Wall clock time and date at job start Tue Mar 31 2020 23:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46979 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47371 * 119.99948 * 8 6 4 11 11 H 1.48496 * 109.47443 * 240.00340 * 8 6 4 12 12 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 13 13 O 1.20827 * 120.00172 * 119.99679 * 12 2 1 14 14 O 1.34231 * 120.00242 * 300.00144 * 12 2 1 15 15 C 1.45195 * 117.00102 * 180.02562 * 14 12 2 16 16 C 1.50701 * 109.46992 * 180.02562 * 15 14 12 17 17 O 1.21279 * 119.99967 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99954 * 180.02562 * 16 15 14 19 19 C 1.46497 * 120.00140 * 179.97438 * 18 16 15 20 20 C 1.52996 * 109.47432 * 179.97438 * 19 18 16 21 21 C 1.50706 * 109.47552 * 180.02562 * 20 19 18 22 22 C 1.38419 * 120.02105 * 269.72700 * 21 20 19 23 23 F 1.35105 * 120.01443 * 359.97187 * 22 21 20 24 24 C 1.38477 * 119.97626 * 179.69738 * 22 21 20 25 25 C 1.38212 * 120.01839 * 0.59179 * 24 22 21 26 26 C 1.38210 * 120.05317 * 359.68582 * 25 24 22 27 27 C 1.38417 * 120.02769 * 89.99631 * 21 20 19 28 28 F 1.35100 * 120.01305 * 359.97438 * 27 21 20 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 33 33 H 1.09009 * 109.46817 * 299.99214 * 15 14 12 34 34 H 1.09000 * 109.47771 * 59.99189 * 15 14 12 35 35 H 0.97003 * 119.99942 * 359.97438 * 18 16 15 36 36 H 1.09000 * 109.47455 * 299.99933 * 19 18 16 37 37 H 1.08999 * 109.47190 * 60.00059 * 19 18 16 38 38 H 1.09009 * 109.47507 * 299.99923 * 20 19 18 39 39 H 1.09000 * 109.47352 * 59.99761 * 20 19 18 40 40 H 1.07997 * 119.98984 * 180.32011 * 24 22 21 41 41 H 1.07996 * 119.97262 * 179.69920 * 25 24 22 42 42 H 1.07995 * 119.98731 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 6 2.0323 -0.7104 1.2305 13 8 2.7269 -1.6928 1.1196 14 8 1.7080 -0.2518 2.4496 15 6 2.2277 -0.9857 3.5896 16 6 1.7626 -0.3293 4.8639 17 8 1.0625 0.6599 4.8160 18 7 2.1254 -0.8409 6.0568 19 6 1.6738 -0.2025 7.2956 20 6 2.2212 -0.9758 8.4969 21 6 1.7561 -0.3194 9.7713 22 6 2.5232 0.6709 10.3602 23 9 3.6896 1.0492 9.7930 24 6 2.0919 1.2778 11.5278 25 6 0.9019 0.8864 12.1117 26 6 0.1380 -0.1064 11.5277 27 6 0.5643 -0.7103 10.3568 28 9 -0.1830 -1.6802 9.7857 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.7087 1.1612 -3.4844 33 1 1.8641 -2.0129 3.5569 34 1 3.3172 -0.9847 3.5566 35 1 2.6856 -1.6319 6.0951 36 1 2.0368 0.8248 7.3283 37 1 0.5843 -0.2040 7.3289 38 1 1.8578 -2.0030 8.4641 39 1 3.3107 -0.9747 8.4639 40 1 2.6877 2.0541 11.9846 41 1 0.5686 1.3568 13.0249 42 1 -0.7915 -0.4117 11.9851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649876774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:12 Heat of formation + Delta-G solvation = -195.290408 kcal Electronic energy + Delta-G solvation = -28078.381925 eV Core-core repulsion = 23466.478872 eV Total energy + Delta-G solvation = -4611.903053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.49881 -49.49815 -40.09764 -39.51937 -39.05641 -36.02056 -35.47908 -33.87404 -33.25045 -30.85236 -30.71908 -29.71829 -27.79411 -25.17691 -24.31708 -23.43260 -22.92254 -21.95366 -20.72089 -19.82264 -18.66633 -17.91414 -17.34595 -16.99561 -16.67145 -16.32712 -16.29489 -16.09947 -16.03503 -15.76904 -15.69378 -15.32015 -15.15230 -14.90904 -14.31007 -14.05467 -13.95869 -13.44172 -13.29994 -12.87385 -12.86479 -12.64091 -12.45778 -12.27880 -12.06868 -11.87056 -11.70565 -11.50160 -11.04583 -10.76842 -10.67418 -10.33511 -10.18015 -10.05461 -9.88673 -9.45971 -9.32498 -9.29948 -9.16744 -9.00658 -8.43864 -6.08491 -4.14411 0.36510 0.39904 2.55686 2.56215 2.79734 3.25494 3.30425 3.32122 3.37458 3.44278 3.69899 3.83724 4.00557 4.05546 4.25787 4.43076 4.46606 4.57120 4.68939 4.74189 4.98089 5.20128 5.24227 5.25010 5.26113 5.27263 5.36995 5.37237 5.57855 5.59467 5.60005 6.01553 6.14856 6.19314 6.71684 6.91534 6.92285 7.13476 7.27324 7.46737 7.77017 7.96272 8.11083 8.15899 8.79844 8.94378 9.50957 10.98867 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.029691 B = 0.001698 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.816560 B =16487.416577 C =16651.532532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.067 0.933 4 C -0.512 4.512 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.905 3.095 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.467 3.533 13 O -0.518 6.518 14 O -0.342 6.342 15 C 0.044 3.956 16 C 0.517 3.483 17 O -0.511 6.511 18 N -0.733 5.733 19 C 0.129 3.871 20 C -0.093 4.093 21 C -0.154 4.154 22 C 0.136 3.864 23 F -0.126 7.126 24 C -0.163 4.163 25 C -0.062 4.062 26 C -0.163 4.163 27 C 0.136 3.864 28 F -0.126 7.126 29 H 0.031 0.969 30 H 0.026 0.974 31 H 0.096 0.904 32 H 0.263 0.737 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.402 0.598 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.051 -1.867 32.919 32.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.084 0.916 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.732 3.268 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.312 3.688 13 O -0.405 6.405 14 O -0.259 6.259 15 C -0.034 4.034 16 C 0.302 3.698 17 O -0.384 6.384 18 N -0.389 5.389 19 C 0.006 3.994 20 C -0.130 4.130 21 C -0.156 4.156 22 C 0.116 3.884 23 F -0.104 7.104 24 C -0.182 4.182 25 C -0.080 4.080 26 C -0.182 4.182 27 C 0.116 3.884 28 F -0.104 7.104 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.237 0.763 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.162 0.838 41 H 0.163 0.837 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.676 -1.340 32.657 32.691 hybrid contribution 0.761 -1.062 -0.818 1.542 sum 1.437 -2.402 31.839 31.962 Atomic orbital electron populations 1.21740 0.95421 1.00072 1.01992 1.18799 0.95034 0.97082 0.85094 0.91581 1.21167 1.31937 1.13246 0.88696 0.90543 1.24949 0.94927 0.95042 0.99154 1.69895 1.36443 1.22794 1.23773 0.86315 0.78625 0.79668 0.82147 1.19530 1.20903 1.20904 1.25556 0.76430 0.83216 0.83619 1.90496 1.36556 1.26785 1.86622 1.86740 1.69898 1.54790 1.14433 1.22433 1.00351 0.96354 0.84227 1.20316 0.80435 0.84544 0.84471 1.90757 1.35786 1.24834 1.87017 1.45769 1.55127 1.32858 1.05104 1.21225 0.99970 0.96806 0.81444 1.20655 1.02529 1.00011 0.89816 1.19650 0.95847 1.00437 0.99683 1.17227 0.82974 0.95216 0.92983 1.91555 1.44778 1.89827 1.84263 1.21261 0.98749 1.02482 0.95664 1.20898 0.92753 0.94979 0.99375 1.21259 1.02425 0.98879 0.95595 1.17224 0.89503 0.88751 0.92918 1.91554 1.74924 1.59841 1.84098 0.95005 0.95463 0.88515 0.92717 0.88735 0.88713 0.76322 0.91002 0.91010 0.89092 0.89085 0.83789 0.83739 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.90 37.16 0.33 -2.99 16 2 C 0.06 1.54 2.74 -92.92 -0.25 1.28 16 3 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 4 C -0.51 -14.52 8.37 -34.44 -0.29 -14.81 16 5 H 0.08 2.24 6.76 -52.48 -0.35 1.88 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.47 11.19 7.25 36.01 0.26 11.45 16 13 O -0.52 -12.97 15.21 -18.75 -0.29 -13.26 16 14 O -0.34 -7.26 9.66 -45.91 -0.44 -7.71 16 15 C 0.04 0.70 5.94 36.01 0.21 0.91 16 16 C 0.52 7.77 7.91 -10.99 -0.09 7.68 16 17 O -0.51 -9.99 16.50 -14.10 -0.23 -10.22 16 18 N -0.73 -7.55 5.56 -60.30 -0.33 -7.89 16 19 C 0.13 1.26 5.66 -4.05 -0.02 1.24 16 20 C -0.09 -0.65 5.11 -27.88 -0.14 -0.80 16 21 C -0.15 -1.14 5.15 -104.49 -0.54 -1.68 16 22 C 0.14 0.98 7.24 -39.43 -0.29 0.70 16 23 F -0.13 -1.06 16.47 2.25 0.04 -1.03 16 24 C -0.16 -0.84 10.03 -39.50 -0.40 -1.24 16 25 C -0.06 -0.25 10.04 -39.60 -0.40 -0.65 16 26 C -0.16 -0.84 10.03 -39.51 -0.40 -1.24 16 27 C 0.14 0.98 7.24 -39.43 -0.29 0.70 16 28 F -0.13 -1.07 16.48 2.25 0.04 -1.03 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.61 8.11 -51.93 -0.42 0.19 16 31 H 0.10 2.55 6.07 -51.93 -0.32 2.23 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.09 1.32 8.13 -51.92 -0.42 0.90 16 34 H 0.09 1.32 8.13 -51.93 -0.42 0.89 16 35 H 0.40 2.78 8.47 -40.82 -0.35 2.44 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.57 7.64 -51.92 -0.40 0.17 16 39 H 0.09 0.56 7.63 -51.93 -0.40 0.17 16 40 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 41 H 0.14 0.18 8.06 -52.49 -0.42 -0.25 16 42 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 LS Contribution 374.96 15.07 5.65 5.65 Total: -1.00 -34.51 374.96 -7.52 -42.02 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -5.17 Total: -0.72 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.38 Total: 2.15 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.29 Total: -32.43 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.96 Total: -31.19 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.07 Total: -2.05 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.51 -7.52 -42.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649876774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.268 kcal (2) G-P(sol) polarization free energy of solvation -34.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds