Wall clock time and date at job start Tue Mar 31 2020 22:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 N 1.46903 * 109.47500 * 239.99656 * 2 1 3 5 5 C 1.46898 * 110.99673 * 84.99841 * 4 2 1 6 6 C 1.53006 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47184 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99801 * 359.97438 * 9 7 6 11 11 C 1.46504 * 119.99735 * 179.97438 * 9 7 6 12 12 C 1.50697 * 109.47527 * 89.99956 * 11 9 7 13 13 H 1.08009 * 119.99486 * 359.97438 * 12 11 9 14 14 C 1.37868 * 120.00223 * 179.97438 * 12 11 9 15 15 N 1.31519 * 120.00106 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00029 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47322 * 89.99966 * 16 14 12 18 18 H 1.48506 * 109.46867 * 209.99926 * 16 14 12 19 19 H 1.48505 * 109.46823 * 329.99594 * 16 14 12 20 20 C 1.50708 * 109.47150 * 119.99765 * 2 1 3 21 21 N 1.29390 * 124.70428 * 75.02894 * 20 2 1 22 22 C 1.30908 * 117.46559 * 179.97438 * 21 20 2 23 23 C 1.36761 * 113.93304 * 359.97438 * 22 21 20 24 24 C 1.46499 * 126.17871 * 180.02562 * 23 22 21 25 25 O 1.21609 * 119.99946 * 180.02562 * 24 23 22 26 26 O 1.34885 * 120.00018 * 0.02562 * 24 23 22 27 27 S 1.70921 * 124.70335 * 254.72372 * 20 2 1 28 28 H 1.08994 * 109.47047 * 300.00187 * 1 2 3 29 29 H 1.08996 * 109.46853 * 60.00246 * 1 2 3 30 30 H 1.08998 * 109.46692 * 180.02562 * 1 2 3 31 31 H 1.00897 * 110.99542 * 321.04983 * 4 2 1 32 32 H 1.09001 * 109.47392 * 60.00807 * 5 4 2 33 33 H 1.09001 * 109.47520 * 300.00529 * 5 4 2 34 34 H 1.09001 * 109.47002 * 299.99782 * 6 5 4 35 35 H 1.08993 * 109.46955 * 60.00219 * 6 5 4 36 36 H 1.08999 * 109.46908 * 90.00559 * 10 9 7 37 37 H 1.09000 * 109.47065 * 210.00008 * 10 9 7 38 38 H 1.08990 * 109.47304 * 330.00300 * 10 9 7 39 39 H 1.09004 * 109.46561 * 209.99850 * 11 9 7 40 40 H 1.08998 * 109.47073 * 329.99510 * 11 9 7 41 41 H 0.97000 * 119.99819 * 180.02562 * 15 14 12 42 42 H 1.08006 * 123.03330 * 179.97438 * 22 21 20 43 43 H 0.96703 * 116.99817 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5952 -0.5333 -3.5744 7 6 2.6602 0.4055 -4.7514 8 8 2.3286 1.5649 -4.6214 9 7 3.0858 -0.0434 -5.9488 10 6 3.4857 -1.4439 -6.1060 11 6 3.1484 0.8692 -7.0932 12 6 4.5046 1.5246 -7.1395 13 1 5.2457 1.2854 -6.3911 14 6 4.7994 2.4292 -8.1373 15 7 3.8971 2.7200 -9.0489 16 14 6.4804 3.2421 -8.1943 17 1 7.4025 2.4153 -9.0135 18 1 6.3568 4.5927 -8.7991 19 1 7.0180 3.3645 -6.8154 20 6 2.0324 -0.7104 1.2306 21 7 2.0188 -1.9934 1.3976 22 6 2.4924 -2.4605 2.5251 23 6 2.9433 -1.4933 3.3805 24 6 3.5239 -1.7146 4.7072 25 8 3.8894 -0.7674 5.3766 26 8 3.6530 -2.9688 5.1863 27 16 2.7058 0.0666 2.5959 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.4496 -1.4979 -1.4099 32 1 2.7589 1.0461 -2.1182 33 1 1.0871 0.6163 -2.5525 34 1 3.5905 -0.9273 -3.3690 35 1 1.9185 -1.3566 -3.8029 36 1 2.6195 -2.0388 -6.3954 37 1 4.2519 -1.5186 -6.8777 38 1 3.8833 -1.8164 -5.1620 39 1 2.9838 0.3093 -8.0138 40 1 2.3786 1.6341 -6.9905 41 1 4.1047 3.3562 -9.7510 42 1 2.5241 -3.5145 2.7588 43 1 4.0413 -3.0647 6.0667 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593256323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:54 Heat of formation + Delta-G solvation = -79.267150 kcal Electronic energy + Delta-G solvation = -25995.519836 eV Core-core repulsion = 21974.781067 eV Total energy + Delta-G solvation = -4020.738769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.72757 -39.94049 -39.07302 -37.20535 -36.53573 -34.82612 -33.00609 -32.48846 -30.68244 -28.97193 -27.47788 -26.73331 -25.72337 -23.80918 -23.55614 -22.61972 -21.79329 -20.21663 -18.76325 -18.45618 -17.90496 -17.16086 -16.60429 -16.39297 -16.25865 -15.82671 -15.48931 -15.23044 -14.98083 -14.61823 -14.48267 -14.29448 -14.07573 -13.83280 -13.28723 -13.06438 -12.61660 -12.26187 -12.19090 -12.16036 -12.09379 -12.03157 -11.83555 -11.74860 -11.60938 -11.39496 -11.17602 -11.07662 -10.86506 -10.56238 -10.15970 -10.04918 -9.95867 -9.62836 -9.39588 -8.91771 -8.67167 -8.43949 -7.64616 -6.04668 -4.09381 -0.32457 0.58085 1.18356 1.82482 2.54815 2.67425 3.29958 3.36240 3.39078 3.45352 3.59217 3.72064 4.20490 4.39330 4.45817 4.52729 4.64089 4.80248 4.90957 5.06786 5.16291 5.22243 5.28541 5.36169 5.40904 5.58078 5.61266 5.74040 5.78948 5.91309 5.92539 6.01246 6.07240 6.23317 6.69323 7.04539 7.15003 7.19541 7.35532 7.43528 7.53675 7.91752 8.23163 8.41597 8.89771 9.08719 9.55776 11.03355 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017937 B = 0.001883 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.682451 B =14865.876376 C =15393.277733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.156 3.844 3 H 0.105 0.895 4 N -0.675 5.675 5 C 0.075 3.925 6 C -0.136 4.136 7 C 0.505 3.495 8 O -0.546 6.546 9 N -0.603 5.603 10 C 0.083 3.917 11 C 0.244 3.756 12 C -0.525 4.525 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.082 3.918 21 N -0.470 5.470 22 C 0.138 3.862 23 C -0.320 4.320 24 C 0.569 3.431 25 O -0.514 6.514 26 O -0.506 6.506 27 S 0.245 5.755 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.351 0.649 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.031 0.969 40 H 0.043 0.957 41 H 0.263 0.737 42 H 0.190 0.810 43 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.774 -13.238 25.211 29.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.042 3.958 3 H 0.123 0.877 4 N -0.307 5.307 5 C -0.054 4.054 6 C -0.177 4.177 7 C 0.291 3.709 8 O -0.424 6.424 9 N -0.335 5.335 10 C -0.061 4.061 11 C 0.125 3.875 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.192 4.192 21 N -0.183 5.183 22 C -0.024 4.024 23 C -0.443 4.443 24 C 0.412 3.588 25 O -0.404 6.404 26 O -0.318 6.318 27 S 0.505 5.495 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.171 0.829 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.207 0.793 43 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -5.389 -11.323 24.845 27.830 hybrid contribution 0.467 -0.685 0.439 0.938 sum -4.922 -12.008 25.283 28.420 Atomic orbital electron populations 1.22495 0.94166 1.03593 1.03505 1.20145 0.93800 0.96363 0.85541 0.87716 1.60317 1.57508 1.09987 1.02925 1.21751 1.00980 0.94675 0.88024 1.21590 1.03755 0.98875 0.93487 1.20245 0.78242 0.88441 0.83973 1.90665 1.49501 1.18487 1.83765 1.48160 1.63213 1.10751 1.11347 1.21643 0.99749 0.82685 1.02025 1.19289 0.97953 0.88481 0.81764 1.21431 0.98840 1.24575 1.11570 0.92476 1.24946 0.97410 0.96385 0.95467 1.69935 1.33905 1.34591 1.14990 0.86492 0.83909 0.78779 0.78216 1.20645 1.21087 1.19886 1.27794 0.98251 0.92914 1.00289 1.66072 1.19234 1.11989 1.21032 1.22752 0.91957 1.01238 0.86429 1.24871 1.20029 0.98596 1.00764 1.19012 0.74713 0.80683 0.84392 1.90978 1.47273 1.42978 1.59128 1.84556 1.77303 1.30085 1.39883 1.84191 1.51977 1.05469 1.07887 0.91575 0.90595 0.91160 0.82935 0.89838 0.93766 0.88599 0.89725 0.93793 0.90839 0.92259 0.95055 0.93855 0.92731 0.79286 0.72156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 9.14 37.16 0.34 -0.95 16 2 C 0.16 1.37 3.08 -68.86 -0.21 1.15 16 3 H 0.10 0.87 7.79 -51.93 -0.40 0.47 16 4 N -0.68 -6.85 6.20 -107.94 -0.67 -7.52 16 5 C 0.07 0.93 4.77 -3.82 -0.02 0.91 16 6 C -0.14 -1.86 4.51 -27.88 -0.13 -1.99 16 7 C 0.50 10.08 7.67 -10.99 -0.08 9.99 16 8 O -0.55 -13.24 15.56 5.56 0.09 -13.15 16 9 N -0.60 -12.57 2.86 -182.96 -0.52 -13.09 16 10 C 0.08 1.28 10.24 59.85 0.61 1.90 16 11 C 0.24 6.38 5.16 -5.19 -0.03 6.35 16 12 C -0.53 -14.90 9.38 -34.44 -0.32 -15.23 16 13 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 16 Si 0.90 21.90 29.54 -169.99 -5.02 16.87 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.08 0.75 6.24 -13.30 -0.08 0.67 16 21 N -0.47 -4.58 10.45 -11.26 -0.12 -4.69 16 22 C 0.14 1.16 11.20 -18.48 -0.21 0.96 16 23 C -0.32 -2.91 6.51 -36.79 -0.24 -3.15 16 24 C 0.57 5.13 8.30 34.06 0.28 5.42 16 25 O -0.51 -6.09 17.75 -19.35 -0.34 -6.43 16 26 O -0.51 -2.85 13.23 -41.00 -0.54 -3.39 16 27 S 0.24 2.15 23.00 -107.50 -2.47 -0.33 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.57 7.45 -51.93 -0.39 0.18 16 30 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.35 3.25 8.47 -39.29 -0.33 2.92 16 32 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 33 H 0.04 0.57 7.39 -51.93 -0.38 0.18 16 34 H 0.10 1.25 7.40 -51.93 -0.38 0.86 16 35 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 38 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 39 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 40 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.19 1.13 8.06 -52.48 -0.42 0.71 16 43 H 0.42 0.47 9.11 45.56 0.42 0.88 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -36.32 387.23 -8.32 -44.64 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.11 Total: -0.52 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -0.18 Total: 7.64 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.57 Total: -51.17 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.80 Total: -22.97 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.47 Total: -0.33 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.32 -8.32 -44.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593256323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.630 kcal (2) G-P(sol) polarization free energy of solvation -36.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds