Wall clock time and date at job start Tue Mar 31 2020 23:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34223 * 117.00359 * 2 1 4 4 O 1.20833 * 119.99722 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00380 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46919 * 59.99827 * 5 3 2 7 7 C 1.53004 * 109.47034 * 299.99993 * 5 3 2 8 8 C 1.50699 * 109.47303 * 180.02562 * 5 3 2 9 9 C 1.33415 * 122.71844 * 44.99783 * 8 5 3 10 10 S 1.76165 * 108.07013 * 179.97438 * 9 8 5 11 11 C 1.70965 * 90.34574 * 0.02562 * 10 9 8 12 12 N 1.39000 * 124.94865 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99677 * 0.02562 * 12 11 10 14 14 O 1.21577 * 119.99987 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99632 * 179.97438 * 13 12 11 16 16 C 1.46506 * 119.99693 * 179.97438 * 15 13 12 17 17 H 1.08996 * 109.46660 * 35.00912 * 16 15 13 18 18 C 1.52997 * 109.47289 * 275.00198 * 16 15 13 19 19 C 1.50708 * 109.46796 * 155.00272 * 16 15 13 20 20 H 1.07995 * 119.99755 * 0.02562 * 19 16 15 21 21 C 1.37873 * 119.99729 * 180.02562 * 19 16 15 22 22 N 1.31516 * 119.99909 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 119.99980 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.46950 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47111 * 120.00368 * 23 21 19 26 26 H 1.48500 * 109.47074 * 240.00161 * 23 21 19 27 27 N 1.29629 * 110.10881 * 0.26312 * 11 10 9 28 28 H 1.08999 * 109.47523 * 300.00297 * 1 2 3 29 29 H 1.09007 * 109.47405 * 59.99992 * 1 2 3 30 30 H 1.09004 * 109.47270 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46974 * 179.97438 * 6 5 3 32 32 H 1.08990 * 109.47507 * 300.00025 * 6 5 3 33 33 H 1.09005 * 109.47004 * 60.00608 * 6 5 3 34 34 H 1.09005 * 109.46729 * 299.99834 * 7 5 3 35 35 H 1.09001 * 109.46971 * 59.99711 * 7 5 3 36 36 H 1.08998 * 109.46946 * 180.02562 * 7 5 3 37 37 H 1.08001 * 125.95950 * 0.02562 * 9 8 5 38 38 H 0.96995 * 120.00659 * 180.02562 * 12 11 10 39 39 H 0.97000 * 120.00190 * 0.02562 * 15 13 12 40 40 H 1.09002 * 109.47153 * 179.97438 * 18 16 15 41 41 H 1.09001 * 109.46832 * 60.00146 * 18 16 15 42 42 H 1.09004 * 109.47261 * 300.00128 * 18 16 15 43 43 H 0.97002 * 119.99804 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1138 0.5809 -1.2483 7 6 4.1128 0.5814 1.2502 8 6 3.9936 2.7199 0.0011 9 6 3.4366 3.6363 0.7948 10 16 4.2227 5.1813 0.4810 11 6 5.2264 4.4445 -0.6906 12 7 6.1985 5.1035 -1.4341 13 6 6.4046 6.4233 -1.2547 14 8 5.7406 7.0373 -0.4422 15 7 7.3476 7.0621 -1.9752 16 6 7.5712 8.4969 -1.7806 17 1 7.4202 8.7490 -0.7310 18 6 6.5853 9.2883 -2.6423 19 6 8.9814 8.8445 -2.1828 20 1 9.6445 8.0739 -2.5472 21 6 9.4250 10.1463 -2.0853 22 7 8.6176 11.0845 -1.6409 23 14 11.1731 10.5771 -2.5831 24 1 11.8725 9.3513 -3.0453 25 1 11.1431 11.5740 -3.6834 26 1 11.8933 11.1486 -1.4169 27 7 4.9454 3.1828 -0.7881 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 5.2023 0.6383 -1.2481 32 1 3.8048 -0.4643 -1.2482 33 1 3.7244 1.0749 -2.1385 34 1 3.7227 1.0758 2.1399 35 1 3.8037 -0.4638 1.2503 36 1 5.2013 0.6389 1.2509 37 1 2.6430 3.4612 1.5061 38 1 6.7286 4.6136 -2.0821 39 1 7.8776 6.5721 -2.6232 40 1 6.7515 10.3557 -2.4971 41 1 5.5654 9.0368 -2.3514 42 1 6.7365 9.0361 -3.6920 43 1 8.9296 12.0005 -1.5728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645826558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:17 Heat of formation + Delta-G solvation = -84.274803 kcal Electronic energy + Delta-G solvation = -27107.695812 eV Core-core repulsion = 23086.739895 eV Total energy + Delta-G solvation = -4020.955917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.17581 -41.56498 -40.45571 -37.69418 -37.16740 -36.47179 -35.33130 -34.33979 -31.16301 -30.07570 -28.71191 -28.24774 -27.34296 -25.92900 -24.88892 -23.61929 -22.37955 -22.01838 -20.93920 -19.74281 -18.88076 -18.35308 -18.05713 -17.59400 -17.52227 -17.28656 -16.90926 -16.80782 -16.17878 -15.60633 -15.47931 -15.20726 -14.77176 -14.60534 -14.44671 -14.23347 -13.82092 -13.57839 -13.49333 -13.24540 -13.04019 -13.00677 -12.92561 -12.85242 -12.75676 -12.32882 -12.29156 -12.19101 -12.04179 -11.87205 -11.79386 -11.35997 -11.16027 -11.10377 -10.76996 -10.62684 -10.20416 -10.01353 -9.15476 -8.18072 -6.34792 -0.20047 0.16946 0.90433 1.08399 1.18956 1.41514 1.46056 1.48543 1.59221 1.81630 2.15809 2.41281 3.07313 3.13870 3.34820 3.63210 3.87580 3.93557 4.20438 4.31927 4.34066 4.45874 4.69275 4.70999 4.74993 4.78100 4.80436 4.84836 4.92355 4.95298 5.06630 5.14075 5.19626 5.28124 5.29521 5.38167 5.47033 5.57189 5.74960 5.98719 6.07470 6.61006 6.67020 6.72402 6.96832 7.27993 7.42976 8.88473 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.002175 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.332277 B =12871.010352 C =13216.251853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.473 3.527 4 O -0.527 6.527 5 C 0.025 3.975 6 C -0.122 4.122 7 C -0.132 4.132 8 C 0.080 3.920 9 C -0.283 4.283 10 S 0.223 5.777 11 C 0.258 3.742 12 N -0.625 5.625 13 C 0.694 3.306 14 O -0.597 6.597 15 N -0.699 5.699 16 C 0.288 3.712 17 H 0.009 0.991 18 C -0.137 4.137 19 C -0.545 4.545 20 H 0.076 0.924 21 C 0.016 3.984 22 N -0.915 5.915 23 Si 0.972 3.028 24 H -0.260 1.260 25 H -0.280 1.280 26 H -0.285 1.285 27 N -0.508 5.508 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.137 0.863 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.180 0.820 38 H 0.431 0.569 39 H 0.408 0.592 40 H 0.069 0.931 41 H 0.014 0.986 42 H 0.041 0.959 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.735 -25.197 2.456 27.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.316 3.684 4 O -0.415 6.415 5 C 0.021 3.979 6 C -0.180 4.180 7 C -0.190 4.190 8 C -0.052 4.052 9 C -0.424 4.424 10 S 0.473 5.527 11 C -0.111 4.111 12 N -0.280 5.280 13 C 0.393 3.607 14 O -0.477 6.477 15 N -0.351 5.351 16 C 0.185 3.815 17 H 0.027 0.973 18 C -0.196 4.196 19 C -0.583 4.583 20 H 0.094 0.906 21 C -0.185 4.185 22 N -0.553 5.553 23 Si 0.797 3.203 24 H -0.184 1.184 25 H -0.206 1.206 26 H -0.211 1.211 27 N -0.231 5.231 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.155 0.845 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.197 0.803 38 H 0.271 0.729 39 H 0.244 0.756 40 H 0.088 0.912 41 H 0.033 0.967 42 H 0.060 0.940 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.251 -23.319 3.142 26.081 hybrid contribution 0.625 -0.247 -0.850 1.083 sum -10.626 -23.566 2.293 25.952 Atomic orbital electron populations 1.23592 0.74680 1.05922 1.02426 1.86467 1.24834 1.31664 1.83522 1.23609 0.91818 0.81574 0.71409 1.90694 1.67536 1.37326 1.45977 1.18926 0.86681 0.89975 1.02316 1.21694 1.02828 1.00403 0.93050 1.21912 1.02576 1.01479 0.93025 1.19192 0.94862 0.96496 0.94690 1.27315 1.08298 0.97696 1.09098 1.85385 1.27236 1.07421 1.32656 1.23094 0.96996 0.92004 0.99010 1.41649 1.36791 1.07663 1.41847 1.16075 0.82103 0.80316 0.82227 1.90814 1.51552 1.65383 1.39912 1.45423 1.36508 1.11617 1.41571 1.18398 0.94540 0.73620 0.94950 0.97319 1.21950 0.95943 1.02988 0.98706 1.21524 0.96773 0.94743 1.45254 0.90591 1.25758 1.01978 0.96062 0.94685 1.70049 1.37222 1.01983 1.46063 0.85287 0.78893 0.78475 0.77600 1.18355 1.20608 1.21105 1.65978 1.20216 1.09613 1.27294 0.91869 0.92441 0.84529 0.89849 0.89016 0.93549 0.91898 0.88285 0.90156 0.80264 0.72870 0.75563 0.91197 0.96670 0.94015 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.50 16 2 O -0.35 -5.75 10.37 -51.35 -0.53 -6.28 16 3 C 0.47 10.28 6.42 71.23 0.46 10.74 16 4 O -0.53 -14.80 13.93 21.94 0.31 -14.50 16 5 C 0.03 0.51 0.85 -53.67 -0.05 0.46 16 6 C -0.12 -2.10 7.85 71.98 0.56 -1.54 16 7 C -0.13 -1.91 8.36 71.98 0.60 -1.31 16 8 C 0.08 2.15 5.21 41.44 0.22 2.37 16 9 C -0.28 -8.02 9.44 66.73 0.63 -7.39 16 10 S 0.22 7.39 20.21 -56.49 -1.14 6.25 16 11 C 0.26 8.34 8.19 179.20 1.47 9.81 16 12 N -0.63 -19.37 5.41 -327.46 -1.77 -21.14 16 13 C 0.69 26.96 8.49 179.05 1.52 28.48 16 14 O -0.60 -27.49 13.47 -3.96 -0.05 -27.55 16 15 N -0.70 -27.30 5.07 -461.40 -2.34 -29.64 16 16 C 0.29 14.20 2.56 44.25 0.11 14.31 16 17 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 18 C -0.14 -6.67 9.26 71.98 0.67 -6.01 16 19 C -0.54 -27.49 8.73 25.60 0.22 -27.27 16 20 H 0.08 3.56 7.74 -2.91 -0.02 3.54 16 21 C 0.02 0.81 5.30 84.65 0.45 1.26 16 22 N -0.92 -50.88 11.32 21.45 0.24 -50.63 16 23 Si 0.97 40.80 29.54 68.60 2.03 42.83 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 25 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 27 N -0.51 -14.88 9.60 -189.59 -1.82 -16.70 16 28 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 29 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.14 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.08 1.42 7.97 -2.38 -0.02 1.40 16 32 H 0.09 1.11 8.11 -2.39 -0.02 1.09 16 33 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.10 0.98 8.11 -2.39 -0.02 0.96 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.18 4.63 7.30 -2.91 -0.02 4.61 16 38 H 0.43 10.30 8.83 -92.71 -0.82 9.48 16 39 H 0.41 13.01 8.55 -92.71 -0.79 12.22 16 40 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 41 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 43 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -67.92 375.16 2.43 -65.49 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: -0.55 Total: 26.45 kcal Atomic # 6 Polarization: 17.36 SS G_CDS: 8.06 Total: 25.42 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -5.69 Total: -118.12 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -0.28 Total: -48.33 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: 7.39 SS G_CDS: -1.14 Total: 6.25 kcal Total: -67.92 2.43 -65.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645826558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.780 kcal (2) G-P(sol) polarization free energy of solvation -67.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds