Wall clock time and date at job start Tue Mar 31 2020 23:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35787 * 116.99870 * 2 1 4 4 C 1.38023 * 123.47301 * 0.21259 * 3 2 1 5 5 C 1.33609 * 115.08347 * 180.29728 * 4 3 2 6 6 S 1.70575 * 111.15118 * 359.72900 * 5 4 3 7 7 C 1.37270 * 123.47030 * 180.02562 * 3 2 1 8 8 C 1.41725 * 125.47485 * 359.97438 * 7 3 2 9 9 O 1.21772 * 120.00417 * 359.72429 * 8 7 3 10 10 N 1.34779 * 119.99933 * 179.72477 * 8 7 3 11 11 C 1.46500 * 120.00048 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47060 * 179.97438 * 11 10 8 13 13 H 1.08992 * 109.47056 * 294.99805 * 12 11 10 14 14 C 1.52997 * 109.46978 * 174.99741 * 12 11 10 15 15 N 1.46906 * 109.47053 * 55.00135 * 12 11 10 16 16 C 1.46898 * 110.99715 * 204.99863 * 15 12 11 17 17 C 1.50703 * 109.46771 * 179.97438 * 16 15 12 18 18 O 1.21289 * 119.99985 * 0.02562 * 17 16 15 19 19 N 1.34781 * 120.00007 * 179.97438 * 17 16 15 20 20 C 1.37091 * 120.00058 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99909 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00186 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99917 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00279 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47282 * 89.99975 * 24 22 20 26 26 H 1.48497 * 109.47358 * 209.99764 * 24 22 20 27 27 H 1.48499 * 109.47198 * 329.99732 * 24 22 20 28 28 H 1.09007 * 109.47004 * 300.00131 * 1 2 3 29 29 H 1.08996 * 109.47243 * 60.00278 * 1 2 3 30 30 H 1.08995 * 109.46872 * 180.02562 * 1 2 3 31 31 H 1.07997 * 122.45521 * 0.02562 * 4 3 2 32 32 H 1.08008 * 124.42477 * 179.76722 * 5 4 3 33 33 H 0.96999 * 120.00240 * 359.97438 * 10 8 7 34 34 H 1.09000 * 109.47025 * 59.99517 * 11 10 8 35 35 H 1.08998 * 109.47007 * 299.99619 * 11 10 8 36 36 H 1.09002 * 109.47045 * 60.00167 * 14 12 11 37 37 H 1.09000 * 109.47140 * 180.02562 * 14 12 11 38 38 H 1.09001 * 109.47375 * 300.00092 * 14 12 11 39 39 H 1.00896 * 110.99538 * 328.95036 * 15 12 11 40 40 H 1.08994 * 109.47005 * 299.99284 * 16 15 12 41 41 H 1.09001 * 109.47253 * 60.00251 * 16 15 12 42 42 H 0.96996 * 119.99768 * 0.02562 * 19 17 16 43 43 H 0.97003 * 120.00361 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.3652 2.4108 0.0043 5 6 2.1389 3.5001 -0.0027 6 16 3.7922 3.0806 -0.0078 7 6 3.4094 1.3646 -0.0005 8 6 4.3567 0.3105 -0.0006 9 8 3.9794 -0.8473 0.0049 10 7 5.6753 0.5895 -0.0067 11 6 6.6546 -0.5001 -0.0074 12 6 8.0683 0.0848 -0.0154 13 1 8.2340 0.6219 -0.9493 14 6 9.0895 -1.0476 0.1097 15 7 8.2220 1.0098 1.1154 16 6 9.2663 2.0062 0.8423 17 6 9.3945 2.9356 2.0216 18 8 8.6859 2.7828 2.9941 19 7 10.2972 3.9362 1.9961 20 6 10.4141 4.7814 3.0691 21 1 9.7826 4.6457 3.9347 22 6 11.3444 5.8132 3.0427 23 7 12.1124 5.9785 1.9893 24 14 11.5032 6.9653 4.5044 25 1 12.5038 6.4210 5.4573 26 1 11.9440 8.3032 4.0346 27 1 10.1883 7.0875 5.1836 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2866 2.4660 0.0083 32 1 1.7661 4.5138 -0.0043 33 1 5.9759 1.5117 -0.0115 34 1 6.5116 -1.1165 -0.8949 35 1 6.5189 -1.1111 0.8850 36 1 8.9754 -1.7340 -0.7294 37 1 10.0966 -0.6309 0.1044 38 1 8.9238 -1.5848 1.0436 39 1 7.3454 1.4567 1.3386 40 1 10.2165 1.4996 0.6736 41 1 8.9979 2.5801 -0.0447 42 1 10.8641 4.0582 1.2186 43 1 12.7616 6.6990 1.9706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662395630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:30 Heat of formation + Delta-G solvation = -66.893950 kcal Electronic energy + Delta-G solvation = -26746.381522 eV Core-core repulsion = 22726.179295 eV Total energy + Delta-G solvation = -4020.202227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.51532 -39.36506 -38.35359 -36.89727 -36.20146 -34.08625 -33.66881 -31.38745 -31.04079 -30.28877 -27.66973 -26.62836 -26.00524 -24.70459 -23.89882 -21.54169 -20.63753 -19.89454 -19.38844 -18.87397 -17.89577 -17.28758 -16.46537 -16.23611 -16.10312 -15.77078 -15.43480 -15.32245 -14.95402 -14.61149 -14.44885 -14.15457 -13.88409 -13.73491 -13.40171 -13.17269 -12.92484 -12.71297 -12.51929 -12.37601 -11.90830 -11.87496 -11.70224 -11.62519 -11.41755 -11.40186 -11.24669 -11.07845 -10.81961 -10.40219 -10.22490 -9.99010 -9.51767 -9.25214 -8.98731 -8.46908 -8.35075 -8.11399 -7.96952 -6.42608 -3.83314 0.23936 1.17541 1.50527 2.06374 3.12934 3.17222 3.18695 3.25358 3.26011 3.31634 3.89434 4.06082 4.28896 4.33509 4.66286 4.74234 4.77676 4.83338 5.00907 5.04488 5.16774 5.20481 5.24781 5.26617 5.33693 5.46382 5.59671 5.70955 5.74980 5.80500 5.85736 5.97574 6.02736 6.21768 6.29630 6.42121 6.94733 7.17785 7.39229 7.54500 7.59223 8.05420 8.19792 8.60404 9.17148 9.53343 10.04827 10.75087 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012593 B = 0.002596 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.841524 B =10781.319690 C =12501.253950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.272 6.272 3 C 0.189 3.811 4 C -0.217 4.217 5 C -0.195 4.195 6 S 0.240 5.760 7 C -0.330 4.330 8 C 0.598 3.402 9 O -0.524 6.524 10 N -0.734 5.734 11 C 0.122 3.878 12 C 0.070 3.930 13 H 0.049 0.951 14 C -0.137 4.137 15 N -0.664 5.664 16 C 0.048 3.952 17 C 0.440 3.560 18 O -0.581 6.581 19 N -0.563 5.563 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.150 0.850 32 H 0.176 0.824 33 H 0.393 0.607 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.347 0.653 40 H 0.088 0.912 41 H 0.044 0.956 42 H 0.392 0.608 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.856 -7.009 -10.441 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.183 6.183 3 C 0.128 3.872 4 C -0.251 4.251 5 C -0.333 4.333 6 S 0.506 5.494 7 C -0.450 4.450 8 C 0.387 3.613 9 O -0.402 6.402 10 N -0.388 5.388 11 C -0.002 4.002 12 C -0.040 4.040 13 H 0.067 0.933 14 C -0.196 4.196 15 N -0.299 5.299 16 C -0.084 4.084 17 C 0.225 3.775 18 O -0.465 6.465 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.121 0.879 31 H 0.168 0.832 32 H 0.193 0.807 33 H 0.228 0.772 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.168 0.832 40 H 0.107 0.893 41 H 0.061 0.939 42 H 0.225 0.775 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.607 -7.600 -9.473 21.389 hybrid contribution -1.421 1.304 -0.406 1.971 sum -19.028 -6.295 -9.879 22.344 Atomic orbital electron populations 1.23188 0.78376 1.04425 1.01314 1.86332 1.20857 1.24121 1.86978 1.18270 0.90184 0.85456 0.93256 1.20035 1.02110 0.90882 1.12030 1.25098 0.99255 1.03921 1.05055 1.83372 1.03248 0.95102 1.67678 1.22756 0.95396 0.98582 1.28315 1.15462 0.81357 0.87747 0.76730 1.90864 1.79508 1.20096 1.49763 1.45932 1.05894 1.10027 1.76908 1.21588 0.86012 0.89413 1.03193 1.21827 0.93986 0.95225 0.92943 0.93323 1.21729 0.98589 0.97115 1.02128 1.60127 1.11429 1.20691 1.37678 1.21769 0.96882 0.93255 0.96515 1.19799 0.84626 0.83812 0.89250 1.90535 1.46909 1.73784 1.35286 1.41861 1.33345 1.26362 1.18453 1.19697 1.18929 1.07242 0.96935 0.87922 1.25255 0.96048 0.98351 0.98288 1.69610 1.22887 1.32937 1.28887 0.85865 0.78812 0.78944 0.80715 1.20391 1.20962 1.19424 0.92506 0.92586 0.87851 0.83207 0.80695 0.77192 0.90711 0.90179 0.92466 0.91988 0.91479 0.83183 0.89336 0.93853 0.77471 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.94 101.05 1.00 1.16 16 2 O -0.27 -3.42 9.36 -36.59 -0.34 -3.76 16 3 C 0.19 2.29 6.70 -40.01 -0.27 2.02 16 4 C -0.22 -1.92 9.17 -41.28 -0.38 -2.29 16 5 C -0.19 -1.58 10.90 29.11 0.32 -1.26 16 6 S 0.24 2.40 22.00 -107.50 -2.37 0.04 16 7 C -0.33 -4.33 6.28 -38.60 -0.24 -4.57 16 8 C 0.60 9.06 7.60 -14.93 -0.11 8.94 16 9 O -0.52 -9.56 15.84 -12.39 -0.20 -9.75 16 10 N -0.73 -9.65 4.98 -63.19 -0.31 -9.97 16 11 C 0.12 1.53 5.31 -4.04 -0.02 1.51 16 12 C 0.07 0.87 2.81 -67.71 -0.19 0.68 16 13 H 0.05 0.55 7.80 -51.93 -0.41 0.15 16 14 C -0.14 -1.54 9.41 37.16 0.35 -1.19 16 15 N -0.66 -10.60 5.93 -107.99 -0.64 -11.24 16 16 C 0.05 0.83 5.97 -4.98 -0.03 0.80 16 17 C 0.44 10.18 7.82 -10.98 -0.09 10.10 16 18 O -0.58 -15.60 15.78 5.55 0.09 -15.51 16 19 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 20 C -0.30 -8.22 9.68 -14.94 -0.14 -8.36 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 24 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 H 0.06 0.32 7.87 -51.93 -0.41 -0.09 16 29 H 0.06 0.30 7.89 -51.93 -0.41 -0.11 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.15 0.90 6.99 -52.49 -0.37 0.54 16 32 H 0.18 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.39 4.76 6.34 -40.82 -0.26 4.51 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.35 5.78 6.41 -39.29 -0.25 5.53 16 40 H 0.09 1.41 7.43 -51.93 -0.39 1.02 16 41 H 0.04 0.65 8.06 -51.93 -0.42 0.23 16 42 H 0.39 9.31 7.90 -40.82 -0.32 8.98 16 43 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 378.57 15.07 5.70 5.70 Total: -1.00 -35.00 378.57 -7.98 -42.98 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -5.66 Total: 15.25 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 0.10 Total: 8.01 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.29 Total: -58.79 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.45 Total: -29.02 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.37 Total: 0.04 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.00 -7.98 -42.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662395630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.914 kcal (2) G-P(sol) polarization free energy of solvation -34.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds