Wall clock time and date at job start Tue Mar 31 2020 23:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46823 * 2 1 4 4 N 1.46900 * 109.46916 * 239.99983 * 2 1 3 5 5 C 1.46901 * 110.99890 * 85.00035 * 4 2 1 6 6 H 1.09002 * 109.47401 * 34.99821 * 5 4 2 7 7 C 1.53000 * 109.46769 * 155.00113 * 5 4 2 8 8 C 1.50698 * 109.46984 * 294.99593 * 7 5 4 9 9 C 1.33642 * 126.04026 * 90.00120 * 8 7 5 10 10 N 1.31778 * 114.50100 * 179.97438 * 9 8 7 11 11 C 1.29022 * 117.13111 * 0.02562 * 10 9 8 12 12 S 1.70976 * 110.16071 * 359.72282 * 11 10 9 13 13 C 1.50699 * 109.47121 * 274.99849 * 5 4 2 14 14 O 1.20827 * 120.00172 * 0.02562 * 13 5 4 15 15 O 1.34231 * 120.00242 * 180.02562 * 13 5 4 16 16 C 1.50701 * 109.46968 * 119.99810 * 2 1 3 17 17 O 1.21274 * 119.99791 * 120.00194 * 16 2 1 18 18 N 1.34774 * 119.99892 * 299.99528 * 16 2 1 19 19 C 1.46499 * 120.00508 * 0.02562 * 18 16 2 20 20 C 1.46504 * 119.99685 * 179.97438 * 18 16 2 21 21 C 1.50699 * 109.46906 * 90.00504 * 20 18 16 22 22 H 1.08003 * 120.00351 * 0.02562 * 21 20 18 23 23 C 1.37872 * 120.00088 * 180.02562 * 21 20 18 24 24 N 1.31513 * 120.00236 * 359.97438 * 23 21 20 25 25 Si 1.86810 * 120.00159 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46719 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46940 * 119.99814 * 25 23 21 28 28 H 1.48492 * 109.46984 * 239.99812 * 25 23 21 29 29 H 1.09000 * 109.47524 * 180.02562 * 1 2 3 30 30 H 1.09013 * 109.47302 * 300.00440 * 1 2 3 31 31 H 1.08996 * 109.47481 * 59.99993 * 1 2 3 32 32 H 1.00898 * 110.99796 * 321.04257 * 4 2 1 33 33 H 1.08990 * 109.47170 * 54.99770 * 7 5 4 34 34 H 1.09001 * 109.46952 * 174.99846 * 7 5 4 35 35 H 1.08006 * 122.74303 * 0.02562 * 9 8 7 36 36 H 1.07995 * 124.92352 * 179.97438 * 11 10 9 37 37 H 0.96696 * 117.00233 * 180.02562 * 15 13 5 38 38 H 1.09003 * 109.47138 * 89.99156 * 19 18 16 39 39 H 1.08996 * 109.47352 * 209.99942 * 19 18 16 40 40 H 1.09003 * 109.46647 * 329.99879 * 19 18 16 41 41 H 1.08997 * 109.47350 * 210.00051 * 20 18 16 42 42 H 1.08994 * 109.47197 * 330.00899 * 20 18 16 43 43 H 0.97004 * 120.00382 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3469 6 1 2.3648 1.2177 -2.0031 7 6 3.1220 -0.2853 -3.3479 8 6 4.4912 -0.2324 -2.7205 9 6 5.0734 -1.2104 -2.0201 10 7 6.2789 -0.9200 -1.5740 11 6 6.7459 0.2486 -1.8585 12 16 5.6101 1.1270 -2.7869 13 6 0.7323 0.2858 -3.0134 14 8 -0.1880 -0.3643 -2.5771 15 8 0.5520 1.0644 -4.0919 16 6 2.0323 -0.7104 1.2305 17 8 2.7295 -1.6964 1.1192 18 7 1.7067 -0.2498 2.4546 19 6 0.8641 0.9410 2.5890 20 6 2.1946 -0.9408 3.6508 21 6 3.5223 -0.3578 4.0611 22 1 3.9589 0.4471 3.4885 23 6 4.1798 -0.8521 5.1676 24 7 3.6480 -1.8319 5.8653 25 14 5.8253 -0.1290 5.6768 26 1 6.2020 0.9555 4.7349 27 1 5.7189 0.4243 7.0508 28 1 6.8624 -1.1913 5.6498 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.4495 -1.4979 -1.4100 33 1 2.8884 -1.3134 -3.6242 34 1 3.1060 0.3429 -4.2386 35 1 4.5954 -2.1612 -1.8356 36 1 7.7154 0.6171 -1.5576 37 1 -0.3316 1.0726 -4.4847 38 1 -0.1838 0.6428 2.6224 39 1 1.1219 1.4666 3.5084 40 1 1.0273 1.5997 1.7360 41 1 1.4766 -0.8151 4.4612 42 1 2.3154 -2.0020 3.4335 43 1 4.1108 -2.1799 6.6436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593211338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:25 Heat of formation + Delta-G solvation = -57.594455 kcal Electronic energy + Delta-G solvation = -28374.410007 eV Core-core repulsion = 24354.611036 eV Total energy + Delta-G solvation = -4019.798971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.01101 -39.46153 -39.14776 -36.96664 -36.05723 -34.74700 -33.61650 -32.46186 -30.25044 -28.18344 -27.26394 -26.08558 -25.73894 -23.94164 -23.71618 -22.04856 -21.13732 -20.03167 -18.69258 -18.38375 -18.03158 -17.31271 -16.52268 -16.48542 -16.20084 -15.43009 -15.39148 -14.85824 -14.52704 -14.37948 -14.20829 -13.89071 -13.72972 -13.45004 -13.38976 -12.92845 -12.82202 -12.65718 -12.32842 -12.13861 -12.07514 -11.98133 -11.59409 -11.34326 -11.19292 -11.13858 -11.05866 -10.81069 -10.76512 -10.53933 -10.10632 -9.55488 -9.50483 -9.25631 -8.98636 -8.77157 -8.45965 -8.38934 -7.56067 -5.99460 -4.03660 0.78499 1.41168 1.79161 1.81991 2.66234 3.08658 3.33268 3.40920 3.44001 3.53422 3.56885 4.24287 4.43347 4.50165 4.55964 4.67033 4.80211 5.00005 5.08846 5.15227 5.23766 5.24364 5.35411 5.42441 5.51698 5.57203 5.75548 5.81872 5.87077 5.93744 6.05794 6.19921 6.35308 6.36809 6.60351 7.10373 7.18646 7.49893 7.52714 7.61038 7.88528 7.97485 8.28860 8.49240 8.96728 9.20496 9.61559 11.08624 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009923 B = 0.004213 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.061141 B = 6644.247581 C = 8781.601034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.064 3.936 3 H 0.095 0.905 4 N -0.627 5.627 5 C 0.102 3.898 6 H 0.118 0.882 7 C -0.019 4.019 8 C -0.211 4.211 9 C 0.075 3.925 10 N -0.464 5.464 11 C 0.024 3.976 12 S 0.088 5.912 13 C 0.446 3.554 14 O -0.501 6.501 15 O -0.515 6.515 16 C 0.513 3.487 17 O -0.517 6.517 18 N -0.604 5.604 19 C 0.083 3.917 20 C 0.248 3.752 21 C -0.522 4.522 22 H 0.056 0.944 23 C 0.061 3.939 24 N -0.895 5.895 25 Si 0.897 3.103 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.282 1.282 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.361 0.639 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.178 0.822 36 H 0.195 0.805 37 H 0.407 0.593 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.031 0.969 42 H 0.043 0.957 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 9.518 -22.148 24.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.049 4.049 3 H 0.113 0.887 4 N -0.259 5.259 5 C -0.012 4.012 6 H 0.135 0.865 7 C -0.060 4.060 8 C -0.332 4.332 9 C -0.075 4.075 10 N -0.176 5.176 11 C -0.274 4.274 12 S 0.339 5.661 13 C 0.285 3.715 14 O -0.389 6.389 15 O -0.326 6.326 16 C 0.297 3.703 17 O -0.392 6.392 18 N -0.338 5.338 19 C -0.061 4.061 20 C 0.128 3.872 21 C -0.561 4.561 22 H 0.074 0.926 23 C -0.141 4.141 24 N -0.535 5.535 25 Si 0.724 3.276 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.208 1.208 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.183 0.817 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.195 0.805 36 H 0.212 0.788 37 H 0.265 0.735 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.061 0.939 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.246 9.349 -21.660 23.814 hybrid contribution -1.063 -0.148 0.349 1.129 sum -4.309 9.202 -21.310 23.609 Atomic orbital electron populations 1.22866 0.94603 1.03846 1.03403 1.21668 0.94556 0.98216 0.90502 0.88739 1.60525 1.57275 1.07846 1.00274 1.21670 0.87758 1.00085 0.91655 0.86452 1.19881 0.87052 1.03565 0.95516 1.25449 1.01063 0.96953 1.09722 1.21794 0.89469 1.01253 0.94975 1.66320 1.13369 1.17350 1.20575 1.28363 1.04408 0.93132 1.01545 1.83805 1.10690 1.20275 1.51330 1.25079 0.92743 0.75713 0.77936 1.90746 1.43880 1.42057 1.62215 1.84587 1.40560 1.64083 1.43393 1.19949 0.81241 0.85368 0.83729 1.90674 1.36566 1.26132 1.85855 1.48092 1.50087 1.28321 1.07267 1.21752 0.93809 0.88286 1.02229 1.19258 0.94120 0.93699 0.80087 1.21455 1.04769 1.18885 1.10985 0.92557 1.24921 0.97858 0.94972 0.96313 1.69942 1.38916 1.26181 1.18434 0.86464 0.83947 0.79099 0.78050 1.19860 1.21044 1.20828 0.91725 0.90758 0.91271 0.81675 0.88938 0.88978 0.80486 0.78846 0.73463 0.93570 0.90920 0.92727 0.95145 0.93878 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 7.63 37.16 0.28 -2.18 16 2 C 0.06 0.95 2.19 -68.86 -0.15 0.80 16 3 H 0.09 1.29 6.69 -51.93 -0.35 0.94 16 4 N -0.63 -8.41 5.13 -102.17 -0.52 -8.93 16 5 C 0.10 1.01 2.49 -68.86 -0.17 0.84 16 6 H 0.12 1.11 7.43 -51.93 -0.39 0.73 16 7 C -0.02 -0.17 5.39 -27.88 -0.15 -0.32 16 8 C -0.21 -2.43 5.60 -35.92 -0.20 -2.63 16 9 C 0.08 1.10 11.14 -19.19 -0.21 0.88 16 10 N -0.46 -7.40 10.54 -15.75 -0.17 -7.57 16 11 C 0.02 0.29 12.23 51.58 0.63 0.93 16 12 S 0.09 0.90 23.22 -107.50 -2.50 -1.60 16 13 C 0.45 4.06 6.91 36.01 0.25 4.31 16 14 O -0.50 -5.85 13.17 -18.75 -0.25 -6.10 16 15 O -0.52 -3.30 13.23 -39.26 -0.52 -3.82 16 16 C 0.51 10.73 7.14 -10.99 -0.08 10.65 16 17 O -0.52 -13.16 16.01 5.56 0.09 -13.07 16 18 N -0.60 -12.96 2.86 -182.96 -0.52 -13.48 16 19 C 0.08 1.33 8.80 59.85 0.53 1.86 16 20 C 0.25 6.61 5.16 -5.19 -0.03 6.58 16 21 C -0.52 -15.13 9.39 -34.44 -0.32 -15.46 16 22 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 23 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 24 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 25 Si 0.90 22.45 29.54 -169.99 -5.02 17.43 16 26 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 29 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 30 H 0.07 0.92 4.53 -51.92 -0.24 0.68 16 31 H 0.07 0.83 5.07 -51.93 -0.26 0.57 16 32 H 0.36 4.97 7.51 -39.29 -0.30 4.67 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.63 7.99 -51.93 -0.42 0.22 16 35 H 0.18 2.64 8.06 -52.48 -0.42 2.21 16 36 H 0.19 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.41 1.07 9.10 45.56 0.41 1.49 16 38 H 0.05 0.64 6.95 -51.93 -0.36 0.28 16 39 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 40 H 0.05 0.72 6.01 -51.93 -0.31 0.41 16 41 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 42 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -37.16 371.20 -7.46 -44.62 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.66 Total: 5.38 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 0.28 Total: 7.95 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.48 Total: -56.39 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.68 Total: -22.99 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.50 Total: -1.60 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.16 -7.46 -44.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593211338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.974 kcal (2) G-P(sol) polarization free energy of solvation -37.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds