Wall clock time and date at job start Tue Mar 31 2020 23:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46821 * 2 1 4 4 N 1.46897 * 109.47192 * 120.00519 * 2 1 3 5 5 C 1.46909 * 110.99761 * 275.00032 * 4 2 1 6 6 H 1.08997 * 109.46918 * 34.99759 * 5 4 2 7 7 C 1.52995 * 109.47024 * 155.00171 * 5 4 2 8 8 C 1.50703 * 109.47232 * 294.99875 * 7 5 4 9 9 C 1.33644 * 126.03688 * 89.99906 * 8 7 5 10 10 N 1.31775 * 114.49992 * 180.02562 * 9 8 7 11 11 C 1.29031 * 117.12507 * 359.97438 * 10 9 8 12 12 S 1.70972 * 110.16705 * 359.72759 * 11 10 9 13 13 C 1.50696 * 109.47006 * 275.00095 * 5 4 2 14 14 O 1.20828 * 120.00163 * 0.02562 * 13 5 4 15 15 O 1.34230 * 120.00097 * 179.97438 * 13 5 4 16 16 C 1.50706 * 109.46913 * 240.00627 * 2 1 3 17 17 O 1.21281 * 119.99660 * 239.99632 * 16 2 1 18 18 N 1.34771 * 120.00094 * 59.99917 * 16 2 1 19 19 C 1.46501 * 120.00308 * 359.97438 * 18 16 2 20 20 C 1.46506 * 119.99594 * 179.97438 * 18 16 2 21 21 C 1.50699 * 109.46928 * 90.00049 * 20 18 16 22 22 H 1.08003 * 119.99963 * 0.02562 * 21 20 18 23 23 C 1.37873 * 119.99865 * 179.97438 * 21 20 18 24 24 N 1.31514 * 120.00518 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99987 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46922 * 90.00621 * 25 23 21 27 27 H 1.48500 * 109.47411 * 210.00442 * 25 23 21 28 28 H 1.48494 * 109.47378 * 330.00637 * 25 23 21 29 29 H 1.09000 * 109.46579 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47310 * 299.99576 * 1 2 3 31 31 H 1.09003 * 109.47197 * 60.00227 * 1 2 3 32 32 H 1.00893 * 111.00214 * 38.95022 * 4 2 1 33 33 H 1.08999 * 109.47207 * 54.99944 * 7 5 4 34 34 H 1.09002 * 109.47358 * 175.00312 * 7 5 4 35 35 H 1.08002 * 122.74831 * 0.02562 * 9 8 7 36 36 H 1.08004 * 124.91800 * 179.97438 * 11 10 9 37 37 H 0.96702 * 117.00347 * 179.97438 * 15 13 5 38 38 H 1.08999 * 109.46532 * 269.99942 * 19 18 16 39 39 H 1.09000 * 109.46877 * 29.99967 * 19 18 16 40 40 H 1.09000 * 109.47251 * 150.00072 * 19 18 16 41 41 H 1.09004 * 109.47073 * 209.99877 * 20 18 16 42 42 H 1.09000 * 109.47212 * 329.99960 * 20 18 16 43 43 H 0.96992 * 120.00316 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0825 0.2225 2.3469 6 1 1.2577 0.9328 2.2907 7 6 1.9771 -0.5799 3.6453 8 6 0.6191 -1.2283 3.7263 9 6 0.2969 -2.4390 3.2609 10 7 -0.9608 -2.7816 3.4536 11 6 -1.7174 -1.9276 4.0562 12 16 -0.8222 -0.5276 4.4584 13 6 3.3911 0.9694 2.3228 14 8 4.1894 0.7612 1.4399 15 8 3.6695 1.8667 3.2814 16 6 2.0323 -0.7103 -1.2306 17 8 2.7296 -1.6964 -1.1194 18 7 1.7067 -0.2498 -2.4546 19 6 0.8640 0.9411 -2.5890 20 6 2.1956 -0.9400 -3.6508 21 6 1.2034 -1.9974 -4.0613 22 1 0.2989 -2.1407 -3.4886 23 6 1.4497 -2.7813 -5.1684 24 7 2.5508 -2.6066 -5.8661 25 14 0.2202 -4.0925 -5.6768 26 1 -0.7666 -3.5069 -6.6193 27 1 0.9359 -5.2112 -6.3413 28 1 -0.4861 -4.6019 -4.4740 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.4496 -1.4979 1.4099 33 1 2.7488 -1.3495 3.6605 34 1 2.1125 0.0872 4.4967 35 1 1.0091 -3.0836 2.7672 36 1 -2.7638 -2.0772 4.2783 37 1 4.5215 2.3205 3.2240 38 1 -0.1838 0.6426 -2.6225 39 1 1.0272 1.5997 -1.7359 40 1 1.1217 1.4667 -3.5084 41 1 2.3165 -0.2211 -4.4612 42 1 3.1559 -1.4076 -3.4336 43 1 2.7243 -3.1583 -6.6447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593211334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:19 Heat of formation + Delta-G solvation = -58.967964 kcal Electronic energy + Delta-G solvation = -28188.626146 eV Core-core repulsion = 24168.767615 eV Total energy + Delta-G solvation = -4019.858530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.68965 -39.87824 -39.14648 -36.89802 -36.00707 -34.71629 -33.65893 -32.45577 -30.37227 -28.40241 -27.36572 -26.16355 -25.91235 -23.98761 -23.92276 -22.10119 -20.98115 -20.44660 -18.51722 -18.38083 -18.13620 -16.91831 -16.57732 -16.41622 -16.27526 -15.56492 -15.35923 -14.99113 -14.73516 -14.51987 -14.31367 -14.23565 -13.87753 -13.64963 -13.45116 -13.03103 -12.82535 -12.58356 -12.37378 -12.15847 -11.99651 -11.96094 -11.59109 -11.55768 -11.35712 -11.24816 -11.09180 -10.80429 -10.61806 -10.49753 -10.08841 -9.93714 -9.61366 -9.55745 -9.30164 -8.92335 -8.37938 -8.35475 -7.53314 -5.98313 -4.02793 0.32159 0.98755 1.38401 2.12997 2.51090 2.75016 3.33352 3.40104 3.43902 3.55858 3.65071 4.03320 4.27411 4.37232 4.43472 4.50108 4.76398 4.81018 4.95546 4.98697 5.14210 5.18579 5.21279 5.35477 5.38625 5.43662 5.53799 5.67977 5.76062 5.84565 5.95028 6.05651 6.25358 6.38278 6.63264 7.13532 7.20042 7.39371 7.53553 7.64037 7.85069 7.98632 8.30350 8.52235 8.97718 9.24778 9.62197 11.09732 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011697 B = 0.003454 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.175263 B = 8103.610793 C = 9629.838267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.072 3.928 3 H 0.093 0.907 4 N -0.644 5.644 5 C 0.106 3.894 6 H 0.085 0.915 7 C -0.039 4.039 8 C -0.227 4.227 9 C 0.043 3.957 10 N -0.464 5.464 11 C 0.021 3.979 12 S 0.122 5.878 13 C 0.471 3.529 14 O -0.472 6.472 15 O -0.525 6.525 16 C 0.515 3.485 17 O -0.515 6.515 18 N -0.606 5.606 19 C 0.085 3.915 20 C 0.247 3.753 21 C -0.523 4.523 22 H 0.056 0.944 23 C 0.061 3.939 24 N -0.895 5.895 25 Si 0.897 3.103 26 H -0.281 1.281 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.360 0.640 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.182 0.818 36 H 0.199 0.801 37 H 0.410 0.590 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.031 0.969 42 H 0.044 0.956 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.909 11.535 24.142 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.042 4.042 3 H 0.111 0.889 4 N -0.280 5.280 5 C -0.007 4.007 6 H 0.102 0.898 7 C -0.080 4.080 8 C -0.349 4.349 9 C -0.108 4.108 10 N -0.177 5.177 11 C -0.277 4.277 12 S 0.375 5.625 13 C 0.309 3.691 14 O -0.355 6.355 15 O -0.337 6.337 16 C 0.299 3.701 17 O -0.390 6.390 18 N -0.340 5.340 19 C -0.059 4.059 20 C 0.128 3.872 21 C -0.562 4.562 22 H 0.074 0.926 23 C -0.141 4.141 24 N -0.534 5.534 25 Si 0.725 3.275 26 H -0.207 1.207 27 H -0.211 1.211 28 H -0.199 1.199 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.185 0.815 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.199 0.801 36 H 0.216 0.784 37 H 0.269 0.731 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.428 11.105 23.961 27.181 hybrid contribution -0.629 -0.836 -0.734 1.278 sum -7.057 10.268 23.227 26.358 Atomic orbital electron populations 1.22704 0.95333 1.03629 1.03379 1.21524 0.93655 0.98335 0.90659 0.88866 1.59624 1.59243 1.08292 1.00849 1.20923 0.92284 0.94949 0.92503 0.89769 1.20143 0.91522 1.00042 0.96260 1.25883 1.00295 0.99784 1.08899 1.22017 0.92710 0.94908 1.01215 1.66364 1.04301 1.32464 1.14521 1.28487 1.04830 0.93059 1.01304 1.84035 1.02084 1.21995 1.54416 1.23342 0.89173 0.77609 0.79017 1.90823 1.47920 1.61646 1.35092 1.84483 1.44161 1.53197 1.51890 1.19893 0.81420 0.85137 0.83624 1.90668 1.36958 1.25545 1.85785 1.48087 1.50378 1.28205 1.07286 1.21738 0.95018 0.87821 1.01347 1.19274 0.96046 0.91820 0.80027 1.21429 1.05860 1.17903 1.11033 0.92575 1.24929 0.95566 0.97282 0.96342 1.69933 1.24820 1.40322 1.18359 0.86519 0.81045 0.81418 0.78565 1.20719 1.21091 1.19921 0.91625 0.92583 0.89569 0.81508 0.87678 0.88108 0.80079 0.78399 0.73135 0.93065 0.92904 0.91488 0.95139 0.93827 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 8.78 37.16 0.33 -2.13 16 2 C 0.07 1.12 1.83 -68.86 -0.13 0.99 16 3 H 0.09 1.36 6.90 -51.93 -0.36 1.00 16 4 N -0.64 -9.31 5.08 -102.17 -0.52 -9.83 16 5 C 0.11 1.11 2.36 -68.86 -0.16 0.95 16 6 H 0.08 0.75 7.11 -51.93 -0.37 0.38 16 7 C -0.04 -0.32 5.31 -27.88 -0.15 -0.47 16 8 C -0.23 -1.95 5.46 -35.92 -0.20 -2.15 16 9 C 0.04 0.45 9.77 -19.19 -0.19 0.26 16 10 N -0.46 -5.17 10.54 -15.75 -0.17 -5.33 16 11 C 0.02 0.17 12.23 51.59 0.63 0.80 16 12 S 0.12 0.83 23.22 -107.50 -2.50 -1.66 16 13 C 0.47 5.51 7.38 36.00 0.27 5.78 16 14 O -0.47 -7.86 17.02 -18.75 -0.32 -8.18 16 15 O -0.52 -4.12 13.23 -39.26 -0.52 -4.64 16 16 C 0.51 11.28 7.14 -10.99 -0.08 11.21 16 17 O -0.52 -13.78 16.01 5.56 0.09 -13.69 16 18 N -0.61 -13.34 2.86 -182.95 -0.52 -13.86 16 19 C 0.08 1.38 8.85 59.85 0.53 1.91 16 20 C 0.25 6.72 5.20 -5.19 -0.03 6.69 16 21 C -0.52 -15.21 9.39 -34.44 -0.32 -15.54 16 22 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 23 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 24 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 25 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 29 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 30 H 0.06 0.56 7.43 -51.93 -0.39 0.17 16 31 H 0.09 1.07 4.53 -51.93 -0.24 0.84 16 32 H 0.36 5.05 5.64 -39.30 -0.22 4.83 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.10 0.63 8.00 -51.93 -0.42 0.21 16 35 H 0.18 1.89 7.73 -52.49 -0.41 1.49 16 36 H 0.20 0.98 8.06 -52.48 -0.42 0.56 16 37 H 0.41 1.73 9.10 45.56 0.41 2.14 16 38 H 0.05 0.78 6.95 -51.93 -0.36 0.42 16 39 H 0.05 0.68 6.01 -51.93 -0.31 0.37 16 40 H 0.07 1.05 7.89 -51.93 -0.41 0.64 16 41 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 42 H 0.04 1.35 7.42 -51.93 -0.39 0.96 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -39.02 374.32 -7.36 -46.38 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -4.67 Total: 4.38 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 0.41 Total: 9.97 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.47 Total: -55.55 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.75 Total: -26.50 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.50 Total: -1.66 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -39.02 -7.36 -46.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593211334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.586 kcal (2) G-P(sol) polarization free energy of solvation -39.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds