Wall clock time and date at job start Tue Mar 31 2020 23:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34602 * 119.48037 * 2 1 4 4 C 1.37996 * 120.45940 * 180.28745 * 3 2 1 5 5 C 1.47456 * 120.25516 * 179.73920 * 4 3 2 6 6 O 1.21604 * 120.00372 * 359.72149 * 5 4 3 7 7 N 1.34779 * 119.99601 * 179.72030 * 5 4 3 8 8 N 1.40104 * 119.99760 * 180.27866 * 7 5 4 9 9 C 1.34774 * 119.99853 * 179.72785 * 8 7 5 10 10 O 1.21582 * 119.99988 * 359.97438 * 9 8 7 11 11 C 1.47642 * 119.99807 * 179.97438 * 9 8 7 12 12 C 1.40011 * 119.89831 * 359.72820 * 11 9 8 13 13 C 1.36321 * 120.11153 * 179.76126 * 12 11 9 14 14 C 1.40889 * 119.88468 * 0.50499 * 13 12 11 15 15 C 1.41110 * 120.09941 * 179.72261 * 14 13 12 16 16 H 1.07992 * 120.00224 * 155.08717 * 15 14 13 17 17 C 1.40235 * 120.00135 * 335.08226 * 15 14 13 18 18 N 1.30644 * 119.99603 * 342.21060 * 17 15 14 19 19 Si 1.86799 * 120.00074 * 162.20578 * 17 15 14 20 20 H 1.48494 * 109.47064 * 94.66576 * 19 17 15 21 21 H 1.48498 * 109.47135 * 214.66418 * 19 17 15 22 22 H 1.48497 * 109.47135 * 334.66643 * 19 17 15 23 23 C 1.40884 * 119.79588 * 359.74815 * 14 13 12 24 24 C 1.36319 * 119.89278 * 359.97438 * 23 14 13 25 25 C 1.41587 * 119.48310 * 359.46193 * 4 3 2 26 26 C 1.35975 * 119.01388 * 0.25509 * 25 4 3 27 27 C 1.34533 * 119.47946 * 179.72515 * 2 1 3 28 28 O 1.21968 * 119.74815 * 359.97438 * 27 2 1 29 29 H 1.08997 * 109.47245 * 180.28149 * 1 2 3 30 30 H 1.09004 * 109.46562 * 300.27589 * 1 2 3 31 31 H 1.08999 * 109.47264 * 60.27541 * 1 2 3 32 32 H 1.08003 * 119.76682 * 0.02562 * 3 2 1 33 33 H 0.96992 * 120.00394 * 0.02562 * 7 5 4 34 34 H 0.97001 * 119.99803 * 359.72312 * 8 7 5 35 35 H 1.08005 * 119.94359 * 0.02562 * 12 11 9 36 36 H 1.07997 * 120.05782 * 180.22996 * 13 12 11 37 37 H 0.97004 * 119.99634 * 179.97438 * 18 17 15 38 38 H 1.08002 * 120.04989 * 179.97438 * 23 14 13 39 39 H 1.07995 * 119.94293 * 179.97438 * 24 23 14 40 40 H 1.08000 * 120.49329 * 180.27558 * 25 4 3 41 41 H 1.08003 * 120.25058 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1274 1.1717 0.0000 4 6 3.5071 1.1953 -0.0060 5 6 4.2282 2.4815 -0.0117 6 8 3.6070 3.5269 -0.0164 7 7 5.5759 2.4985 -0.0119 8 7 6.2610 3.7206 -0.0114 9 6 7.6087 3.7376 -0.0060 10 8 8.2298 2.6924 -0.0010 11 6 8.3307 5.0254 -0.0061 12 6 7.6133 6.2277 -0.0177 13 6 8.2754 7.4193 -0.0129 14 6 9.6841 7.4395 -0.0072 15 6 10.3742 8.6704 -0.0081 16 1 11.3765 8.7279 0.3898 17 6 9.7585 9.8190 -0.5260 18 7 8.7186 9.7062 -1.3087 19 14 10.4252 11.5103 -0.0964 20 1 11.3628 11.9570 -1.1578 21 1 9.3002 12.4740 0.0078 22 1 11.1425 11.4445 1.2021 23 6 10.4017 6.2271 -0.0010 24 6 9.7307 5.0405 0.0000 25 6 4.2250 -0.0251 -0.0005 26 6 3.5344 -1.1964 0.0052 27 6 2.1270 -1.1711 0.0056 28 8 1.5030 -2.2191 0.0111 29 1 -0.3633 -1.0276 0.0050 30 1 -0.3632 0.5181 0.8876 31 1 -0.3634 0.5095 -0.8924 32 1 1.5751 2.0999 0.0004 33 1 6.0714 1.6647 -0.0085 34 1 5.7654 4.5544 -0.0151 35 1 6.5334 6.2111 -0.0260 36 1 7.7211 8.3462 -0.0181 37 1 8.2925 10.5008 -1.6666 38 1 11.4816 6.2379 0.0031 39 1 10.2799 4.1107 0.0043 40 1 5.3050 -0.0256 -0.0006 41 1 4.0618 -2.1389 0.0098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001618153253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:11 Heat of formation + Delta-G solvation = -16.933702 kcal Electronic energy + Delta-G solvation = -27286.555647 eV Core-core repulsion = 23133.075907 eV Total energy + Delta-G solvation = -4153.479739 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.93332 -40.12728 -38.82874 -37.34276 -37.10231 -35.31183 -34.95908 -33.99021 -31.69765 -30.52599 -29.69565 -29.51834 -28.16057 -26.03899 -24.69981 -23.59481 -22.35828 -21.55360 -20.97350 -20.32988 -18.54876 -18.00672 -17.63451 -17.43835 -17.03954 -16.61792 -16.45920 -15.76889 -15.51419 -15.31170 -14.82719 -14.68567 -14.10321 -14.08872 -14.04841 -13.79790 -13.58120 -13.32833 -13.04314 -12.88786 -12.49539 -12.20728 -12.12391 -12.06412 -11.53790 -11.33683 -11.17432 -10.99940 -10.72548 -10.66139 -10.52125 -10.36328 -10.18207 -9.66330 -9.44884 -9.31764 -8.56246 -8.13795 -7.81839 -7.63804 -7.13087 -4.70168 0.30956 0.90290 1.83626 2.05507 2.23782 2.64001 2.84847 2.90307 2.95138 2.96165 3.30759 3.66289 3.71413 3.97259 4.09688 4.27689 4.36563 4.44506 4.60471 4.66423 4.68852 4.83837 5.11866 5.44962 5.46339 5.46790 5.63139 5.72608 5.89524 5.95570 6.20479 6.44177 6.68110 6.72579 6.80586 6.87703 6.94957 7.03089 7.33586 7.46456 7.53961 7.65088 7.76274 7.95597 7.97975 8.00301 8.29937 8.52886 8.64427 8.84588 9.78538 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.026928 B = 0.001878 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.564075 B =14906.874434 C =15861.334836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.491 5.491 3 C 0.215 3.785 4 C -0.241 4.241 5 C 0.573 3.427 6 O -0.549 6.549 7 N -0.512 5.512 8 N -0.533 5.533 9 C 0.576 3.424 10 O -0.576 6.576 11 C -0.282 4.282 12 C -0.061 4.061 13 C -0.176 4.176 14 C 0.129 3.871 15 C -0.436 4.436 16 H 0.087 0.913 17 C 0.073 3.927 18 N -0.766 5.766 19 Si 0.914 3.086 20 H -0.267 1.267 21 H -0.272 1.272 22 H -0.256 1.256 23 C -0.238 4.238 24 C -0.015 4.015 25 C 0.001 3.999 26 C -0.239 4.239 27 C 0.515 3.485 28 O -0.542 6.542 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.183 0.817 33 H 0.428 0.572 34 H 0.430 0.570 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.289 0.711 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.141 0.859 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.083 -10.437 1.650 16.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.199 5.199 3 C 0.081 3.919 4 C -0.251 4.251 5 C 0.360 3.640 6 O -0.428 6.428 7 N -0.257 5.257 8 N -0.284 5.284 9 C 0.372 3.628 10 O -0.457 6.457 11 C -0.288 4.288 12 C -0.081 4.081 13 C -0.195 4.195 14 C 0.126 3.874 15 C -0.463 4.463 16 H 0.105 0.895 17 C -0.149 4.149 18 N -0.388 5.388 19 Si 0.738 3.262 20 H -0.192 1.192 21 H -0.196 1.196 22 H -0.180 1.180 23 C -0.257 4.257 24 C -0.035 4.035 25 C -0.020 4.020 26 C -0.261 4.261 27 C 0.317 3.683 28 O -0.424 6.424 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.200 0.800 33 H 0.270 0.730 34 H 0.274 0.726 35 H 0.109 0.891 36 H 0.139 0.861 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.159 0.841 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.705 -11.016 1.493 17.647 hybrid contribution 0.258 0.879 0.005 0.916 sum -13.447 -10.138 1.498 16.907 Atomic orbital electron populations 1.22374 0.76245 1.06804 1.04010 1.45196 1.10056 1.06749 1.57901 1.22221 0.92714 0.90181 0.86765 1.19073 0.92417 0.93406 1.20198 1.17539 0.80394 0.88617 0.77456 1.90820 1.66830 1.33038 1.52066 1.44466 1.04172 1.02368 1.74732 1.45188 1.04982 0.99127 1.79135 1.18871 0.78576 0.90810 0.74557 1.90648 1.66850 1.34335 1.53827 1.18534 0.93463 0.89246 1.27545 1.20496 0.96865 0.92702 0.97993 1.20978 0.94562 0.96546 1.07430 1.17820 0.92144 0.92330 0.85127 1.19906 1.01651 0.92238 1.32476 0.89500 1.26147 0.94018 1.02292 0.92468 1.69737 1.16667 1.32973 1.19471 0.86179 0.79649 0.79931 0.80485 1.19157 1.19648 1.18002 1.20706 0.98180 0.92122 1.14712 1.20317 0.92132 0.97152 0.93894 1.21547 1.00848 0.90991 0.88632 1.22003 0.92179 1.00217 1.11659 1.17321 0.89579 0.82654 0.78728 1.90943 1.69469 1.29916 1.52047 0.87428 0.89577 0.89561 0.80029 0.72980 0.72589 0.89123 0.86055 0.90018 0.88135 0.87872 0.84083 0.82516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.22 10.55 59.85 0.63 0.85 16 2 N -0.49 -3.84 2.95 -126.73 -0.37 -4.21 16 3 C 0.21 1.64 9.92 -16.43 -0.16 1.48 16 4 C -0.24 -2.27 5.88 -104.96 -0.62 -2.88 16 5 C 0.57 7.25 7.88 -12.50 -0.10 7.16 16 6 O -0.55 -8.36 16.16 5.27 0.09 -8.27 16 7 N -0.51 -7.09 6.21 30.44 0.19 -6.90 16 8 N -0.53 -8.99 6.21 30.48 0.19 -8.80 16 9 C 0.58 11.47 7.88 -12.42 -0.10 11.37 16 10 O -0.58 -12.35 16.16 5.29 0.09 -12.26 16 11 C -0.28 -6.09 5.89 -104.73 -0.62 -6.71 16 12 C -0.06 -1.31 9.47 -39.61 -0.38 -1.68 16 13 C -0.18 -4.15 8.63 -39.27 -0.34 -4.48 16 14 C 0.13 3.15 5.57 -106.80 -0.60 2.55 16 15 C -0.44 -10.37 9.04 -37.74 -0.34 -10.71 16 16 H 0.09 1.96 7.91 -52.49 -0.42 1.55 16 17 C 0.07 1.64 5.13 -17.31 -0.09 1.55 16 18 N -0.77 -17.71 10.97 55.56 0.61 -17.11 16 19 Si 0.91 16.61 29.60 -169.99 -5.03 11.58 16 20 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 21 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 22 H -0.26 -4.65 7.11 56.52 0.40 -4.24 16 23 C -0.24 -5.45 9.73 -39.27 -0.38 -5.83 16 24 C -0.02 -0.34 9.52 -39.61 -0.38 -0.72 16 25 C 0.00 0.01 9.57 -39.12 -0.37 -0.36 16 26 C -0.24 -2.13 9.97 -39.44 -0.39 -2.52 16 27 C 0.51 5.40 7.40 -15.42 -0.11 5.28 16 28 O -0.54 -7.35 16.33 4.95 0.08 -7.27 16 29 H 0.11 0.65 6.83 -51.93 -0.35 0.30 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.18 1.05 7.59 -52.48 -0.40 0.65 16 33 H 0.43 5.25 6.06 -182.60 -1.11 4.15 16 34 H 0.43 7.09 6.00 -182.59 -1.10 5.99 16 35 H 0.09 1.68 6.37 -52.48 -0.33 1.34 16 36 H 0.12 2.91 6.17 -52.49 -0.32 2.58 16 37 H 0.29 5.99 8.29 -40.82 -0.34 5.65 16 38 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.10 2.18 7.63 -52.49 -0.40 1.78 16 40 H 0.14 0.93 6.48 -52.49 -0.34 0.59 16 41 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 359.68 15.07 5.42 5.42 Total: -1.00 -31.18 359.68 -8.68 -39.86 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -5.60 Total: 13.63 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -4.34 Total: -5.67 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.61 Total: -37.02 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: 0.25 Total: -27.80 kcal Atomic # 14 Polarization: 16.61 SS G_CDS: -5.03 Total: 11.58 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.18 -8.68 -39.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618153253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.928 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds