Wall clock time and date at job start Tue Mar 31 2020 23:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34600 * 119.47662 * 2 1 4 4 C 1.37997 * 120.45506 * 180.28331 * 3 2 1 5 5 C 1.47453 * 120.25671 * 179.71397 * 4 3 2 6 6 O 1.21606 * 119.99977 * 359.44607 * 5 4 3 7 7 N 1.34777 * 120.00129 * 179.73112 * 5 4 3 8 8 N 1.40100 * 119.99982 * 180.02562 * 7 5 4 9 9 C 1.34774 * 120.00021 * 179.97438 * 8 7 5 10 10 O 1.21551 * 120.00102 * 359.97438 * 9 8 7 11 11 C 1.47890 * 120.00298 * 179.97438 * 9 8 7 12 12 C 1.39915 * 120.01980 * 359.73060 * 11 9 8 13 13 C 1.38337 * 120.35407 * 179.71661 * 12 11 9 14 14 C 1.37751 * 120.40849 * 0.55277 * 13 12 11 15 15 C 1.40752 * 120.04334 * 359.72503 * 14 13 12 16 16 C 1.41438 * 120.17667 * 180.02562 * 15 14 13 17 17 H 1.07994 * 119.99934 * 150.18132 * 16 15 14 18 18 C 1.39941 * 119.99991 * 330.17441 * 16 15 14 19 19 N 1.30823 * 119.99991 * 161.73395 * 18 16 15 20 20 Si 1.86797 * 119.99969 * 341.73404 * 18 16 15 21 21 H 1.48504 * 109.47138 * 95.41249 * 20 18 16 22 22 H 1.48504 * 109.47230 * 215.41397 * 20 18 16 23 23 H 1.48502 * 109.47537 * 335.41064 * 20 18 16 24 24 C 1.38996 * 120.02262 * 179.97438 * 11 9 8 25 25 C 1.41596 * 119.48408 * 359.44222 * 4 3 2 26 26 C 1.35972 * 119.01135 * 0.27337 * 25 4 3 27 27 C 1.34540 * 119.47652 * 179.72122 * 2 1 3 28 28 O 1.21956 * 119.74793 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.47075 * 180.28230 * 1 2 3 30 30 H 1.09002 * 109.47008 * 300.27813 * 1 2 3 31 31 H 1.09004 * 109.47293 * 60.28195 * 1 2 3 32 32 H 1.07998 * 119.76971 * 359.97438 * 3 2 1 33 33 H 0.97000 * 120.00048 * 359.97438 * 7 5 4 34 34 H 0.96993 * 120.00327 * 359.97438 * 8 7 5 35 35 H 1.07998 * 119.82572 * 359.96860 * 12 11 9 36 36 H 1.07995 * 119.79252 * 180.25830 * 13 12 11 37 37 H 1.08010 * 119.97951 * 179.74608 * 14 13 12 38 38 H 0.97000 * 120.00210 * 180.02562 * 19 18 16 39 39 H 1.07994 * 120.21002 * 359.97438 * 24 11 9 40 40 H 1.08004 * 120.49227 * 180.29917 * 25 4 3 41 41 H 1.07996 * 120.24705 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1273 1.1718 0.0000 4 6 3.5071 1.1953 -0.0059 5 6 4.2282 2.4815 -0.0122 6 8 3.6069 3.5268 -0.0224 7 7 5.5758 2.4985 -0.0125 8 7 6.2610 3.7206 -0.0179 9 6 7.6086 3.7376 -0.0177 10 8 8.2296 2.6928 -0.0122 11 6 8.3319 5.0276 -0.0240 12 6 7.6175 6.2306 -0.0360 13 6 8.2870 7.4412 -0.0361 14 6 9.6640 7.4764 -0.0359 15 6 10.3996 6.2765 -0.0297 16 6 11.8136 6.3094 -0.0289 17 1 12.3720 5.5129 0.4403 18 6 12.4891 7.3739 -0.6362 19 7 13.7427 7.6059 -0.3426 20 14 11.6008 8.4636 -1.8662 21 1 11.0766 9.6676 -1.1727 22 1 12.5467 8.8792 -2.9329 23 1 10.4729 7.7103 -2.4709 24 6 9.7217 5.0457 -0.0232 25 6 4.2250 -0.0251 0.0001 26 6 3.5344 -1.1964 0.0058 27 6 2.1270 -1.1712 0.0057 28 8 1.5030 -2.2190 0.0103 29 1 -0.3633 -1.0276 0.0051 30 1 -0.3633 0.5182 0.8875 31 1 -0.3634 0.5095 -0.8925 32 1 1.5751 2.0999 -0.0004 33 1 6.0714 1.6647 -0.0081 34 1 5.7655 4.5544 -0.0219 35 1 6.5377 6.2140 -0.0411 36 1 7.7265 8.3643 -0.0412 37 1 10.1796 8.4255 -0.0401 38 1 14.2108 8.3440 -0.7633 39 1 10.2772 4.1195 -0.0175 40 1 5.3050 -0.0257 0.0005 41 1 4.0617 -2.1388 0.0108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001618153188.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:08 Heat of formation + Delta-G solvation = -10.939487 kcal Electronic energy + Delta-G solvation = -27367.921746 eV Core-core repulsion = 23214.701935 eV Total energy + Delta-G solvation = -4153.219811 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.01987 -40.37552 -39.12752 -37.51173 -37.24815 -35.45931 -35.17110 -33.81115 -31.95864 -30.73984 -30.27677 -29.76968 -28.22672 -25.42746 -24.89500 -23.69918 -23.27322 -21.68117 -20.81066 -20.69100 -18.87666 -18.20472 -17.84145 -17.32975 -17.05134 -16.69680 -16.43124 -16.07137 -15.52746 -15.47034 -14.86632 -14.77538 -14.74912 -14.35983 -14.08487 -13.86737 -13.76149 -13.66310 -13.11695 -12.91627 -12.83269 -12.58032 -12.23136 -12.12849 -11.75461 -11.34019 -11.15833 -10.88667 -10.74268 -10.65450 -10.63527 -10.49280 -10.12469 -9.86815 -9.68456 -9.29657 -8.68188 -8.36150 -7.96831 -7.86079 -7.08191 -4.63849 0.22585 0.80570 1.64227 1.70225 2.09279 2.42337 2.52037 3.00329 3.12510 3.17905 3.21730 3.42751 3.81341 3.86543 4.00320 4.17500 4.27262 4.37402 4.42856 4.53001 4.62278 4.74935 5.05462 5.17061 5.23212 5.37217 5.40080 5.55458 5.76150 5.81686 5.92046 6.26214 6.36131 6.50892 6.55540 6.60411 6.66894 6.87935 7.09523 7.27155 7.38486 7.39165 7.56190 7.65832 7.76965 7.84405 8.19545 8.42270 8.46524 8.62396 9.93537 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.031796 B = 0.001923 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.413043 B =14559.276106 C =15192.406122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.491 5.491 3 C 0.217 3.783 4 C -0.243 4.243 5 C 0.577 3.423 6 O -0.547 6.547 7 N -0.514 5.514 8 N -0.524 5.524 9 C 0.569 3.431 10 O -0.546 6.546 11 C -0.101 4.101 12 C -0.217 4.217 13 C -0.080 4.080 14 C -0.218 4.218 15 C 0.081 3.919 16 C -0.440 4.440 17 H 0.095 0.905 18 C 0.083 3.917 19 N -0.800 5.800 20 Si 0.911 3.089 21 H -0.269 1.269 22 H -0.288 1.288 23 H -0.243 1.243 24 C -0.130 4.130 25 C 0.000 4.000 26 C -0.237 4.237 27 C 0.515 3.485 28 O -0.540 6.540 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.183 0.817 33 H 0.430 0.570 34 H 0.434 0.566 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.288 0.712 39 H 0.118 0.882 40 H 0.142 0.858 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.703 -9.074 -0.443 23.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.199 5.199 3 C 0.083 3.917 4 C -0.253 4.253 5 C 0.364 3.636 6 O -0.426 6.426 7 N -0.260 5.260 8 N -0.276 5.276 9 C 0.360 3.640 10 O -0.423 6.423 11 C -0.106 4.106 12 C -0.238 4.238 13 C -0.098 4.098 14 C -0.238 4.238 15 C 0.078 3.922 16 C -0.468 4.468 17 H 0.113 0.887 18 C -0.137 4.137 19 N -0.423 5.423 20 Si 0.737 3.263 21 H -0.195 1.195 22 H -0.216 1.216 23 H -0.166 1.166 24 C -0.151 4.151 25 C -0.021 4.021 26 C -0.259 4.259 27 C 0.317 3.683 28 O -0.421 6.421 29 H 0.126 0.874 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.200 0.800 33 H 0.273 0.727 34 H 0.278 0.722 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.098 0.902 39 H 0.136 0.864 40 H 0.159 0.841 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.854 -9.713 -0.451 23.920 hybrid contribution -0.092 0.699 -0.482 0.854 sum -21.946 -9.014 -0.933 23.743 Atomic orbital electron populations 1.22385 0.76180 1.06875 1.04030 1.45214 1.10098 1.06746 1.57839 1.22216 0.92671 0.90222 0.86562 1.19019 0.92411 0.93263 1.20636 1.17557 0.80221 0.88712 0.77083 1.90822 1.66802 1.33064 1.51865 1.44514 1.04283 1.01997 1.75228 1.45110 1.04862 0.99736 1.77850 1.19066 0.79068 0.90915 0.74985 1.90721 1.66820 1.33929 1.50820 1.19087 0.94029 0.89527 1.07916 1.20415 0.97066 0.91926 1.14348 1.20521 0.94278 0.96252 0.98736 1.21218 0.93656 0.97628 1.11295 1.17682 0.93783 0.90567 0.90163 1.19529 0.89851 1.06582 1.30789 0.88719 1.26188 0.94903 0.96207 0.96427 1.69682 1.11121 1.26371 1.35110 0.86310 0.80020 0.80093 0.79912 1.19455 1.21559 1.16611 1.21244 0.91131 0.98033 1.04680 1.21538 1.00839 0.90973 0.88764 1.22016 0.92171 1.00272 1.11429 1.17328 0.89584 0.82656 0.78712 1.90947 1.69444 1.29903 1.51821 0.87386 0.89539 0.89532 0.80020 0.72737 0.72211 0.88377 0.87985 0.87713 0.90188 0.86397 0.84060 0.82440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.18 10.55 59.85 0.63 0.81 16 2 N -0.49 -3.40 2.95 -126.73 -0.37 -3.77 16 3 C 0.22 1.42 9.92 -16.43 -0.16 1.25 16 4 C -0.24 -1.99 5.88 -104.95 -0.62 -2.61 16 5 C 0.58 6.38 7.88 -12.51 -0.10 6.28 16 6 O -0.55 -7.35 16.16 5.27 0.09 -7.26 16 7 N -0.51 -6.22 6.21 30.44 0.19 -6.04 16 8 N -0.52 -7.71 6.21 30.54 0.19 -7.52 16 9 C 0.57 10.27 7.89 -12.31 -0.10 10.17 16 10 O -0.55 -10.90 16.17 5.32 0.09 -10.82 16 11 C -0.10 -2.02 5.87 -105.04 -0.62 -2.63 16 12 C -0.22 -3.99 9.55 -38.92 -0.37 -4.37 16 13 C -0.08 -1.55 10.01 -39.72 -0.40 -1.94 16 14 C -0.22 -4.85 7.17 -38.81 -0.28 -5.13 16 15 C 0.08 1.94 5.10 -106.87 -0.55 1.40 16 16 C -0.44 -11.32 9.57 -37.73 -0.36 -11.68 16 17 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 18 C 0.08 2.06 5.40 -17.34 -0.09 1.97 16 19 N -0.80 -20.36 13.93 55.55 0.77 -19.59 16 20 Si 0.91 19.58 24.52 -169.99 -4.17 15.41 16 21 H -0.27 -5.54 6.71 56.52 0.38 -5.16 16 22 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.24 -5.34 6.86 56.52 0.39 -4.95 16 24 C -0.13 -2.94 9.34 -38.44 -0.36 -3.30 16 25 C 0.00 0.00 9.57 -39.11 -0.37 -0.37 16 26 C -0.24 -1.93 9.97 -39.44 -0.39 -2.32 16 27 C 0.51 5.00 7.40 -15.41 -0.11 4.88 16 28 O -0.54 -6.96 16.33 4.96 0.08 -6.88 16 29 H 0.11 0.58 6.83 -51.93 -0.35 0.22 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.18 0.83 7.59 -52.49 -0.40 0.43 16 33 H 0.43 4.59 6.06 -182.60 -1.11 3.49 16 34 H 0.43 6.03 6.02 -182.60 -1.10 4.93 16 35 H 0.10 1.48 6.38 -52.49 -0.33 1.15 16 36 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.11 2.31 4.72 -52.48 -0.25 2.06 16 38 H 0.29 6.60 8.30 -40.82 -0.34 6.26 16 39 H 0.12 2.68 7.64 -52.49 -0.40 2.28 16 40 H 0.14 0.78 6.48 -52.48 -0.34 0.44 16 41 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 354.67 15.07 5.34 5.34 Total: -1.00 -31.99 354.67 -7.61 -39.60 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.57 Total: 9.11 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -4.25 Total: -7.57 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.78 Total: -36.92 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: 0.25 Total: -24.96 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.17 Total: 15.41 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.99 -7.61 -39.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618153188.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.658 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds