Wall clock time and date at job start Tue Mar 31 2020 22:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21593 * 119.99949 * 0.28071 * 5 4 2 7 7 N 1.34777 * 120.00128 * 180.27942 * 5 4 2 8 8 C 1.46499 * 120.00065 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.47198 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47200 * 300.00182 * 9 8 7 11 11 C 1.53005 * 109.46471 * 60.00209 * 9 8 7 12 12 C 1.50701 * 109.47211 * 179.97438 * 9 8 7 13 13 H 1.08002 * 119.99761 * 0.02562 * 12 9 8 14 14 C 1.37876 * 119.99724 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00074 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 119.99758 * 180.02562 * 14 12 9 17 17 H 1.48505 * 109.47234 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47290 * 120.00033 * 16 14 12 19 19 H 1.48495 * 109.47273 * 239.99836 * 16 14 12 20 20 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 21 21 N 1.29400 * 124.70568 * 284.69727 * 20 2 1 22 22 C 1.30908 * 117.46617 * 179.83525 * 21 20 2 23 23 C 1.36756 * 113.93462 * 0.44017 * 22 21 20 24 24 C 1.46502 * 126.18008 * 179.76885 * 23 22 21 25 25 O 1.21610 * 119.99814 * 180.02562 * 24 23 22 26 26 O 1.34876 * 119.99919 * 0.02562 * 24 23 22 27 27 S 1.70919 * 124.70738 * 104.99615 * 20 2 1 28 28 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 29 29 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 30 30 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 31 31 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 32 32 H 0.97000 * 119.99549 * 359.97438 * 7 5 4 33 33 H 1.09000 * 109.47602 * 299.99940 * 8 7 5 34 34 H 1.09006 * 109.46868 * 59.99976 * 8 7 5 35 35 H 1.09005 * 109.46870 * 59.99810 * 10 9 8 36 36 H 1.09004 * 109.46783 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.47156 * 299.99872 * 10 9 8 38 38 H 1.08995 * 109.47438 * 60.00401 * 11 9 8 39 39 H 1.09004 * 109.46658 * 180.02562 * 11 9 8 40 40 H 1.08996 * 109.47069 * 299.99541 * 11 9 8 41 41 H 0.96999 * 119.99800 * 180.02562 * 15 14 12 42 42 H 1.08002 * 123.03440 * 180.21566 * 22 21 20 43 43 H 0.96698 * 116.99914 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8631 1.1629 2.4103 7 7 2.6069 -0.6508 3.4548 8 6 2.7520 0.0814 4.7154 9 6 3.2812 -0.8636 5.7961 10 6 2.2982 -2.0201 5.9883 11 6 4.6420 -1.4167 5.3679 12 6 3.4312 -0.1103 7.0926 13 1 3.1742 0.9376 7.1411 14 6 3.8963 -0.7588 8.2169 15 7 4.2096 -2.0347 8.1577 16 14 4.0814 0.1748 9.8242 17 1 3.6646 1.5865 9.6275 18 1 3.2259 -0.4533 10.8629 19 1 5.5003 0.1332 10.2602 20 6 2.0323 -0.7104 -1.2305 21 7 2.0235 -1.9938 -1.3955 22 6 2.4928 -2.4606 -2.5249 23 6 2.9431 -1.4935 -3.3806 24 6 3.5232 -1.7147 -4.7075 25 8 3.8889 -0.7676 -5.3768 26 8 3.6515 -2.9689 -5.1868 27 16 2.6995 0.0669 -2.5987 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.2491 -1.6318 1.1526 32 1 2.8372 -1.5921 3.4113 33 1 3.4521 0.9056 4.5784 34 1 1.7825 0.4751 5.0205 35 1 2.1902 -2.5649 5.0503 36 1 2.6755 -2.6935 6.7579 37 1 1.3287 -1.6260 6.2932 38 1 5.3424 -0.5928 5.2310 39 1 5.0189 -2.0903 6.1376 40 1 4.5340 -1.9615 4.4300 41 1 4.5365 -2.4910 8.9487 42 1 2.5250 -3.5146 -2.7583 43 1 4.0403 -3.0648 -6.0670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609765991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:11 Heat of formation + Delta-G solvation = -78.613950 kcal Electronic energy + Delta-G solvation = -26662.098996 eV Core-core repulsion = 22641.388552 eV Total energy + Delta-G solvation = -4020.710444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83971 -40.19667 -39.47226 -36.73113 -36.57944 -35.41754 -33.33065 -31.74276 -30.79003 -29.90261 -26.77582 -25.71451 -25.58632 -24.85366 -23.73692 -22.87800 -21.03056 -20.08318 -19.04966 -18.78550 -18.44965 -17.68277 -17.28964 -16.31085 -15.92642 -15.79795 -15.33505 -15.05485 -14.78574 -14.66990 -14.38105 -14.07905 -13.87433 -13.48033 -13.30126 -12.87669 -12.64321 -12.35007 -12.17145 -12.12806 -12.09643 -11.67355 -11.47695 -11.37501 -11.19953 -10.87660 -10.65488 -10.38306 -10.24245 -10.20431 -10.08545 -9.85694 -9.62646 -9.51420 -9.30818 -9.13598 -8.77642 -8.42327 -8.23913 -6.01724 -4.11531 -0.45062 0.46714 1.07180 1.71819 2.44471 2.61141 3.02363 3.27588 3.36335 3.40589 3.41378 3.59526 4.30524 4.38886 4.44546 4.67468 4.84352 4.91230 4.96034 5.25219 5.36689 5.53014 5.64886 5.87370 6.01780 6.19770 6.36185 6.44631 6.51856 6.79123 6.84074 6.89991 7.03741 7.04443 7.07270 7.26952 7.30209 7.40007 7.56811 7.70652 8.01930 8.13092 8.37373 8.43120 8.88044 8.96554 9.54261 10.99728 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023685 B = 0.002027 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.905833 B =13808.983722 C =14260.371274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.240 3.760 3 H 0.111 0.889 4 N -0.742 5.742 5 C 0.701 3.299 6 O -0.598 6.598 7 N -0.729 5.729 8 C 0.150 3.850 9 C 0.055 3.945 10 C -0.130 4.130 11 C -0.130 4.130 12 C -0.504 4.504 13 H 0.058 0.942 14 C 0.065 3.935 15 N -0.886 5.886 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.047 3.953 21 N -0.473 5.473 22 C 0.137 3.863 23 C -0.316 4.316 24 C 0.570 3.430 25 O -0.512 6.512 26 O -0.505 6.505 27 S 0.272 5.728 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.403 0.597 32 H 0.395 0.605 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.006 0.994 36 H 0.085 0.915 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.085 0.915 40 H 0.005 0.995 41 H 0.259 0.741 42 H 0.194 0.806 43 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 -3.035 -24.780 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.130 3.870 3 H 0.129 0.871 4 N -0.401 5.401 5 C 0.401 3.599 6 O -0.477 6.477 7 N -0.383 5.383 8 C 0.027 3.973 9 C 0.054 3.946 10 C -0.188 4.188 11 C -0.188 4.188 12 C -0.542 4.542 13 H 0.077 0.923 14 C -0.136 4.136 15 N -0.525 5.525 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.226 4.226 21 N -0.187 5.187 22 C -0.024 4.024 23 C -0.439 4.439 24 C 0.412 3.588 25 O -0.401 6.401 26 O -0.317 6.317 27 S 0.532 5.468 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.238 0.762 32 H 0.230 0.770 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.025 0.975 36 H 0.103 0.897 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.104 0.896 40 H 0.024 0.976 41 H 0.069 0.931 42 H 0.211 0.789 43 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -4.121 -0.959 -24.162 24.530 hybrid contribution 0.676 -1.604 -0.041 1.742 sum -3.444 -2.564 -24.203 24.581 Atomic orbital electron populations 1.22224 0.92635 1.03453 1.03456 1.19246 0.94849 0.95133 0.77742 0.87120 1.45057 1.72925 1.13979 1.08109 1.16005 0.78617 0.85082 0.80222 1.90890 1.57845 1.14366 1.84597 1.45509 1.68915 1.14151 1.09757 1.21618 1.00109 0.94946 0.80592 1.18378 0.92150 0.92171 0.91853 1.21820 0.98177 0.99745 0.99026 1.21825 0.98671 1.00106 0.98195 1.21017 1.43548 0.96264 0.93391 0.92335 1.24886 0.95067 0.94896 0.98761 1.69815 1.44721 1.08928 1.28998 0.86516 0.77631 0.80188 0.83549 1.19741 1.21098 1.21102 1.27967 0.99646 0.93327 1.01699 1.66089 1.18816 1.11861 1.21934 1.22744 0.92014 1.01401 0.86261 1.24986 1.19343 0.98728 1.00813 1.18969 0.74754 0.80766 0.84317 1.90986 1.47109 1.42974 1.59064 1.84552 1.77230 1.29959 1.39969 1.84238 1.50596 1.04833 1.07166 0.90021 0.91538 0.91358 0.76234 0.77035 0.92855 0.92817 0.97510 0.89668 0.95422 0.95451 0.89638 0.97560 0.93088 0.78949 0.72028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.47 37.16 0.35 -1.18 16 2 C 0.24 2.60 3.07 -69.08 -0.21 2.39 16 3 H 0.11 1.25 7.57 -51.93 -0.39 0.85 16 4 N -0.74 -9.49 5.07 -59.81 -0.30 -9.80 16 5 C 0.70 11.85 8.53 -86.92 -0.74 11.11 16 6 O -0.60 -12.06 16.00 5.28 0.08 -11.98 16 7 N -0.73 -12.77 4.96 -65.22 -0.32 -13.09 16 8 C 0.15 3.15 4.50 -4.04 -0.02 3.13 16 9 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 10 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 11 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 12 C -0.50 -13.06 8.01 -34.44 -0.28 -13.34 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 15 N -0.89 -23.47 9.35 55.43 0.52 -22.95 16 16 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.05 0.45 6.21 -13.30 -0.08 0.37 16 21 N -0.47 -4.55 10.10 -11.26 -0.11 -4.66 16 22 C 0.14 1.11 11.20 -18.48 -0.21 0.91 16 23 C -0.32 -2.75 6.51 -36.79 -0.24 -2.99 16 24 C 0.57 4.91 8.30 34.06 0.28 5.19 16 25 O -0.51 -5.84 17.75 -19.35 -0.34 -6.19 16 26 O -0.50 -2.70 13.23 -40.97 -0.54 -3.24 16 27 S 0.27 2.33 23.00 -107.50 -2.47 -0.15 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.40 4.63 8.29 -40.82 -0.34 4.29 16 32 H 0.39 6.29 6.18 -40.82 -0.25 6.04 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 36 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 40 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 41 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 42 H 0.19 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.42 0.36 9.11 45.56 0.42 0.78 16 LS Contribution 376.06 15.07 5.67 5.67 Total: -1.00 -31.61 376.06 -8.40 -40.01 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.83 Total: 7.62 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -0.71 Total: 3.17 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.22 Total: -50.50 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.80 Total: -21.41 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.47 Total: -0.15 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.61 -8.40 -40.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609765991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.609 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds