Wall clock time and date at job start Tue Mar 31 2020 22:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 5 5 C 1.46905 * 110.99870 * 274.99736 * 4 2 1 6 6 C 1.52993 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47393 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99811 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00670 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99548 * 0.02562 * 9 7 6 11 11 C 1.46497 * 120.00313 * 180.02562 * 9 7 6 12 12 C 1.50693 * 109.47180 * 89.99995 * 11 9 7 13 13 H 1.07994 * 120.00268 * 359.97438 * 12 11 9 14 14 C 1.37881 * 119.99610 * 179.97438 * 12 11 9 15 15 N 1.31515 * 120.00162 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99707 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47113 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47311 * 119.99854 * 16 14 12 19 19 H 1.48503 * 109.47433 * 239.99998 * 16 14 12 20 20 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 21 21 N 1.29397 * 124.70692 * 284.69550 * 20 2 1 22 22 C 1.30916 * 117.46981 * 179.83610 * 21 20 2 23 23 C 1.36759 * 113.92736 * 0.44897 * 22 21 20 24 24 C 1.46502 * 126.17577 * 179.77081 * 23 22 21 25 25 O 1.21609 * 119.99942 * 179.97438 * 24 23 22 26 26 O 1.34878 * 120.00046 * 359.97438 * 24 23 22 27 27 S 1.70921 * 124.70972 * 105.00329 * 20 2 1 28 28 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 30 30 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 31 31 H 1.00901 * 111.00067 * 38.94911 * 4 2 1 32 32 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 33 33 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 34 34 H 1.09001 * 109.47393 * 299.99719 * 6 5 4 35 35 H 1.08998 * 109.47408 * 60.00073 * 6 5 4 36 36 H 1.08993 * 109.47425 * 89.99743 * 10 9 7 37 37 H 1.09000 * 109.47062 * 210.00264 * 10 9 7 38 38 H 1.09006 * 109.46838 * 329.99305 * 10 9 7 39 39 H 1.09002 * 109.47135 * 210.00275 * 11 9 7 40 40 H 1.09000 * 109.46712 * 329.99755 * 11 9 7 41 41 H 0.97006 * 119.99615 * 179.97438 * 15 14 12 42 42 H 1.07998 * 123.03715 * 180.21288 * 22 21 20 43 43 H 0.96696 * 116.99919 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5962 -0.5329 3.5741 7 6 2.6601 0.4056 4.7515 8 8 2.3279 1.5649 4.6216 9 7 3.0864 -0.0430 5.9488 10 6 3.4882 -1.4431 6.1055 11 6 3.1479 0.8693 7.0933 12 6 1.8348 0.8379 7.8319 13 1 1.0342 0.2023 7.4833 14 6 1.6554 1.6207 8.9527 15 7 2.6301 2.3950 9.3769 16 14 0.0278 1.5813 9.8686 17 1 -0.8976 0.6365 9.1931 18 1 0.2572 1.1360 11.2666 19 1 -0.5703 2.9405 9.8739 20 6 2.0323 -0.7104 -1.2304 21 7 2.0234 -1.9937 -1.3954 22 6 2.4927 -2.4606 -2.5249 23 6 2.9431 -1.4935 -3.3805 24 6 3.5231 -1.7147 -4.7075 25 8 3.8882 -0.7675 -5.3771 26 8 3.6523 -2.9689 -5.1865 27 16 2.6996 0.0668 -2.5987 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.4495 -1.4979 1.4100 32 1 2.7589 1.0462 2.1182 33 1 1.0871 0.6163 2.5525 34 1 1.9202 -1.3567 3.8030 35 1 3.5917 -0.9263 3.3683 36 1 4.5529 -1.5415 5.8940 37 1 3.2894 -1.7659 7.1274 38 1 2.9210 -2.0637 5.4117 39 1 3.9493 0.5579 7.7635 40 1 3.3424 1.8821 6.7405 41 1 2.5037 2.9460 10.1652 42 1 2.5250 -3.5146 -2.7583 43 1 4.0409 -3.0648 -6.0667 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593256322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:51 Heat of formation + Delta-G solvation = -79.454843 kcal Electronic energy + Delta-G solvation = -25972.577947 eV Core-core repulsion = 21951.831039 eV Total energy + Delta-G solvation = -4020.746908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.73647 -39.94724 -39.07209 -37.20218 -36.54614 -34.82673 -33.00782 -32.49601 -30.68768 -28.96949 -27.48017 -26.73453 -25.72490 -23.81182 -23.56382 -22.62454 -21.79380 -20.22316 -18.76965 -18.45852 -17.91082 -17.16887 -16.56684 -16.43812 -16.26874 -15.86311 -15.38846 -15.26531 -15.03664 -14.62182 -14.49326 -14.24751 -14.12516 -13.83241 -13.25192 -13.05647 -12.60631 -12.28676 -12.19197 -12.14407 -12.10313 -12.04086 -11.85415 -11.76317 -11.61987 -11.40595 -11.18515 -11.06843 -10.84996 -10.58386 -10.17401 -10.05271 -9.96831 -9.62185 -9.40330 -8.92042 -8.67196 -8.45311 -7.64584 -6.05749 -4.10507 -0.33304 0.57109 1.17380 1.81672 2.54048 2.66533 3.28124 3.35095 3.38099 3.44659 3.58871 3.72181 4.20094 4.38986 4.44739 4.52007 4.64823 4.80335 4.90092 5.07286 5.17708 5.22463 5.27700 5.35980 5.40963 5.58070 5.59897 5.77729 5.82280 5.90361 5.92067 6.01130 6.05495 6.22353 6.69306 7.04410 7.14820 7.19066 7.34642 7.43706 7.53445 7.90758 8.22293 8.41538 8.89009 9.08475 9.54632 11.02309 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.027530 B = 0.001759 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.810424 B =15914.493576 C =16148.647510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.156 3.844 3 H 0.105 0.895 4 N -0.676 5.676 5 C 0.074 3.926 6 C -0.136 4.136 7 C 0.505 3.495 8 O -0.546 6.546 9 N -0.603 5.603 10 C 0.084 3.916 11 C 0.244 3.756 12 C -0.525 4.525 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.898 3.102 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.082 3.918 21 N -0.470 5.470 22 C 0.138 3.862 23 C -0.320 4.320 24 C 0.569 3.431 25 O -0.514 6.514 26 O -0.506 6.506 27 S 0.244 5.756 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.352 0.648 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.032 0.968 40 H 0.044 0.956 41 H 0.263 0.737 42 H 0.190 0.810 43 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.029 -11.769 -26.698 29.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.042 3.958 3 H 0.123 0.877 4 N -0.308 5.308 5 C -0.055 4.055 6 C -0.177 4.177 7 C 0.291 3.709 8 O -0.424 6.424 9 N -0.335 5.335 10 C -0.061 4.061 11 C 0.125 3.875 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.726 3.274 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.192 4.192 21 N -0.183 5.183 22 C -0.023 4.023 23 C -0.443 4.443 24 C 0.412 3.588 25 O -0.404 6.404 26 O -0.318 6.318 27 S 0.504 5.496 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.171 0.829 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.207 0.793 43 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 0.443 -9.839 -26.356 28.136 hybrid contribution -1.401 -1.151 0.044 1.814 sum -0.958 -10.990 -26.312 28.531 Atomic orbital electron populations 1.22503 0.94129 1.03640 1.03554 1.20142 0.93834 0.96325 0.85544 0.87732 1.60334 1.57503 1.10009 1.02919 1.21748 1.01098 0.94604 0.88006 1.21587 1.03700 0.98987 0.93426 1.20249 0.78160 0.88561 0.83934 1.90668 1.48767 1.18777 1.84223 1.48157 1.63508 1.10887 1.10911 1.21642 0.98647 0.82950 1.02828 1.19292 0.97107 0.89455 0.81678 1.21466 0.99349 1.25170 1.10434 0.92452 1.24951 0.96949 0.95095 0.97222 1.69946 1.31949 1.26700 1.24750 0.86441 0.83650 0.77946 0.79357 1.19838 1.20956 1.20884 1.27800 0.98239 0.92892 1.00257 1.66079 1.19166 1.12005 1.21061 1.22758 0.91937 1.01250 0.86403 1.24868 1.20040 0.98577 1.00783 1.19011 0.74709 0.80682 0.84387 1.90977 1.47304 1.42980 1.59121 1.84554 1.77280 1.30085 1.39897 1.84172 1.52092 1.05450 1.07923 0.91148 0.90528 0.91574 0.82880 0.89953 0.93631 0.89559 0.88765 0.93712 0.90856 0.92353 0.95029 0.93832 0.92768 0.79286 0.72156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 9.14 37.16 0.34 -1.01 16 2 C 0.16 1.37 3.08 -68.87 -0.21 1.15 16 3 H 0.10 0.85 7.80 -51.93 -0.40 0.45 16 4 N -0.68 -6.85 6.20 -107.95 -0.67 -7.52 16 5 C 0.07 0.93 4.77 -3.82 -0.02 0.91 16 6 C -0.14 -1.86 4.51 -27.89 -0.13 -1.99 16 7 C 0.50 10.07 7.67 -10.99 -0.08 9.99 16 8 O -0.55 -13.23 15.56 5.55 0.09 -13.15 16 9 N -0.60 -12.57 2.86 -182.96 -0.52 -13.09 16 10 C 0.08 1.29 10.24 59.85 0.61 1.90 16 11 C 0.24 6.36 5.16 -5.20 -0.03 6.34 16 12 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 13 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 16 Si 0.90 21.75 29.54 -169.99 -5.02 16.72 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 C 0.08 0.75 6.24 -13.31 -0.08 0.67 16 21 N -0.47 -4.55 10.45 -11.26 -0.12 -4.67 16 22 C 0.14 1.15 11.20 -18.48 -0.21 0.94 16 23 C -0.32 -2.86 6.51 -36.79 -0.24 -3.10 16 24 C 0.57 5.03 8.30 34.06 0.28 5.31 16 25 O -0.51 -5.98 17.75 -19.35 -0.34 -6.33 16 26 O -0.51 -2.77 13.23 -40.98 -0.54 -3.31 16 27 S 0.24 2.08 23.00 -107.50 -2.47 -0.39 16 28 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 29 H 0.08 0.61 7.45 -51.92 -0.39 0.23 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.35 3.35 8.47 -39.29 -0.33 3.01 16 32 H 0.08 1.11 8.01 -51.93 -0.42 0.70 16 33 H 0.05 0.61 7.39 -51.93 -0.38 0.22 16 34 H 0.09 1.03 7.40 -51.93 -0.38 0.65 16 35 H 0.09 1.16 8.11 -51.93 -0.42 0.74 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 38 H 0.06 0.73 6.44 -51.93 -0.33 0.39 16 39 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 40 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.19 1.12 8.06 -52.49 -0.42 0.69 16 43 H 0.42 0.40 9.11 45.56 0.42 0.81 16 LS Contribution 387.22 15.07 5.84 5.84 Total: -1.00 -36.19 387.22 -8.32 -44.51 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.11 Total: -0.38 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -0.18 Total: 7.56 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.57 Total: -51.08 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.80 Total: -22.79 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.47 Total: -0.39 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.19 -8.32 -44.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593256322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.940 kcal (2) G-P(sol) polarization free energy of solvation -36.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds