Wall clock time and date at job start Tue Mar 31 2020 23:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34223 * 117.00359 * 2 1 4 4 O 1.20833 * 119.99722 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00380 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46919 * 59.99827 * 5 3 2 7 7 C 1.53004 * 109.47034 * 299.99993 * 5 3 2 8 8 C 1.50699 * 109.47303 * 180.02562 * 5 3 2 9 9 C 1.33415 * 122.71844 * 44.99783 * 8 5 3 10 10 S 1.76165 * 108.07013 * 179.97438 * 9 8 5 11 11 C 1.70965 * 90.34574 * 0.02562 * 10 9 8 12 12 N 1.39000 * 124.94865 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99677 * 0.02562 * 12 11 10 14 14 O 1.21577 * 119.99987 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99632 * 179.97438 * 13 12 11 16 16 C 1.46506 * 119.99693 * 179.97438 * 15 13 12 17 17 H 1.08996 * 109.46660 * 35.00912 * 16 15 13 18 18 C 1.52997 * 109.47289 * 275.00198 * 16 15 13 19 19 C 1.50708 * 109.46796 * 155.00272 * 16 15 13 20 20 H 1.07995 * 119.99755 * 0.02562 * 19 16 15 21 21 C 1.37873 * 119.99729 * 180.02562 * 19 16 15 22 22 N 1.31516 * 119.99909 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99980 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46950 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47111 * 120.00368 * 23 21 19 26 26 H 1.48500 * 109.47074 * 240.00161 * 23 21 19 27 27 N 1.29629 * 110.10881 * 0.26312 * 11 10 9 28 28 H 1.08999 * 109.47523 * 300.00297 * 1 2 3 29 29 H 1.09007 * 109.47405 * 59.99992 * 1 2 3 30 30 H 1.09004 * 109.47270 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46974 * 179.97438 * 6 5 3 32 32 H 1.08990 * 109.47507 * 300.00025 * 6 5 3 33 33 H 1.09005 * 109.47004 * 60.00608 * 6 5 3 34 34 H 1.09005 * 109.46729 * 299.99834 * 7 5 3 35 35 H 1.09001 * 109.46971 * 59.99711 * 7 5 3 36 36 H 1.08998 * 109.46946 * 180.02562 * 7 5 3 37 37 H 1.08001 * 125.95950 * 0.02562 * 9 8 5 38 38 H 0.96995 * 120.00659 * 180.02562 * 12 11 10 39 39 H 0.97000 * 120.00190 * 0.02562 * 15 13 12 40 40 H 1.09002 * 109.47153 * 179.97438 * 18 16 15 41 41 H 1.09001 * 109.46832 * 60.00146 * 18 16 15 42 42 H 1.09004 * 109.47261 * 300.00128 * 18 16 15 43 43 H 0.97002 * 119.99804 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1138 0.5809 -1.2483 7 6 4.1128 0.5814 1.2502 8 6 3.9936 2.7199 0.0011 9 6 3.4366 3.6363 0.7948 10 16 4.2227 5.1813 0.4810 11 6 5.2264 4.4445 -0.6906 12 7 6.1985 5.1035 -1.4341 13 6 6.4046 6.4233 -1.2547 14 8 5.7406 7.0373 -0.4422 15 7 7.3476 7.0621 -1.9752 16 6 7.5712 8.4969 -1.7806 17 1 7.4202 8.7490 -0.7310 18 6 6.5853 9.2883 -2.6423 19 6 8.9814 8.8445 -2.1828 20 1 9.6445 8.0739 -2.5472 21 6 9.4250 10.1463 -2.0853 22 7 8.6176 11.0845 -1.6409 23 14 11.1731 10.5771 -2.5831 24 1 11.8725 9.3513 -3.0453 25 1 11.1431 11.5740 -3.6834 26 1 11.8933 11.1486 -1.4169 27 7 4.9454 3.1828 -0.7881 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 5.2023 0.6383 -1.2481 32 1 3.8048 -0.4643 -1.2482 33 1 3.7244 1.0749 -2.1385 34 1 3.7227 1.0758 2.1399 35 1 3.8037 -0.4638 1.2503 36 1 5.2013 0.6389 1.2509 37 1 2.6430 3.4612 1.5061 38 1 6.7286 4.6136 -2.0821 39 1 7.8776 6.5721 -2.6232 40 1 6.7515 10.3557 -2.4971 41 1 5.5654 9.0368 -2.3514 42 1 6.7365 9.0361 -3.6920 43 1 8.9296 12.0005 -1.5728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645826558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:18 Heat of formation + Delta-G solvation = -64.455606 kcal Electronic energy + Delta-G solvation = -27106.836388 eV Core-core repulsion = 23086.739895 eV Total energy + Delta-G solvation = -4020.096493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.21297 -40.15148 -39.26454 -36.77320 -35.77787 -35.03429 -34.03699 -32.50024 -29.61804 -28.63305 -28.09693 -27.48154 -25.35527 -24.69270 -23.99468 -22.13460 -21.19353 -20.44780 -19.56874 -18.38311 -17.57907 -17.43637 -16.69636 -16.58879 -16.39932 -15.86981 -15.49333 -15.16884 -14.77507 -14.42392 -14.31864 -14.00025 -13.66980 -13.48919 -13.11448 -12.77505 -12.73909 -12.52192 -12.40376 -12.23210 -12.13198 -11.89777 -11.51055 -11.23326 -11.10484 -11.06732 -11.05937 -10.80061 -10.56974 -10.45238 -10.35399 -10.30882 -9.65388 -9.51644 -9.15221 -8.93578 -8.67998 -8.31988 -7.82745 -6.20721 -4.30438 1.04677 1.42231 1.97066 2.12158 2.25511 2.71276 2.92730 3.19551 3.27888 3.30298 3.60100 4.18018 4.26677 4.41964 4.65419 4.74376 4.79036 4.80554 4.87980 5.12467 5.18640 5.22764 5.39360 5.44315 5.56180 5.61513 5.77960 5.84693 5.95739 6.04024 6.15237 6.43102 6.61226 6.84312 6.85381 7.04448 7.23613 7.49197 7.50712 7.62878 7.80982 7.93843 8.04474 8.50267 8.66256 8.91274 9.36951 10.85348 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.002175 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.332277 B =12871.010352 C =13216.251853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.469 3.531 4 O -0.492 6.492 5 C 0.028 3.972 6 C -0.127 4.127 7 C -0.136 4.136 8 C 0.087 3.913 9 C -0.295 4.295 10 S 0.263 5.737 11 C 0.273 3.727 12 N -0.642 5.642 13 C 0.691 3.309 14 O -0.564 6.564 15 N -0.705 5.705 16 C 0.279 3.721 17 H 0.053 0.947 18 C -0.150 4.150 19 C -0.536 4.536 20 H 0.063 0.937 21 C 0.067 3.933 22 N -0.881 5.881 23 Si 0.904 3.096 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.282 1.282 27 N -0.519 5.519 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.169 0.831 38 H 0.415 0.585 39 H 0.391 0.609 40 H 0.093 0.907 41 H 0.017 0.983 42 H 0.028 0.972 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.263 -22.335 3.074 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.311 3.689 4 O -0.378 6.378 5 C 0.024 3.976 6 C -0.184 4.184 7 C -0.194 4.194 8 C -0.045 4.045 9 C -0.437 4.437 10 S 0.514 5.486 11 C -0.095 4.095 12 N -0.295 5.295 13 C 0.390 3.610 14 O -0.442 6.442 15 N -0.355 5.355 16 C 0.178 3.822 17 H 0.071 0.929 18 C -0.208 4.208 19 C -0.574 4.574 20 H 0.081 0.919 21 C -0.137 4.137 22 N -0.518 5.518 23 Si 0.732 3.268 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.208 1.208 27 N -0.242 5.242 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.186 0.814 38 H 0.252 0.748 39 H 0.224 0.776 40 H 0.112 0.888 41 H 0.036 0.964 42 H 0.047 0.953 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.782 -20.360 3.788 23.826 hybrid contribution 0.934 -0.996 -1.090 1.747 sum -10.848 -21.356 2.698 24.105 Atomic orbital electron populations 1.23284 0.76322 1.03668 1.02667 1.86480 1.23304 1.33132 1.84204 1.23509 0.91648 0.81433 0.72340 1.90702 1.66797 1.36131 1.44141 1.18753 0.86710 0.91766 1.00349 1.21697 1.02934 0.99276 0.94522 1.21888 1.02501 1.00446 0.94548 1.18629 0.95571 0.94808 0.95527 1.27258 1.08451 0.99070 1.08886 1.85253 1.26183 1.05442 1.31770 1.23006 0.96473 0.91600 0.98467 1.42083 1.36790 1.08904 1.41742 1.16117 0.82659 0.79431 0.82823 1.90818 1.50533 1.64097 1.38716 1.45872 1.35863 1.12984 1.40828 1.18831 0.94558 0.71285 0.97560 0.92887 1.22125 0.96159 1.04497 0.98061 1.21201 0.96237 0.94313 1.45669 0.91867 1.24881 0.98074 0.96027 0.94695 1.69906 1.35317 1.01647 1.44975 0.86348 0.83735 0.78490 0.78254 1.19718 1.20828 1.20814 1.65919 1.20286 1.10428 1.27603 0.91849 0.91877 0.88029 0.89945 0.91526 0.92013 0.91858 0.90646 0.90458 0.81385 0.74772 0.77569 0.88849 0.96432 0.95320 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.35 -3.37 10.37 -39.24 -0.41 -3.77 16 3 C 0.47 5.50 6.42 36.00 0.23 5.73 16 4 O -0.49 -7.10 13.93 -18.76 -0.26 -7.36 16 5 C 0.03 0.31 0.85 -156.81 -0.13 0.18 16 6 C -0.13 -1.24 7.85 37.16 0.29 -0.95 16 7 C -0.14 -1.16 8.36 37.16 0.31 -0.85 16 8 C 0.09 1.22 5.21 -84.20 -0.44 0.78 16 9 C -0.30 -4.24 9.44 29.05 0.27 -3.96 16 10 S 0.26 4.28 20.21 -107.50 -2.17 2.10 16 11 C 0.27 4.47 8.19 -87.35 -0.72 3.75 16 12 N -0.64 -10.12 5.41 -17.48 -0.09 -10.21 16 13 C 0.69 13.33 8.49 -86.91 -0.74 12.60 16 14 O -0.56 -12.61 13.47 5.30 0.07 -12.54 16 15 N -0.70 -13.83 5.07 -59.81 -0.30 -14.13 16 16 C 0.28 6.76 2.56 -69.08 -0.18 6.58 16 17 H 0.05 1.48 7.57 -51.93 -0.39 1.08 16 18 C -0.15 -3.58 9.26 37.16 0.34 -3.24 16 19 C -0.54 -13.60 8.73 -34.44 -0.30 -13.90 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 21 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 22 N -0.88 -24.06 11.32 55.43 0.63 -23.43 16 23 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 N -0.52 -7.86 9.60 -11.28 -0.11 -7.97 16 28 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.80 7.97 -51.92 -0.41 0.39 16 32 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.17 2.21 7.30 -52.49 -0.38 1.82 16 38 H 0.41 5.24 8.83 -40.82 -0.36 4.88 16 39 H 0.39 6.48 8.55 -40.82 -0.35 6.13 16 40 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 375.16 15.07 5.65 5.65 Total: -1.00 -31.10 375.16 -8.07 -39.18 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.98 Total: 7.75 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -0.08 Total: 9.67 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.12 Total: -55.74 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.60 Total: -23.67 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -2.17 Total: 2.10 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.10 -8.07 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645826558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.277 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds