0.61 -12.48 2.86 -182.96 -0.52 -13.01 16 19 C 0.08 1.23 8.80 59.84 0.53 1.75 16 20 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 21 C -0.52 -14.86 9.39 -34.44 -0.32 -15.19 16 22 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 23 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 24 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 25 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 29 H 0.08 0.86 4.51 -51.93 -0.23 0.62 16 30 H 0.06 0.47 7.43 -51.93 -0.39 0.08 16 31 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.35 4.92 8.09 -39.30 -0.32 4.60 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.76 7.43 -51.93 -0.39 0.38 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.19 1.44 8.06 -52.48 -0.42 1.02 16 37 H 0.42 0.60 9.11 45.56 0.42 1.02 16 38 H 0.05 0.57 6.94 -51.93 -0.36 0.21 16 39 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 40 H 0.06 0.66 6.02 -51.93 -0.31 0.35 16 41 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 42 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 379.06 15.07 5.71 5.71 Total: -1.00 -37.30 379.06 -7.69 -44.99 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.74 Total: 1.42 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 0.09 Total: 8.32 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.47 Total: -53.93 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.80 Total: -23.07 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.47 Total: -0.43 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.30 -7.69 -44.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593203713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.937 kcal (2) G-P(sol) polarization free energy of solvation -37.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds